IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
693	 41.13	0	717844..719049	+	401	71903360	rpsA	M28_Spy0695	-	30S ribosomal protein S1
694	 33.00	-1	719596..719898	-	100	71903361	-	M28_Spy0696	-	hypothetical protein
695	 37.89	0	720098..721084	+	328	71903362	-	M28_Spy0697	-	hypothetical protein
696	 40.62	0	721155..721346	+	63	71903363	-	M28_Spy0698	-	hypothetical protein
697	 40.57	0	721395..721781	+	128	71903364	-	M28_Spy0699	-	glutathione S-transferase
698	 38.96	0	721648..722748	+	366	71903365	-	M28_Spy0700	-	putative exfoliative toxin
699	 42.69	+1	722866..723036	-	56	71903366	-	M28_Spy0701	-	hypothetical protein
700	 43.22	+1	723170..724069	+	299	71903367	miaA	M28_Spy0702	-	tRNA delta(2)-isopentenylpyrophosphate transferase
701	 39.73	0	724130..725380	+	416	71903368	hflX	M28_Spy0703	-	GTP-binding protein
702	 37.96	0	725361..726008	+	215	71903369	-	M28_Spy0704	-	hypothetical protein
703	 40.75	0	726023..726952	+	309	71903370	elaC	M28_Spy0705	-	ribonuclease Z
704	 41.96	0	726952..727716	+	254	71903371	-	M28_Spy0706	-	short chain dehydrogenase
705	 42.02	0	727713..729923	+	736	71903372	recJ	M28_Spy0707	-	single-stranded-DNA-specific exonuclease
706	 38.92	0	730073..730591	+	172	71903373	apt	M28_Spy0708	-	adenine phosphoribosyltransferase
707	 35.82	0	730672..731355	+	227	71903374	dnaD	M28_Spy0709	-	phage protein
708	 39.27	0	731352..732008	+	218	71903375	nth	M28_Spy0710	-	endonuclease III
709	 41.92	0	732080..732766	+	228	71903376	-	M28_Spy0711	-	anthranilate synthase component I
710	 40.50	0	732750..733544	+	264	71903377	-	M28_Spy0712	-	NIF3-related protein
711	 40.83	0	733584..734690	+	368	71903378	-	M28_Spy0713	-	glycine/D-amino acid oxidase family protein
712	 42.07	0	734749..735618	+	289	71903379	cpsFO	M28_Spy0714	-	glucose-1-phosphate thymidylyltransferase
713	 40.24	0	735618..736211	+	197	71903380	cpsFP	M28_Spy0715	-	dTDP-4-dehydrorhamnose 3,5-epimerase
714	 40.63	0	736455..737495	+	346	71903381	cpsFQ	M28_Spy0716	-	dTDP-glucose 4,6-dehydratase
715	 39.62	0	737716..738192	+	158	71903382	-	M28_Spy0717	-	mutator protein T
716	 38.58	0	738250..739431	+	393	71903383	-	M28_Spy0718	-	hypothetical protein
717	 39.65	0	739403..740668	+	421	71903384	-	M28_Spy0719	-	TPR repeat-containing protein
718	 39.88	0	740727..742421	-	564	71903385	fbp	M28_Spy0720	-	fibrinogen-binding protein
719	 31.75	-1	742426..742551	+	41	71903386	-	M28_Spy0721	-	hypothetical protein
720	 38.34	0	742733..743731	+	332	71903387	-	M28_Spy0722	-	ABC transporter substrate-binding protein
721	 31.51	-1	743682..743900	+	72	71903388	-	M28_Spy0723	-	hypothetical protein
722	 36.51	0	744064..744945	+	293	71903389	-	M28_Spy0724	-	ABC transporter permease protein
723	 37.94	0	744942..745700	+	252	71903390	-	M28_Spy0725	-	ABC transporter ATP-binding protein
724	 38.69	0	745904..747565	+	553	71903391	-	M28_Spy0726	-	Zn-dependent hydrolase
725	 41.09	0	747698..748483	+	261	71903392	estA	M28_Spy0727	-	acetyl esterase
726	 35.47	0	748513..748839	+	108	71903393	-	M28_Spy0728	-	hypothetical protein
