IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
472	 38.30	0	477277..477417	-	46	71903139	-	M28_Spy0473	-	hypothetical protein
473	 42.10	0	477553..479058	-	501	71903140	lysS	M28_Spy0474	-	lysyl-tRNA synthetase
474	 39.31	0	479220..480122	+	300	71903141	-	M28_Spy0475	-	HAD superfamily hydrolase
475	 39.58	0	480230..480853	-	207	71903142	-	M28_Spy0476	-	phosphoglycerate mutase
476	 37.29	0	481194..481673	-	159	71903143	-	M28_Spy0477	-	transcriptional regulator
477	 39.90	0	481763..482371	-	202	71903144	-	M28_Spy0478	-	thiamine transporter
478	 36.28	0	482595..483443	-	282	71903145	-	M28_Spy0479	-	N-acetylmuramoyl-L-alanine amidase
479	 40.67	0	483768..484271	+	167	71903146	-	M28_Spy0480	-	integral membrane protein
480	 36.98	0	484255..484638	+	127	71903147	-	M28_Spy0481	-	hypothetical protein
481	 39.35	0	484685..485083	-	132	71903148	-	M28_Spy0482	-	glutathione peroxidase
482	 41.65	0	485156..487030	-	624	71903149	pepF	M28_Spy0483	-	oligoendopeptidase F
483	 39.09	0	487099..489912	+	937	71903150	ppc	M28_Spy0484	-	phosphoenolpyruvate carboxylase
484	 36.63	0	490052..491356	+	434	71903151	ftsW	M28_Spy0485	-	cell division protein
485	 37.59	0	491373..491513	-	46	71903152	-	M28_Spy0486	-	putative cytoplasmic protein
486	 43.86	+1	491710..492906	+	398	162139409	tuf	M28_Spy0487	-	elongation factor Tu
487	 42.29	+1	493147..493905	+	252	71903154	tpiA	M28_Spy0488	-	triosephosphate isomerase
488	 36.33	0	494004..495239	-	411	71903155	-	M28_Spy0489	-	methicillin resistance expression factor
489	 39.29	0	495226..496467	-	413	71903156	murM	M28_Spy0490	-	UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase
490	 40.99	0	496452..497261	-	269	71903157	-	M28_Spy0491	-	HAD superfamily hydrolase
491	 39.74	0	497412..497645	-	77	71903158	-	M28_Spy0492	-	putative cytoplasmic protein
492	 41.09	0	497717..499018	-	433	71903159	-	M28_Spy0493	-	dGTP triphosphohydrolase
493	 39.02	0	499100..499486	+	128	71903160	-	M28_Spy0494	-	putative cytoplasmic protein
494	 42.21	0	499716..502397	+	893	71903161	pacL	M28_Spy0495	-	calcium-transporting ATPase
495	 36.05	0	502481..503512	-	343	71903162	regR	M28_Spy0496	-	LacI family transcription regulator
496	 40.71	0	503540..505465	-	641	71903163	-	M28_Spy0497	-	oligohyaluronate lyase
497	 38.89	0	505533..506414	-	293	71903164	agaD	M28_Spy0498	-	PTS system, N-acetylgalactosamine-specific IID component
498	 43.55	+1	506341..507123	-	260	71903165	-	M28_Spy0499	-	PTS system, N-acetylgalactosamine-specific IIC component
499	 41.31	0	507142..507630	-	162	71903166	agaV	M28_Spy0500	-	PTS system, N-acetylgalactosamine-specific IIB component
500	 43.17	+1	507666..508865	-	399	71903167	-	M28_Spy0501	-	unsaturated glucuronyl hydrolase
501	 42.24	0	508865..509302	-	145	71903168	-	M28_Spy0502	-	PTS system, N-acetylgalactosamine-specific IIA component
502	 41.51	0	509637..510431	+	264	71903169	idnO	M28_Spy0503	-	gluconate 5-dehydrogenase
503	 41.74	0	510456..511097	+	213	71903170	-	M28_Spy0504	-	hypothetical protein
504	 43.80	+1	511087..512127	+	346	71903171	-	M28_Spy0505	-	2-dehydro-3-deoxygluconokinase
