IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
631	 35.88	0	653876..656902	+	1008	71903298	-	M28_Spy0632	-	cell surface protein
632	 36.32	0	656922..657323	+	133	71903299	-	M28_Spy0633	-	putative cytoplasmic protein
633	 33.90	-1	657513..658388	-	291	71903300	czcD	M28_Spy0634	-	cobalt-zinc-cadmium resistance protein
634	 30.51	-1	658515..659045	+	176	71903301	-	M28_Spy0635	-	TetR family transcriptional regulator
635	 39.11	0	659260..659778	+	172	71903302	rimM	M28_Spy0636	-	16S rRNA-processing protein
636	 40.57	0	659768..660499	+	243	71903303	trmD	M28_Spy0637	-	tRNA (guanine-N(1)-)-methyltransferase
637	 36.86	0	660499..661491	+	330	71903304	trxB	M28_Spy0638	-	thioredoxin reductase
638	 39.75	0	661670..662728	+	352	71903305	-	M28_Spy0639	-	regulatory protein
639	 39.50	0	662741..663664	+	307	71903306	apbA	M28_Spy0640	-	2-dehydropantoate 2-reductase
640	 35.29	0	663920..664633	+	237	71903307	fruR	M28_Spy0641	-	fructose repressor
641	 40.02	0	664630..665541	+	303	71903308	fruB	M28_Spy0642	-	1-phosphofructokinase
642	 41.71	0	665538..667484	+	648	71903309	fruA	M28_Spy0643	-	PTS system, fructose-specific IIABC component
643	 37.00	0	667577..668176	+	199	71903310	mur1.1	M28_Spy0644	-	autolysin
644	 38.42	0	668328..669035	+	235	71903311	mur1.2	M28_Spy0645	-	autolysin
645	 30.83	-1	669513..669632	-	39	71903312	-	M28_Spy0647	-	hypothetical protein
646	 27.62	-2	669607..669816	-	69	71903313	-	M28_Spy0648	-	exotoxin type J fragment
647	 37.13	0	669992..671017	-	341	71903314	mac	M28_Spy0649	-	IgG-degrading protease
648	 41.24	0	671521..671697	+	58	71903315	-	M28_Spy0650	-	nucleoside diphosphate kinase
649	 34.91	0	671925..672305	+	126	71903316	-	M28_Spy0651	-	transposase
650	 37.22	0	672305..673153	+	282	71903317	-	M28_Spy0652	-	degV family protein
651	 40.28	0	673278..674486	+	402	71903318	papS	M28_Spy0653	-	tRNA CCA-pyrophosphorylase
652	 39.24	0	674483..676360	+	625	71903319	-	M28_Spy0654	-	ABC transporter ATP-binding protein uup
653	 35.95	0	676617..676769	+	50	71903320	-	M28_Spy0655	-	hypothetical protein
654	 30.14	-2	676778..676996	+	72	71903321	-	M28_Spy0656	-	hypothetical protein
655	 35.52	0	677252..677662	+	136	71903322	fms	M28_Spy0657	-	peptide deformylase
656	 35.33	0	677745..679796	-	683	71903323	-	M28_Spy0658	-	5'-nucleotidase
657	 34.87	0	679977..680627	+	216	71903324	-	M28_Spy0659	-	GTP pyrophosphokinase
658	 34.23	-1	680630..681298	+	222	71903325	-	M28_Spy0660	-	two-component response regulator
659	 34.76	0	681280..682539	+	419	71903326	-	M28_Spy0661	-	two component system histidine kinase
660	 42.78	+1	682832..683710	+	292	71903327	mvaK1	M28_Spy0662	-	mevalonate kinase
661	 40.32	0	683692..684636	+	314	71903328	mvaD	M28_Spy0663	-	diphosphomevalonate decarboxylase
662	 42.47	+1	684581..685642	+	353	71903329	mvaK2	M28_Spy0664	-	phosphomevalonate kinase
663	 42.31	+1	685539..686618	+	359	71903330	-	M28_Spy0665	-	isopentenyl pyrophosphate isomerase
664	 40.06	0	686848..688125	-	425	71903331	-	M28_Spy0666	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
