IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 33.78	-1	561278..561949	+	223	71903210	sagE	M28_Spy0544	-	streptolysin S putative self-immunity protein
544	 35.23	0	561946..562629	+	227	71903211	sagF	M28_Spy0545	-	streptolysin S biosynthesis protein
545	 36.04	0	562652..563575	+	307	71903212	sagG	M28_Spy0546	-	streptolysin S export ATP-binding protein
546	 32.54	-1	563584..564711	+	375	71903213	sagH	M28_Spy0547	-	streptolysin S export transmembrane protein
547	 32.80	-1	564708..565826	+	372	71903214	sagI	M28_Spy0548	-	streptolysin S export transmembrane protein
548	 37.91	0	566400..569132	+	910	71903215	-	M28_Spy0549	-	endonuclease/exonuclease/phosphatase family protein
549	 32.93	-1	569410..569910	+	166	71903216	-	M28_Spy0550	-	hypothetical protein
550	 40.48	0	570104..572062	+	652	71903217	ligA	M28_Spy0551	-	NAD-dependent DNA ligase LigA
551	 37.44	0	572076..573098	+	340	71903218	-	M28_Spy0552	-	putative lipid kinase
552	 38.38	0	573490..573687	+	65	71903219	atpE	M28_Spy0553	-	F0F1 ATP synthase subunit C
553	 38.49	0	573722..574438	+	238	71903220	atpB	M28_Spy0554	-	F0F1 ATP synthase subunit A
554	 38.18	0	574456..574950	+	164	71903221	atpF	M28_Spy0555	-	F0F1 ATP synthase subunit B
555	 34.08	-1	574950..575486	+	178	71903222	atpH	M28_Spy0556	-	F0F1 ATP synthase subunit delta
556	 42.15	0	575502..577010	+	502	71903223	atpA	M28_Spy0557	-	F0F1 ATP synthase subunit alpha
557	 37.67	0	577026..577901	+	291	71903224	atpG	M28_Spy0558	-	F0F1 ATP synthase subunit gamma
558	 42.86	+1	578063..579469	+	468	71903225	atpD	M28_Spy0559	-	F0F1 ATP synthase subunit beta
559	 42.21	0	579482..579898	+	138	71903226	atpC	M28_Spy0560	-	F0F1 ATP synthase subunit epsilon
560	 35.27	0	580164..580421	+	85	71903227	-	M28_Spy0561	-	hypothetical protein
561	 41.51	0	580486..581757	+	423	71903228	murA	M28_Spy0562	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
562	 33.33	-1	581761..581949	+	62	71903229	epuA	M28_Spy0563	-	EpuA
563	 41.62	0	581973..582563	+	196	71903230	-	M28_Spy0564	-	DNA-entry nuclease
564	 43.56	+1	582547..582849	+	100	71903231	endA	M28_Spy0565	-	DNA-entry nuclease
565	 41.48	0	583132..584175	+	347	162139408	pheS	M28_Spy0566	-	phenylalanyl-tRNA synthetase subunit alpha
566	 42.01	0	584370..586790	+	806	71903233	pheT	M28_Spy0567	-	phenylalanyl-tRNA synthetase subunit beta
567	 39.61	0	586864..587277	+	137	71903234	-	M28_Spy0568	-	salt-stress induced protein
568	 39.02	0	587270..587656	+	128	71903235	-	M28_Spy0569	-	hypothetical protein
569	 35.56	0	587729..588805	+	358	71903236	-	M28_Spy0570	-	ABC transporter permease protein
570	 41.37	0	588812..589483	+	223	71903237	-	M28_Spy0571	-	ABC transporter ATP-binding protein
571	 44.12	+1	589588..590505	-	305	71903238	-	M28_Spy0572	-	neutral zinc metallopeptidase family protein
572	 34.86	0	590656..593871	+	1071	71903239	rexB	M28_Spy0573	-	ATP-dependent nuclease subunit B
573	 36.22	0	593832..597500	+	1222	71903240	rexA	M28_Spy0574	-	ATP-dependent nuclease subunit A
574	 35.36	0	597616..598452	+	278	71903241	-	M28_Spy0575	-	arginine-binding protein
