IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
787	 39.81	0	813182..813397	-	71	71903454	-	M28_Spy0789	-	hypothetical protein
788	 31.06	-1	813597..813728	+	43	71903455	-	M28_Spy0790	-	integrase pseudogene
789	 30.18	-2	813750..813971	+	73	71903456	-	M28_Spy0791	-	integrase pseudogene
790	 33.33	-1	814044..814265	+	73	71903457	-	M28_Spy0792	-	integrase pseudogene
791	 35.68	0	814296..814679	+	127	71903458	-	M28_Spy0793	-	integrase pseudogene
792	 39.31	0	814822..816177	+	451	71903459	dacA1	M28_Spy0794	-	D-alanyl-D-alanine carboxypeptidase
793	 36.24	0	816293..817255	-	320	71903460	-	M28_Spy0795	-	polysaccharide deacetylase
794	 33.97	-1	817343..817498	+	51	71903461	-	M28_Spy0796	-	hypothetical protein
795	 39.74	0	817492..818865	+	457	71903462	folC.1	M28_Spy0797	-	dihydrofolate synthase
796	 40.23	0	818876..819484	+	202	71903463	folE	M28_Spy0798	-	GTP cyclohydrolase I
797	 44.32	+1	819493..820293	+	266	71903464	folP	M28_Spy0799	-	dihydropteroate synthase
798	 40.83	0	820300..820659	+	119	71903465	folQ	M28_Spy0800	-	dihydroneopterin aldolase
799	 39.92	0	820656..821156	+	166	71903466	folK	M28_Spy0801	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
800	 41.33	0	821306..822193	+	295	71903467	murB	M28_Spy0802	-	UDP-N-acetylenolpyruvoylglucosamine reductase
801	 39.22	0	822239..823393	+	384	71903468	potA	M28_Spy0803	-	spermidine/putrescine transport ATP-binding protein
802	 40.20	0	823356..824171	+	271	71903469	potB	M28_Spy0804	-	spermidine/putrescine transport system permease protein
803	 37.07	0	824168..824944	+	258	71903470	potC	M28_Spy0805	-	spermidine/putrescine transport system permease protein
804	 36.96	0	824937..826010	+	357	71903471	-	M28_Spy0806	-	spermidine/putrescine-binding protein
805	 37.24	0	826065..826730	-	221	71903472	dpiA	M28_Spy0807	-	transcriptional regulatory protein
806	 39.11	0	826711..828252	-	513	71903473	dpiB	M28_Spy0808	-	sensor kinase
807	 42.12	0	828413..829744	+	443	71903474	malP	M28_Spy0809	-	malate-sodium symport
808	 41.90	0	829776..830942	+	388	71903475	-	M28_Spy0810	-	NAD-dependent malic enzyme
809	 39.14	0	831024..832004	-	326	71903476	-	M28_Spy0811	-	Zn-dependent alcohol dehydrogenase and related dehydrogenase
810	 36.07	0	832198..832929	+	243	71903477	aphA	M28_Spy0812	-	acid phosphatase/phosphotransferase
811	 36.58	0	833071..834639	+	522	71903478	-	M28_Spy0813	-	chloride channel protein
812	 31.87	-1	834802..835416	+	204	71903479	-	M28_Spy0814	-	lipase/acylhydrolase family protein
813	 32.64	-1	835575..836723	+	382	71903480	-	M28_Spy0815	-	hypothetical protein
814	 32.31	-1	836772..837452	+	226	71903481	radC	M28_Spy0816	-	DNA repair protein RadC
815	 38.79	0	837454..838149	-	231	71903482	-	M28_Spy0817	-	glutamine amidotransferase, class I
816	 38.76	0	838159..838803	-	214	71903483	-	M28_Spy0818	-	redox-sensing transcriptional repressor Rex
817	 29.02	-2	839055..839402	-	115	71903484	-	M28_Spy0819	-	putative cytoplasmic protein
818	 39.98	0	839392..840519	-	375	71903485	nifS2	M28_Spy0820	-	cysteine desulfhydrase
819	 38.12	0	840516..841496	-	326	71903486	-	M28_Spy0821	-	ribose-phosphate pyrophosphokinase