665	 37.37	0	688112..689326	-	404	71903332	mvaS.1	M28_Spy0667	-	hydroxymethylglutaryl-CoA synthase
666	 35.00	0	689496..690335	+	279	162139405	thyA	M28_Spy0668	-	thymidylate synthase
667	 36.95	0	690415..690912	+	165	71903334	dyr	M28_Spy0669	-	dihydrofolate reductase
668	 35.09	0	690932..691102	+	56	71903335	-	M28_Spy0670	-	hypothetical protein
669	 38.54	0	691232..692461	+	409	71903336	clpX	M28_Spy0671	-	ATP-dependent protease ATP-binding subunit
670	 38.67	0	692471..693070	+	199	71903337	-	M28_Spy0672	-	GTPase EngB
671	 34.01	-1	693218..693961	+	247	71903338	-	M28_Spy0673	-	hypothetical protein
672	 38.71	0	694019..696118	-	699	71903339	clpL	M28_Spy0674	-	ATP-dependent protease ATP-binding subunit
673	 42.25	+1	696496..697179	+	227	71903340	rpiA	M28_Spy0675	-	ribose-5-phosphate isomerase A
674	 41.75	0	697256..698467	+	403	71903341	deoB	M28_Spy0676	-	phosphopentomutase
675	 41.16	0	698477..698923	+	148	71903342	arsC	M28_Spy0677	-	arsenate reductase family protein
676	 41.36	0	698907..699716	+	269	71903343	punA	M28_Spy0678	-	purine nucleoside phosphorylase
677	 42.15	0	700244..701014	+	256	71903344	deoD2	M28_Spy0679	-	purine nucleoside phosphorylase
678	 39.50	0	701001..701795	+	264	71903345	cpsX	M28_Spy0680	-	transcription regulator LytR
679	 39.51	0	701874..702779	-	301	71903346	cpsY	M28_Spy0681	-	LysR family transcriptional regulator
680	 36.50	0	703001..703537	+	178	71903347	-	M28_Spy0682	-	hypothetical protein
681	 41.85	0	703814..704506	+	230	71903348	pyrF	M28_Spy0683	-	orotidine 5'-phosphate decarboxylase
682	 39.37	0	704564..705193	+	209	71903349	pyrE	M28_Spy0684	-	orotate phosphoribosyltransferase
683	 42.06	0	705390..706844	+	484	71903350	amiC	M28_Spy0685	-	amidase
684	 37.11	0	706926..707825	+	299	71903351	-	M28_Spy0686	-	cystine-binding protein
685	 39.32	0	707854..708504	+	216	71903352	-	M28_Spy0687	-	cystine transport system permease protein
686	 42.05	0	708637..709290	+	217	71903353	ung	M28_Spy0688	-	uracil-DNA glycosylase
687	 40.43	0	709414..710682	+	422	71903354	pyrC	M28_Spy0689	-	dihydroorotase
688	 32.64	-1	710740..711462	-	240	71903355	-	M28_Spy0690	-	putative glycerol-3-phosphate acyltransferase PlsY
689	 41.47	0	711513..713465	+	650	71903356	parE	M28_Spy0691	-	DNA topoisomerase IV subunit B
690	 40.23	0	713550..716015	+	821	71903357	parC	M28_Spy0692	-	DNA topoisomerase IV subunit A
691	 40.17	0	716093..717160	+	355	71903358	bcaT	M28_Spy0693	-	branched-chain amino acid aminotransferase
692	 31.20	-1	717221..717454	+	77	71903359	-	M28_Spy0694	-	putative cytoplasmic protein
693	 41.13	0	717844..719049	+	401	71903360	rpsA	M28_Spy0695	-	30S ribosomal protein S1
694	 33.00	-1	719596..719898	-	100	71903361	-	M28_Spy0696	-	hypothetical protein
695	 37.89	0	720098..721084	+	328	71903362	-	M28_Spy0697	-	hypothetical protein
696	 40.62	0	721155..721346	+	63	71903363	-	M28_Spy0698	-	hypothetical protein
697	 40.57	0	721395..721781	+	128	71903364	-	M28_Spy0699	-	glutathione S-transferase