575	 36.72	0	598593..598769	+	58	162139407	rpsU	M28_Spy0576	-	30S ribosomal protein S21
576	 35.81	0	598897..599259	-	120	71903243	mscL	M28_Spy0577	-	large-conductance mechanosensitive channel
577	 38.57	0	599389..601203	+	604	71903244	dnaG	M28_Spy0578	-	DNA primase
578	 38.56	0	601212..602321	+	369	71903245	rpoD	M28_Spy0579	-	RNA polymerase sigma factor RpoD
579	 39.82	0	602557..602895	+	112	71903246	-	M28_Spy0580	-	putative cytoplasmic protein
580	 40.33	0	602973..603887	+	304	71903247	rmlD	M28_Spy0581	-	dTDP-4-dehydrorhamnose reductase
581	 39.22	0	604006..605160	+	384	71903248	rgpAc	M28_Spy0582	-	alpha-(1,2)-rhamnosyltransferase
582	 37.62	0	605150..606082	+	310	71903249	rgpBc	M28_Spy0583	-	alpha-L-Rha alpha-1,3-L-rhamnosyltransferase
583	 33.96	-1	606085..606888	+	267	71903250	rgpCc	M28_Spy0584	-	polysaccharide export ABC transporter permease protein
584	 34.99	0	606888..608093	+	401	71903251	rgpDc	M28_Spy0585	-	polysaccharide export ATP-binding protein
585	 32.44	-1	608118..609125	+	335	71903252	rgpEc	M28_Spy0586	-	glycosyltransferase
586	 31.67	-1	609122..610867	+	581	71903253	rgpFc	M28_Spy0587	-	alpha-L-Rha alpha-1,2-L-rhamnosyltransferase
587	 32.00	-1	610864..613338	+	824	71903254	-	M28_Spy0588	-	phosphoglycerol transferase
588	 35.92	0	613517..614212	+	231	71903255	-	M28_Spy0589	-	glycosyltransferase involved in cell wall biogenesis
589	 26.90	-2	614214..614555	+	113	71903256	-	M28_Spy0590	-	hypothetical protein
590	 29.99	-2	614548..615834	+	428	71903257	amrA	M28_Spy0591	-	transcriptional activator
591	 30.06	-2	615815..617311	+	498	71903258	-	M28_Spy0592	-	hypothetical protein
592	 38.92	0	617393..618628	+	411	71903259	pepT	M28_Spy0593	-	peptidase T
593	 31.90	-1	618669..619157	+	162	71903260	ebsA	M28_Spy0594	-	pore forming protein
594	 37.37	0	619144..619341	-	65	71903261	-	M28_Spy0595	-	ferredoxin
595	 38.57	0	619390..619866	+	158	71903262	-	M28_Spy0596	-	hypothetical protein
596	 40.23	0	619881..620561	+	226	71903263	cmk	M28_Spy0597	-	cytidylate kinase
597	 37.66	0	620723..621253	+	176	71903264	infC	M28_Spy0598	-	translation initiation factor IF-3
598	 42.42	+1	621295..621492	+	65	71903265	rpmI	M28_Spy0599	-	50S ribosomal protein L35
599	 41.67	0	621551..621910	+	119	71903266	rplT	M28_Spy0600	-	50S ribosomal protein L20
600	 35.00	0	622201..624417	-	738	71903267	-	M28_Spy0601	-	phosphoglycerol transferase
601	 37.37	0	624519..625682	+	387	71903268	-	M28_Spy0602	-	methyltransferase
602	 37.41	0	625679..626365	+	228	71903269	aroD	M28_Spy0603	-	3-dehydroquinate dehydratase
603	 41.73	0	626459..627625	+	388	71903270	aroF	M28_Spy0604	-	chorismate synthase
604	 39.77	0	627686..628027	+	113	71903271	-	M28_Spy0605	-	hypothetical protein
605	 31.91	-1	628016..628156	-	46	71903272	-	M28_Spy0606	-	hypothetical protein
606	 43.46	+1	628249..629601	+	450	71903273	gor	M28_Spy0607	-	glutathione reductase
607	 40.14	0	629689..630981	-	430	71903274	folC.2	M28_Spy0608	-	dihydrofolate synthase
608	 40.69	0	630987..631448	-	153	71903275	-	M28_Spy0609	-	hypothetical protein
609	 41.38	0	631662..632804	+	380	71903276	nifS1	M28_Spy0610	-	cysteine desulfhydrase