820	 32.99	-1	841636..842214	-	192	71903487	-	M28_Spy0822	-	adenylate cyclase family protein
821	 35.71	0	842302..842973	+	223	71903488	-	M28_Spy0823	-	GTP pyrophosphokinase
822	 37.50	0	842945..843784	+	279	71903489	ppnK	M28_Spy0824	-	inorganic polyphosphate/ATP-NAD kinase
823	 37.64	0	843781..844686	+	301	71903490	-	M28_Spy0825	-	ribosomal large subunit pseudouridine synthase D
824	 38.76	0	844690..845685	+	331	71903491	eutD	M28_Spy0826	-	phosphotransacetylase
825	 42.38	+1	845794..846567	+	257	71903492	-	M28_Spy0827	-	short chain dehydrogenase
826	 37.39	0	846761..847450	-	229	71903493	-	M28_Spy0828	-	Na+ driven multidrug efflux pump
827	 38.55	0	847873..848601	+	242	71903494	proV	M28_Spy0829	-	glycine betaine transport ATP-binding protein
828	 39.41	0	848558..850120	+	520	71903495	-	M28_Spy0830	-	glycine betaine transport system permease protein
829	 39.50	0	850377..851381	+	334	71903496	guaC	M28_Spy0831	-	guanosine 5'-monophosphate oxidoreductase
830	 38.32	0	851686..852267	+	193	71903497	xpt	M28_Spy0832	-	xanthine phosphoribosyltransferase
831	 40.42	0	852267..853550	+	427	71903498	-	M28_Spy0833	-	xanthine permease
832	 37.17	0	853614..854552	-	312	71903499	apbE	M28_Spy0834	-	thiamine biosynthesis lipoprotein
833	 36.56	0	854605..854790	-	61	71903500	-	M28_Spy0835	-	4-oxalocrotonate tautomerase
834	 35.26	0	854928..855497	+	189	71903501	tdk2	M28_Spy0836	-	thymidine kinase
835	 37.22	0	855532..856611	+	359	71903502	prfA	M28_Spy0837	-	peptide chain release factor 1
836	 35.71	0	856611..857450	+	279	71903503	hemK	M28_Spy0838	-	peptide release factor-glutamine N5-methyltransferase
837	 37.84	0	857404..858024	+	206	71903504	-	M28_Spy0839	-	SUA5 protein
838	 41.50	0	858042..858494	+	150	71903505	-	M28_Spy0840	-	phosphinothricin N-acetyltransferase
839	 42.12	0	858478..859740	+	420	71903506	glyA	M28_Spy0841	-	serine hydroxymethyltransferase
840	 35.28	0	859747..860724	+	325	71903507	-	M28_Spy0842	-	hypothetical protein
841	 38.67	0	860725..861324	+	199	71903508	-	M28_Spy0843	-	antigen
842	 39.15	0	861334..863052	+	572	71903509	-	M28_Spy0844	-	multidrug resistance ABC transporter ATP-binding and permease protein
843	 38.48	0	863055..864782	+	575	71903510	-	M28_Spy0845	-	multidrug resistance ABC transporter ATP-binding and permease protein
844	 39.75	0	865023..866393	+	456	71903511	nox	M28_Spy0846	-	NADH oxidase H2O-forming
845	 40.96	0	866552..867535	-	327	71903512	ldh	M28_Spy0847	-	L-lactate dehydrogenase
846	 40.05	0	867726..870212	+	828	71903513	gyrA	M28_Spy0848	-	DNA gyrase subunit A
847	 35.60	0	870232..870981	+	249	71903514	-	M28_Spy0849	-	sortase
848	 35.73	0	871061..871477	+	138	71903515	-	M28_Spy0850	-	lactoylglutathione lyase
849	 26.67	-2	871964..872083	+	39	71903516	-	M28_Spy0851	-	hypothetical protein
850	 37.20	0	872034..872525	+	163	71903517	-	M28_Spy0852	-	hypothetical protein
851	 38.27	0	872575..873486	-	303	71903518	-	M28_Spy0853	-	hypothetical protein
852	 37.79	0	873603..874253	-	216	71903519	-	M28_Spy0854	-	hypothetical protein
853	 37.19	0	874250..874690	-	146	71903520	-	M28_Spy0855	-	putative cytoplasmic protein