698	 38.96	0	721648..722748	+	366	71903365	-	M28_Spy0700	-	putative exfoliative toxin
699	 42.69	+1	722866..723036	-	56	71903366	-	M28_Spy0701	-	hypothetical protein
700	 43.22	+1	723170..724069	+	299	71903367	miaA	M28_Spy0702	-	tRNA delta(2)-isopentenylpyrophosphate transferase
701	 39.73	0	724130..725380	+	416	71903368	hflX	M28_Spy0703	-	GTP-binding protein
702	 37.96	0	725361..726008	+	215	71903369	-	M28_Spy0704	-	hypothetical protein
703	 40.75	0	726023..726952	+	309	71903370	elaC	M28_Spy0705	-	ribonuclease Z
704	 41.96	0	726952..727716	+	254	71903371	-	M28_Spy0706	-	short chain dehydrogenase
705	 42.02	0	727713..729923	+	736	71903372	recJ	M28_Spy0707	-	single-stranded-DNA-specific exonuclease
706	 38.92	0	730073..730591	+	172	71903373	apt	M28_Spy0708	-	adenine phosphoribosyltransferase
707	 35.82	0	730672..731355	+	227	71903374	dnaD	M28_Spy0709	-	phage protein
708	 39.27	0	731352..732008	+	218	71903375	nth	M28_Spy0710	-	endonuclease III
709	 41.92	0	732080..732766	+	228	71903376	-	M28_Spy0711	-	anthranilate synthase component I
710	 40.50	0	732750..733544	+	264	71903377	-	M28_Spy0712	-	NIF3-related protein
711	 40.83	0	733584..734690	+	368	71903378	-	M28_Spy0713	-	glycine/D-amino acid oxidase family protein
712	 42.07	0	734749..735618	+	289	71903379	cpsFO	M28_Spy0714	-	glucose-1-phosphate thymidylyltransferase
713	 40.24	0	735618..736211	+	197	71903380	cpsFP	M28_Spy0715	-	dTDP-4-dehydrorhamnose 3,5-epimerase
714	 40.63	0	736455..737495	+	346	71903381	cpsFQ	M28_Spy0716	-	dTDP-glucose 4,6-dehydratase
715	 39.62	0	737716..738192	+	158	71903382	-	M28_Spy0717	-	mutator protein T
716	 38.58	0	738250..739431	+	393	71903383	-	M28_Spy0718	-	hypothetical protein
717	 39.65	0	739403..740668	+	421	71903384	-	M28_Spy0719	-	TPR repeat-containing protein
718	 39.88	0	740727..742421	-	564	71903385	fbp	M28_Spy0720	-	fibrinogen-binding protein
719	 31.75	-1	742426..742551	+	41	71903386	-	M28_Spy0721	-	hypothetical protein
720	 38.34	0	742733..743731	+	332	71903387	-	M28_Spy0722	-	ABC transporter substrate-binding protein
721	 31.51	-1	743682..743900	+	72	71903388	-	M28_Spy0723	-	hypothetical protein
722	 36.51	0	744064..744945	+	293	71903389	-	M28_Spy0724	-	ABC transporter permease protein
723	 37.94	0	744942..745700	+	252	71903390	-	M28_Spy0725	-	ABC transporter ATP-binding protein
724	 38.69	0	745904..747565	+	553	71903391	-	M28_Spy0726	-	Zn-dependent hydrolase
725	 41.09	0	747698..748483	+	261	71903392	estA	M28_Spy0727	-	acetyl esterase
726	 35.47	0	748513..748839	+	108	71903393	-	M28_Spy0728	-	hypothetical protein
727	 40.78	0	748885..750792	+	635	71903394	-	M28_Spy0729	-	ABC transporter ATP-binding protein
728	 41.79	0	751066..752046	+	326	71903395	acoA	M28_Spy0730	-	pyruvate dehydrogenase E1 component alpha subunit
729	 42.32	+1	752102..753103	+	333	71903396	acoB	M28_Spy0731	-	pyruvate dehydrogenase E1 component beta subunit
730	 42.84	+1	753288..754697	+	469	71903397	acoC	M28_Spy0732	-	branched-chain alpha-keto acid dehydrogenase subunit E2
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.