505	 41.59	0	512114..512767	+	217	71903172	kgdA	M28_Spy0506	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
506	 36.99	0	513057..513713	+	218	71903173	-	M28_Spy0507	-	beta-phosphoglucomutase
507	 36.73	0	514358..515533	+	391	71903174	-	M28_Spy0508	-	iron-sulfur cluster-binding protein
508	 39.55	0	515687..516700	+	337	71903175	prfB	M28_Spy0509	-	peptide chain release factor 2
509	 40.69	0	516719..517411	+	230	71903176	ftsE	M28_Spy0510	-	cell division ATP-binding protein
510	 35.83	0	517374..518333	+	319	71903177	ftsX	M28_Spy0511	-	cell division protein
511	 36.91	0	518643..519341	-	232	71903178	-	M28_Spy0512	-	hydroxyacylglutathione hydrolase
512	 39.27	0	519482..520273	+	263	71903179	-	M28_Spy0513	-	acetoin reductase
513	 38.01	0	520381..522882	+	833	71903180	dinG	M28_Spy0514	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
514	 42.21	0	523217..524410	+	397	71903181	aspC	M28_Spy0515	-	aspartate aminotransferase
515	 38.01	0	524440..525786	+	448	71903182	asnC	M28_Spy0516	-	asparaginyl-tRNA synthetase
516	 41.64	0	526201..527091	+	296	71903183	-	M28_Spy0517	-	hypothetical protein
517	 41.92	0	527088..528065	+	325	71903184	-	M28_Spy0518	-	transporter
518	 39.69	0	528062..528973	+	303	71903185	-	M28_Spy0519	-	putative cytoplasmic protein
519	 42.85	+1	529106..530503	+	465	71903186	pepD	M28_Spy0520	-	dipeptidase
520	 38.63	0	530655..532202	+	515	71903187	-	M28_Spy0521	-	high-affinity zinc uptake system protein ZnuA precursor
521	 37.70	0	532341..533072	+	243	71903188	-	M28_Spy0522	-	GntR family transcriptional regulator
522	 42.42	+1	533092..534291	+	399	71903189	agaS	M28_Spy0523	-	galactosamine-6-phosphate deaminase (isomerizing)
523	 41.00	0	534388..534648	-	86	71903190	rpmE2	M28_Spy0524	-	50S ribosomal protein L31 type B
524	 41.51	0	534763..535704	-	313	71903191	-	M28_Spy0525	-	phosphoesterase, DHH family protein
525	 40.00	0	536098..536547	+	149	71903192	-	M28_Spy0526	-	flavodoxin
526	 40.00	0	536722..537006	+	94	71903193	-	M28_Spy0527	-	hypothetical protein
527	 42.59	+1	536987..538261	+	424	71903194	-	M28_Spy0528	-	chloride channel protein
528	 44.54	+1	538376..538723	+	115	71903195	rplS	M28_Spy0529	-	50S ribosomal protein L19
529	 33.80	-1	539084..539299	-	71	71903196	-	M28_Spy0530	-	DNA integration/recombination/invertion protein
530	 38.07	0	539737..540306	+	189	71903197	-	M28_Spy0531	-	DNA gyrase related protein
531	 39.89	0	540307..542259	+	650	71903198	gyrB	M28_Spy0532	-	DNA gyrase subunit B
532	 37.10	0	542627..544351	+	574	71903199	-	M28_Spy0533	-	septation ring formation regulator EzrA
533	 34.42	0	544483..544941	-	152	71903200	-	M28_Spy0534	-	putative cytoplasmic protein
534	 41.67	0	545168..546475	+	435	71903201	eno	M28_Spy0535	-	phosphopyruvate hydratase
535	 40.47	0	547001..547645	-	214	71903202	-	M28_Spy0536	-	transposase
536	 38.10	0	547639..547890	-	83	71903203	-	M28_Spy0537	-	transposase
537	 38.39	0	548265..549806	-	513	71903204	-	M28_Spy0538	-	transcriptional regulator
538	 38.40	0	550352..556672	+	2106	71903205	epf	M28_Spy0539	-	putative extracellular matrix binding protein
539	 39.51	0	557537..557698	+	53	71903206	sagA	M28_Spy0540	-	streptolysin S precursor