854	 38.16	0	874909..875757	+	282	71903521	rbgA	M28_Spy0856	-	ribosomal biogenesis GTPase
855	 41.42	0	875822..876538	+	238	71903522	rnhB	M28_Spy0857	-	ribonuclease HII
856	 39.19	0	876603..877439	+	278	71903523	smf	M28_Spy0858	-	hypothetical protein
857	 38.12	0	877546..879675	+	709	71903524	-	M28_Spy0859	-	DNA topoisomerase I
858	 36.44	0	879750..880232	-	160	71903525	-	M28_Spy0860	-	LysR family transcriptional regulator
859	 30.08	-2	880239..880361	-	40	71903526	-	M28_Spy0861	-	LysR family transcriptional regulator
860	 38.28	0	880647..881192	+	181	71903527	-	M28_Spy0862	-	regulatory protein
861	 38.96	0	881204..882199	+	331	71903528	ddh	M28_Spy0863	-	D-lactate dehydrogenase
862	 36.79	0	882304..882969	+	221	71903529	satD	M28_Spy0864	-	hypothetical protein
863	 38.49	0	882962..883678	+	238	71903530	satE	M28_Spy0865	-	hypothetical protein
864	 43.66	+1	883776..885170	+	464	71903531	gid	M28_Spy0866	-	tRNA (uracil-5-)-methyltransferase Gid
865	 41.79	0	885323..886729	+	468	71903532	oadA2	M28_Spy0867	-	oxaloacetate decarboxylase
866	 37.78	0	886772..887086	+	104	71903533	-	M28_Spy0868	-	hypothetical protein
867	 42.74	+1	887086..887436	+	116	71903534	-	M28_Spy0869	-	biotin carboxyl carrier protein of oxaloacetate decarboxylase
868	 42.97	+1	887446..888576	+	376	71903535	-	M28_Spy0870	-	oxaloacetate decarboxylase beta chain
869	 40.90	0	888777..889661	-	294	71903536	-	M28_Spy0871	-	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
870	 35.92	0	889654..890349	-	231	71903537	citG	M28_Spy0872	-	GntR family transcriptional regulator
871	 40.56	0	890507..891931	-	474	71903538	-	M28_Spy0873	-	Mg2+/citrate complex secondary transporter
872	 38.58	0	892290..892613	+	107	71903539	-	M28_Spy0874	-	hypothetical protein
873	 46.37	+2	892667..893065	+	132	162139401	-	M28_Spy0875	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
874	 41.80	0	893110..894231	+	373	71903541	oadB	M28_Spy0876	-	oxaloacetate decarboxylase beta chain
875	 37.78	0	894249..894383	+	44	71903542	-	M28_Spy0877	-	hypothetical protein
876	 41.75	0	894419..894727	+	102	71903543	citD	M28_Spy0878	-	citrate lyase subunit gamma
877	 42.45	+1	894715..895602	+	295	71903544	citE	M28_Spy0879	-	citrate lyase beta chain
878	 42.79	+1	895605..897137	+	510	71903545	citF	M28_Spy0880	-	citrate CoA-transferase
879	 41.28	0	897067..897708	+	213	71903546	citX	M28_Spy0881	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
880	 42.82	+1	897705..899117	+	470	71903547	oadA1	M28_Spy0882	-	oxaloacetate decarboxylase
881	 38.46	0	899227..900279	-	350	71903548	citC	M28_Spy0883	-	[citrate [pro-3S]-lyase] ligase
882	 36.44	0	900368..900850	-	160	71903549	-	M28_Spy0884	-	hypothetical protein
883	 37.40	0	901549..902655	-	368	71903550	xerS	M28_Spy0885	-	site-specific tyrosine recombinase XerS
884	 32.62	-1	903089..903787	+	232	71903551	-	M28_Spy0886	-	phage transcriptional repressor
885	 40.54	0	903922..905490	-	522	71903552	ffh	M28_Spy0887	-	signal recognition particle, subunit FFH/SRP54
886	 33.04	-1	905499..905840	-	113	71903553	ylxM	M28_Spy0888	-	hypothetical protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.