IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
597	 37.66	0	620723..621253	+	176	71903264	infC	M28_Spy0598	-	translation initiation factor IF-3
598	 42.42	+1	621295..621492	+	65	71903265	rpmI	M28_Spy0599	-	50S ribosomal protein L35
599	 41.67	0	621551..621910	+	119	71903266	rplT	M28_Spy0600	-	50S ribosomal protein L20
600	 35.00	0	622201..624417	-	738	71903267	-	M28_Spy0601	-	phosphoglycerol transferase
601	 37.37	0	624519..625682	+	387	71903268	-	M28_Spy0602	-	methyltransferase
602	 37.41	0	625679..626365	+	228	71903269	aroD	M28_Spy0603	-	3-dehydroquinate dehydratase
603	 41.73	0	626459..627625	+	388	71903270	aroF	M28_Spy0604	-	chorismate synthase
604	 39.77	0	627686..628027	+	113	71903271	-	M28_Spy0605	-	hypothetical protein
605	 31.91	-1	628016..628156	-	46	71903272	-	M28_Spy0606	-	hypothetical protein
606	 43.46	+1	628249..629601	+	450	71903273	gor	M28_Spy0607	-	glutathione reductase
607	 40.14	0	629689..630981	-	430	71903274	folC.2	M28_Spy0608	-	dihydrofolate synthase
608	 40.69	0	630987..631448	-	153	71903275	-	M28_Spy0609	-	hypothetical protein
609	 41.38	0	631662..632804	+	380	71903276	nifS1	M28_Spy0610	-	cysteine desulfhydrase
610	 41.98	0	632816..634030	+	404	71903277	thiI	M28_Spy0611	-	thiamine biosynthesis protein ThiI
611	 37.12	0	634068..635360	+	430	71903278	capA	M28_Spy0612	-	capsule biosynthesis protein
612	 39.05	0	635574..635888	+	104	71903279	rplU	M28_Spy0613	-	50S ribosomal protein L21
613	 37.00	0	635900..636226	+	108	71903280	-	M28_Spy0614	-	hypothetical protein
614	 42.18	0	636254..636547	+	97	71903281	rpmA	M28_Spy0615	-	50S ribosomal protein L27
615	 35.96	0	636905..637819	+	304	71903282	-	M28_Spy0616	-	LysR family transcriptional regulator
616	 36.38	0	637816..638274	+	152	71903283	lsp	M28_Spy0617	-	lipoprotein signal peptidase
617	 41.53	0	638264..639154	+	296	71903284	-	M28_Spy0618	-	ribosomal large subunit pseudouridine synthase D
618	 41.76	0	639549..640070	+	173	71903285	pyrR	M28_Spy0619	-	pyrimidine regulatory protein PyrR
619	 38.81	0	640086..641345	+	419	71903286	pyrP	M28_Spy0620	-	uracil permease
620	 39.39	0	641352..642341	+	329	71903287	pyrB	M28_Spy0621	-	aspartate carbamoyltransferase catalytic subunit
621	 39.98	0	642385..643467	+	360	71903288	carA	M28_Spy0622	-	carbamoyl phosphate synthase small subunit
622	 30.30	-1	643439..643636	+	65	71903289	-	M28_Spy0623	-	hypothetical protein
623	 37.96	0	643713..646889	+	1058	162139406	carB	M28_Spy0624	-	carbamoyl phosphate synthase large subunit
624	 36.40	0	647096..648367	+	423	71903291	-	M28_Spy0625	-	periplasmic component of efflux system
625	 35.30	0	648367..649077	+	236	71903292	-	M28_Spy0626	-	ABC transporter ATP-binding protein
626	 35.54	0	649089..650309	+	406	71903293	-	M28_Spy0627	-	ABC transporter permease protein
627	 31.64	-1	650521..652296	+	591	71903294	-	M28_Spy0628	-	glycerophosphoryl diester phosphodiesterase
628	 38.83	0	652423..652695	+	90	71903295	rpsP	M28_Spy0629	-	30S ribosomal protein S16
629	 35.00	0	652705..652944	+	79	71903296	-	M28_Spy0630	-	RNA binding protein