727	 40.78	0	748885..750792	+	635	71903394	-	M28_Spy0729	-	ABC transporter ATP-binding protein
728	 41.79	0	751066..752046	+	326	71903395	acoA	M28_Spy0730	-	pyruvate dehydrogenase E1 component alpha subunit
729	 42.32	+1	752102..753103	+	333	71903396	acoB	M28_Spy0731	-	pyruvate dehydrogenase E1 component beta subunit
730	 42.84	+1	753288..754697	+	469	71903397	acoC	M28_Spy0732	-	branched-chain alpha-keto acid dehydrogenase subunit E2
731	 38.54	0	754708..754995	-	95	71903398	-	M28_Spy0733	-	hypothetical protein
732	 41.55	0	755028..756791	+	587	71903399	acoL	M28_Spy0734	-	dihydrolipoamide dehydrogenase
733	 33.33	-1	756807..757034	-	75	71903400	-	M28_Spy0735	-	hypothetical protein
734	 35.26	0	757464..759950	-	828	71903401	hylA	M28_Spy0736	-	hyaluronate lyase precursor
735	 37.17	0	760114..761103	+	329	71903402	lplB	M28_Spy0737	-	lipoate-protein ligase A
736	 37.12	0	761216..762007	-	263	71903403	-	M28_Spy0738	-	hypothetical protein
737	 37.95	0	762007..763350	-	447	71903404	-	M28_Spy0739	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
738	 37.21	0	763457..764308	+	283	71903405	-	M28_Spy0740	-	hypothetical protein
739	 36.26	0	764305..765261	+	318	71903406	-	M28_Spy0741	-	hypothetical protein
740	 42.40	+1	765315..766670	+	451	71903407	femD	M28_Spy0742	-	phosphoglucosamine mutase
741	 40.03	0	766794..767435	+	213	71903408	-	M28_Spy0743	-	hypothetical protein
742	 38.14	0	767402..768628	+	408	71903409	hemN	M28_Spy0744	-	coproporphyrinogen III oxidase
743	 36.52	0	768638..769390	+	250	71903410	-	M28_Spy0745	-	acyl-acyl carrier protein thioesterase
744	 43.92	+1	769390..770154	+	254	71903411	-	M28_Spy0746	-	4-nitrophenylphosphatase
745	 38.91	0	770142..770786	+	214	71903412	-	M28_Spy0747	-	hypothetical protein
746	 35.11	0	771231..775337	+	1368	71903413	-	M28_Spy0748	-	putative cytoplasmic protein
747	 35.63	0	775337..776206	+	289	71903414	-	M28_Spy0749	-	putative cytoplasmic protein
748	 34.21	-1	776203..776544	+	113	71903415	-	M28_Spy0750	-	putative cytoplasmic protein
749	 30.45	-1	776468..777196	+	242	71903416	-	M28_Spy0751	-	hypothetical protein
750	 37.97	0	777738..778880	+	380	71903417	-	M28_Spy0752	-	transposase
751	 43.37	+1	779049..780881	+	610	71903418	lepA	M28_Spy0753	-	GTP-binding protein LepA
752	 50.35	+2	781169..782437	+	422	71903419	-	M28_Spy0754	-	collagen-like surface protein
753	 42.01	0	782623..783060	+	145	71903420	msrB	M28_Spy0755	-	methionine sulfoxide reductase B
754	 42.25	+1	783190..784209	+	339	71903421	-	M28_Spy0756	-	hypothetical protein
755	 39.44	0	784416..784841	+	141	71903422	-	M28_Spy0757	-	PTS system mannose/fructose family IIA subunit
756	 40.85	0	784860..785351	+	163	71903423	ptsB	M28_Spy0758	-	PTS system mannose/fructose family IIB subunit
757	 41.48	0	785368..786177	+	269	71903424	ptsC	M28_Spy0759	-	PTS system mannose/fructose family IIC subunit
758	 39.98	0	786174..787001	+	275	71903425	ptsD	M28_Spy0760	-	PTS system mannose/fructose family IID subunit