610	 41.98	0	632816..634030	+	404	71903277	thiI	M28_Spy0611	-	thiamine biosynthesis protein ThiI
611	 37.12	0	634068..635360	+	430	71903278	capA	M28_Spy0612	-	capsule biosynthesis protein
612	 39.05	0	635574..635888	+	104	71903279	rplU	M28_Spy0613	-	50S ribosomal protein L21
613	 37.00	0	635900..636226	+	108	71903280	-	M28_Spy0614	-	hypothetical protein
614	 42.18	0	636254..636547	+	97	71903281	rpmA	M28_Spy0615	-	50S ribosomal protein L27
615	 35.96	0	636905..637819	+	304	71903282	-	M28_Spy0616	-	LysR family transcriptional regulator
616	 36.38	0	637816..638274	+	152	71903283	lsp	M28_Spy0617	-	lipoprotein signal peptidase
617	 41.53	0	638264..639154	+	296	71903284	-	M28_Spy0618	-	ribosomal large subunit pseudouridine synthase D
618	 41.76	0	639549..640070	+	173	71903285	pyrR	M28_Spy0619	-	pyrimidine regulatory protein PyrR
619	 38.81	0	640086..641345	+	419	71903286	pyrP	M28_Spy0620	-	uracil permease
620	 39.39	0	641352..642341	+	329	71903287	pyrB	M28_Spy0621	-	aspartate carbamoyltransferase catalytic subunit
621	 39.98	0	642385..643467	+	360	71903288	carA	M28_Spy0622	-	carbamoyl phosphate synthase small subunit
622	 30.30	-1	643439..643636	+	65	71903289	-	M28_Spy0623	-	hypothetical protein
623	 37.96	0	643713..646889	+	1058	162139406	carB	M28_Spy0624	-	carbamoyl phosphate synthase large subunit
624	 36.40	0	647096..648367	+	423	71903291	-	M28_Spy0625	-	periplasmic component of efflux system
625	 35.30	0	648367..649077	+	236	71903292	-	M28_Spy0626	-	ABC transporter ATP-binding protein
626	 35.54	0	649089..650309	+	406	71903293	-	M28_Spy0627	-	ABC transporter permease protein
627	 31.64	-1	650521..652296	+	591	71903294	-	M28_Spy0628	-	glycerophosphoryl diester phosphodiesterase
628	 38.83	0	652423..652695	+	90	71903295	rpsP	M28_Spy0629	-	30S ribosomal protein S16
629	 35.00	0	652705..652944	+	79	71903296	-	M28_Spy0630	-	RNA binding protein
630	 25.93	-2	652953..653060	+	35	71903297	-	M28_Spy0631	-	hypothetical protein
631	 35.88	0	653876..656902	+	1008	71903298	-	M28_Spy0632	-	cell surface protein
632	 36.32	0	656922..657323	+	133	71903299	-	M28_Spy0633	-	putative cytoplasmic protein
633	 33.90	-1	657513..658388	-	291	71903300	czcD	M28_Spy0634	-	cobalt-zinc-cadmium resistance protein
634	 30.51	-1	658515..659045	+	176	71903301	-	M28_Spy0635	-	TetR family transcriptional regulator
635	 39.11	0	659260..659778	+	172	71903302	rimM	M28_Spy0636	-	16S rRNA-processing protein
636	 40.57	0	659768..660499	+	243	71903303	trmD	M28_Spy0637	-	tRNA (guanine-N(1)-)-methyltransferase
637	 36.86	0	660499..661491	+	330	71903304	trxB	M28_Spy0638	-	thioredoxin reductase
638	 39.75	0	661670..662728	+	352	71903305	-	M28_Spy0639	-	regulatory protein
639	 39.50	0	662741..663664	+	307	71903306	apbA	M28_Spy0640	-	2-dehydropantoate 2-reductase
640	 35.29	0	663920..664633	+	237	71903307	fruR	M28_Spy0641	-	fructose repressor
641	 40.02	0	664630..665541	+	303	71903308	fruB	M28_Spy0642	-	1-phosphofructokinase
642	 41.71	0	665538..667484	+	648	71903309	fruA	M28_Spy0643	-	PTS system, fructose-specific IIABC component
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.