630	 25.93	-2	652953..653060	+	35	71903297	-	M28_Spy0631	-	hypothetical protein
631	 35.88	0	653876..656902	+	1008	71903298	-	M28_Spy0632	-	cell surface protein
632	 36.32	0	656922..657323	+	133	71903299	-	M28_Spy0633	-	putative cytoplasmic protein
633	 33.90	-1	657513..658388	-	291	71903300	czcD	M28_Spy0634	-	cobalt-zinc-cadmium resistance protein
634	 30.51	-1	658515..659045	+	176	71903301	-	M28_Spy0635	-	TetR family transcriptional regulator
635	 39.11	0	659260..659778	+	172	71903302	rimM	M28_Spy0636	-	16S rRNA-processing protein
636	 40.57	0	659768..660499	+	243	71903303	trmD	M28_Spy0637	-	tRNA (guanine-N(1)-)-methyltransferase
637	 36.86	0	660499..661491	+	330	71903304	trxB	M28_Spy0638	-	thioredoxin reductase
638	 39.75	0	661670..662728	+	352	71903305	-	M28_Spy0639	-	regulatory protein
639	 39.50	0	662741..663664	+	307	71903306	apbA	M28_Spy0640	-	2-dehydropantoate 2-reductase
640	 35.29	0	663920..664633	+	237	71903307	fruR	M28_Spy0641	-	fructose repressor
641	 40.02	0	664630..665541	+	303	71903308	fruB	M28_Spy0642	-	1-phosphofructokinase
642	 41.71	0	665538..667484	+	648	71903309	fruA	M28_Spy0643	-	PTS system, fructose-specific IIABC component
643	 37.00	0	667577..668176	+	199	71903310	mur1.1	M28_Spy0644	-	autolysin
644	 38.42	0	668328..669035	+	235	71903311	mur1.2	M28_Spy0645	-	autolysin
645	 30.83	-1	669513..669632	-	39	71903312	-	M28_Spy0647	-	hypothetical protein
646	 27.62	-2	669607..669816	-	69	71903313	-	M28_Spy0648	-	exotoxin type J fragment
647	 37.13	0	669992..671017	-	341	71903314	mac	M28_Spy0649	-	IgG-degrading protease
648	 41.24	0	671521..671697	+	58	71903315	-	M28_Spy0650	-	nucleoside diphosphate kinase
649	 34.91	0	671925..672305	+	126	71903316	-	M28_Spy0651	-	transposase
650	 37.22	0	672305..673153	+	282	71903317	-	M28_Spy0652	-	degV family protein
651	 40.28	0	673278..674486	+	402	71903318	papS	M28_Spy0653	-	tRNA CCA-pyrophosphorylase
652	 39.24	0	674483..676360	+	625	71903319	-	M28_Spy0654	-	ABC transporter ATP-binding protein uup
653	 35.95	0	676617..676769	+	50	71903320	-	M28_Spy0655	-	hypothetical protein
654	 30.14	-2	676778..676996	+	72	71903321	-	M28_Spy0656	-	hypothetical protein
655	 35.52	0	677252..677662	+	136	71903322	fms	M28_Spy0657	-	peptide deformylase
656	 35.33	0	677745..679796	-	683	71903323	-	M28_Spy0658	-	5'-nucleotidase
657	 34.87	0	679977..680627	+	216	71903324	-	M28_Spy0659	-	GTP pyrophosphokinase
658	 34.23	-1	680630..681298	+	222	71903325	-	M28_Spy0660	-	two-component response regulator
659	 34.76	0	681280..682539	+	419	71903326	-	M28_Spy0661	-	two component system histidine kinase
660	 42.78	+1	682832..683710	+	292	71903327	mvaK1	M28_Spy0662	-	mevalonate kinase
661	 40.32	0	683692..684636	+	314	71903328	mvaD	M28_Spy0663	-	diphosphomevalonate decarboxylase
662	 42.47	+1	684581..685642	+	353	71903329	mvaK2	M28_Spy0664	-	phosphomevalonate kinase
663	 42.31	+1	685539..686618	+	359	71903330	-	M28_Spy0665	-	isopentenyl pyrophosphate isomerase