759	 35.58	0	787137..788786	+	549	71903426	-	M28_Spy0761	-	two-component sensor kinase
760	 34.73	0	788790..789578	+	262	71903427	-	M28_Spy0762	-	two-component response regulator
761	 35.24	0	789572..790618	+	348	71903428	-	M28_Spy0763	-	iron(III)-binding protein
762	 40.63	0	790731..792128	+	465	71903429	gabD	M28_Spy0764	-	succinate-semialdehyde dehydrogenase
763	 37.28	0	792230..794026	+	598	71903430	uvrC	M28_Spy0765	-	excinuclease ABC subunit C
764	 39.64	0	794211..794813	+	200	71903431	-	M28_Spy0766	-	NAD(P)H-dependent quinone reductase
765	 42.98	+1	794938..796347	+	469	162139404	-	M28_Spy0767	-	dipeptidase PepV
766	 42.70	+1	796415..797791	-	458	71903433	trmE	M28_Spy0768	-	tRNA modification GTPase TrmE
767	 41.12	0	798125..798625	+	166	162139403	rplJ	M28_Spy0769	-	50S ribosomal protein L10
768	 41.26	0	798690..799055	+	121	162139402	rplL	M28_Spy0770	-	50S ribosomal protein L7/L12
769	 45.39	+1	799411..799551	+	46	71903436	-	M28_Spy0771	-	hypothetical protein
770	 40.65	0	799545..799913	+	122	71903437	-	M28_Spy0772	-	IFN-response binding factor 1
771	 38.41	0	799892..800029	+	45	71903438	-	M28_Spy0773	-	hypothetical protein
772	 41.44	0	800079..800411	+	110	71903439	-	M28_Spy0774	-	DNA-cytosine methyltransferase
773	 32.86	-1	800469..800681	+	70	71903440	-	M28_Spy0775	-	relaxase
774	 32.39	-1	800724..800936	+	70	71903441	-	M28_Spy0776	-	relaxase
775	 33.97	-1	801201..801512	+	103	71903442	-	M28_Spy0777	-	relaxase
776	 35.53	0	801581..801898	+	105	71903443	srtI	M28_Spy0778	-	SrtI
777	 31.59	-1	802049..802735	+	228	71903444	srtR	M28_Spy0779	-	two-component response regulator
778	 29.00	-2	802713..804074	+	453	71903445	srtK	M28_Spy0780	-	sensor protein
779	 32.62	-1	804231..804371	+	46	71903446	srtA	M28_Spy0781	-	lantibiotic
780	 28.87	-2	804486..806276	+	596	71903447	srtT	M28_Spy0782	-	ABC transporter (ATP binding)-lantibiotic associated
781	 30.63	-1	806248..807504	+	418	71903448	-	M28_Spy0783	-	lanthionine synthetase
782	 28.92	-2	807523..810489	+	988	71903449	-	M28_Spy0784	-	serine (threonine) dehydratase
783	 31.86	-1	810438..811184	+	248	71903450	srtF	M28_Spy0785	-	lantibiotic transport ATP-binding protein
784	 28.67	-2	811190..811939	+	249	71903451	srtE	M28_Spy0786	-	lantibiotic transport permease protein
785	 27.94	-2	811942..812664	+	240	71903452	srtG	M28_Spy0787	-	lantibiotic transport permease protein
786	 32.88	-1	812855..813073	+	72	71903453	-	M28_Spy0788	-	phage associated transcriptional regulator
787	 39.81	0	813182..813397	-	71	71903454	-	M28_Spy0789	-	hypothetical protein
788	 31.06	-1	813597..813728	+	43	71903455	-	M28_Spy0790	-	integrase pseudogene
789	 30.18	-2	813750..813971	+	73	71903456	-	M28_Spy0791	-	integrase pseudogene
790	 33.33	-1	814044..814265	+	73	71903457	-	M28_Spy0792	-	integrase pseudogene
791	 35.68	0	814296..814679	+	127	71903458	-	M28_Spy0793	-	integrase pseudogene
792	 39.31	0	814822..816177	+	451	71903459	dacA1	M28_Spy0794	-	D-alanyl-D-alanine carboxypeptidase
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.