540	 34.17	-1	557920..558870	+	316	71903207	sagB	M28_Spy0541	-	streptolysin S biosynthesis protein
541	 34.94	0	558867..559925	+	352	71903208	sagC	M28_Spy0542	-	streptolysin S biosynthesis protein
542	 36.35	0	559945..561303	+	452	71903209	sagD	M28_Spy0543	-	streptolysin S biosynthesis protein
543	 33.78	-1	561278..561949	+	223	71903210	sagE	M28_Spy0544	-	streptolysin S putative self-immunity protein
544	 35.23	0	561946..562629	+	227	71903211	sagF	M28_Spy0545	-	streptolysin S biosynthesis protein
545	 36.04	0	562652..563575	+	307	71903212	sagG	M28_Spy0546	-	streptolysin S export ATP-binding protein
546	 32.54	-1	563584..564711	+	375	71903213	sagH	M28_Spy0547	-	streptolysin S export transmembrane protein
547	 32.80	-1	564708..565826	+	372	71903214	sagI	M28_Spy0548	-	streptolysin S export transmembrane protein
548	 37.91	0	566400..569132	+	910	71903215	-	M28_Spy0549	-	endonuclease/exonuclease/phosphatase family protein
549	 32.93	-1	569410..569910	+	166	71903216	-	M28_Spy0550	-	hypothetical protein
550	 40.48	0	570104..572062	+	652	71903217	ligA	M28_Spy0551	-	NAD-dependent DNA ligase LigA
551	 37.44	0	572076..573098	+	340	71903218	-	M28_Spy0552	-	putative lipid kinase
552	 38.38	0	573490..573687	+	65	71903219	atpE	M28_Spy0553	-	F0F1 ATP synthase subunit C
553	 38.49	0	573722..574438	+	238	71903220	atpB	M28_Spy0554	-	F0F1 ATP synthase subunit A
554	 38.18	0	574456..574950	+	164	71903221	atpF	M28_Spy0555	-	F0F1 ATP synthase subunit B
555	 34.08	-1	574950..575486	+	178	71903222	atpH	M28_Spy0556	-	F0F1 ATP synthase subunit delta
556	 42.15	0	575502..577010	+	502	71903223	atpA	M28_Spy0557	-	F0F1 ATP synthase subunit alpha
557	 37.67	0	577026..577901	+	291	71903224	atpG	M28_Spy0558	-	F0F1 ATP synthase subunit gamma
558	 42.86	+1	578063..579469	+	468	71903225	atpD	M28_Spy0559	-	F0F1 ATP synthase subunit beta
559	 42.21	0	579482..579898	+	138	71903226	atpC	M28_Spy0560	-	F0F1 ATP synthase subunit epsilon
560	 35.27	0	580164..580421	+	85	71903227	-	M28_Spy0561	-	hypothetical protein
561	 41.51	0	580486..581757	+	423	71903228	murA	M28_Spy0562	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
562	 33.33	-1	581761..581949	+	62	71903229	epuA	M28_Spy0563	-	EpuA
563	 41.62	0	581973..582563	+	196	71903230	-	M28_Spy0564	-	DNA-entry nuclease
564	 43.56	+1	582547..582849	+	100	71903231	endA	M28_Spy0565	-	DNA-entry nuclease
565	 41.48	0	583132..584175	+	347	162139408	pheS	M28_Spy0566	-	phenylalanyl-tRNA synthetase subunit alpha
566	 42.01	0	584370..586790	+	806	71903233	pheT	M28_Spy0567	-	phenylalanyl-tRNA synthetase subunit beta
567	 39.61	0	586864..587277	+	137	71903234	-	M28_Spy0568	-	salt-stress induced protein
568	 39.02	0	587270..587656	+	128	71903235	-	M28_Spy0569	-	hypothetical protein
569	 35.56	0	587729..588805	+	358	71903236	-	M28_Spy0570	-	ABC transporter permease protein
570	 41.37	0	588812..589483	+	223	71903237	-	M28_Spy0571	-	ABC transporter ATP-binding protein
571	 44.12	+1	589588..590505	-	305	71903238	-	M28_Spy0572	-	neutral zinc metallopeptidase family protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.