664	 40.06	0	686848..688125	-	425	71903331	-	M28_Spy0666	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
665	 37.37	0	688112..689326	-	404	71903332	mvaS.1	M28_Spy0667	-	hydroxymethylglutaryl-CoA synthase
666	 35.00	0	689496..690335	+	279	162139405	thyA	M28_Spy0668	-	thymidylate synthase
667	 36.95	0	690415..690912	+	165	71903334	dyr	M28_Spy0669	-	dihydrofolate reductase
668	 35.09	0	690932..691102	+	56	71903335	-	M28_Spy0670	-	hypothetical protein
669	 38.54	0	691232..692461	+	409	71903336	clpX	M28_Spy0671	-	ATP-dependent protease ATP-binding subunit
670	 38.67	0	692471..693070	+	199	71903337	-	M28_Spy0672	-	GTPase EngB
671	 34.01	-1	693218..693961	+	247	71903338	-	M28_Spy0673	-	hypothetical protein
672	 38.71	0	694019..696118	-	699	71903339	clpL	M28_Spy0674	-	ATP-dependent protease ATP-binding subunit
673	 42.25	+1	696496..697179	+	227	71903340	rpiA	M28_Spy0675	-	ribose-5-phosphate isomerase A
674	 41.75	0	697256..698467	+	403	71903341	deoB	M28_Spy0676	-	phosphopentomutase
675	 41.16	0	698477..698923	+	148	71903342	arsC	M28_Spy0677	-	arsenate reductase family protein
676	 41.36	0	698907..699716	+	269	71903343	punA	M28_Spy0678	-	purine nucleoside phosphorylase
677	 42.15	0	700244..701014	+	256	71903344	deoD2	M28_Spy0679	-	purine nucleoside phosphorylase
678	 39.50	0	701001..701795	+	264	71903345	cpsX	M28_Spy0680	-	transcription regulator LytR
679	 39.51	0	701874..702779	-	301	71903346	cpsY	M28_Spy0681	-	LysR family transcriptional regulator
680	 36.50	0	703001..703537	+	178	71903347	-	M28_Spy0682	-	hypothetical protein
681	 41.85	0	703814..704506	+	230	71903348	pyrF	M28_Spy0683	-	orotidine 5'-phosphate decarboxylase
682	 39.37	0	704564..705193	+	209	71903349	pyrE	M28_Spy0684	-	orotate phosphoribosyltransferase
683	 42.06	0	705390..706844	+	484	71903350	amiC	M28_Spy0685	-	amidase
684	 37.11	0	706926..707825	+	299	71903351	-	M28_Spy0686	-	cystine-binding protein
685	 39.32	0	707854..708504	+	216	71903352	-	M28_Spy0687	-	cystine transport system permease protein
686	 42.05	0	708637..709290	+	217	71903353	ung	M28_Spy0688	-	uracil-DNA glycosylase
687	 40.43	0	709414..710682	+	422	71903354	pyrC	M28_Spy0689	-	dihydroorotase
688	 32.64	-1	710740..711462	-	240	71903355	-	M28_Spy0690	-	putative glycerol-3-phosphate acyltransferase PlsY
689	 41.47	0	711513..713465	+	650	71903356	parE	M28_Spy0691	-	DNA topoisomerase IV subunit B
690	 40.23	0	713550..716015	+	821	71903357	parC	M28_Spy0692	-	DNA topoisomerase IV subunit A
691	 40.17	0	716093..717160	+	355	71903358	bcaT	M28_Spy0693	-	branched-chain amino acid aminotransferase
692	 31.20	-1	717221..717454	+	77	71903359	-	M28_Spy0694	-	putative cytoplasmic protein
693	 41.13	0	717844..719049	+	401	71903360	rpsA	M28_Spy0695	-	30S ribosomal protein S1
694	 33.00	-1	719596..719898	-	100	71903361	-	M28_Spy0696	-	hypothetical protein
695	 37.89	0	720098..721084	+	328	71903362	-	M28_Spy0697	-	hypothetical protein
696	 40.62	0	721155..721346	+	63	71903363	-	M28_Spy0698	-	hypothetical protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.