IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
182	 41.33	0	197133..198482	+	449	71902849	pgi	M28_Spy0183	-	glucose-6-phosphate isomerase
183	 35.06	0	198831..200339	-	502	71902850	-	M28_Spy0184	-	RofA-related transcriptional regulator
184	 36.11	0	200892..200999	+	35	71902851	-	M28_Spy0185	-	putative cytoplasmic protein
185	 37.95	0	201027..201698	+	223	71902852	-	M28_Spy0186	-	integral membrane protein
186	 38.52	0	201797..202702	-	301	71902853	hasC.2	M28_Spy0187	-	UTP-glucose-1-phosphate uridylyltransferase
187	 42.77	+1	202729..203745	-	338	71902854	gpsA	M28_Spy0188	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
188	 34.44	0	204043..204492	+	149	71902855	-	M28_Spy0189	-	MarR family transcriptional regulator
189	 38.49	0	204485..206191	+	568	71902856	-	M28_Spy0190	-	ABC transporter ATP-binding and permease protein
190	 40.94	0	206191..207978	+	595	71902857	-	M28_Spy0191	-	ABC transporter ATP-binding and permease protein
191	 44.14	+1	208096..208863	+	255	71902858	-	M28_Spy0192	-	putative cytoplasmic protein
192	 42.95	+1	208973..209419	+	148	71902859	dut	M28_Spy0193	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
193	 44.64	+1	209500..210861	+	453	71902860	radA	M28_Spy0194	-	DNA repair protein RadA
194	 46.91	+2	211047..211547	+	166	71902861	-	M28_Spy0195	-	carbonic anhydrase
195	 37.75	0	211642..212388	+	248	71902862	-	M28_Spy0196	-	hypothetical protein
196	 41.08	0	212571..214016	+	481	71902863	gltX	M28_Spy0197	-	glutamyl-tRNA synthetase
197	 33.18	-1	214411..215757	+	448	71902864	fasB	M28_Spy0198	-	sensory transduction protein kinase
198	 32.09	-1	215754..217037	+	427	71902865	fasC	M28_Spy0199	-	sensory transduction protein kinase
199	 35.49	0	217041..217781	+	246	71902866	fasA	M28_Spy0200	-	response regulator
200	 38.06	0	218321..218680	+	119	71902867	rnpA	M28_Spy0201	-	ribonuclease P
201	 40.46	0	218646..219473	+	275	71902868	-	M28_Spy0202	-	hypothetical protein
202	 41.42	0	219485..220399	+	304	71902869	-	M28_Spy0203	-	Jag protein
203	 34.96	0	220484..220606	+	40	71902870	-	M28_Spy0204	-	hypothetical protein
204	 44.44	+1	220714..220848	+	44	71902871	rpmH	M28_Spy0205	-	50S ribosomal protein L34
205	 45.11	+1	221122..221826	+	234	71902872	-	M28_Spy0206	-	N-acetylmannosamine-6-phosphate 2-epimerase
206	 39.77	0	221875..223194	+	439	71902873	-	M28_Spy0207	-	N-acetylneuraminate-binding protein
207	 37.88	0	223195..224184	+	329	71902874	-	M28_Spy0208	-	N-acetylneuraminate transport system permease protein
208	 41.64	0	224197..225027	+	276	71902875	-	M28_Spy0209	-	N-acetylneuraminate transport system permease protein
209	 38.76	0	225184..225846	+	220	71902876	-	M28_Spy0210	-	hypothetical protein
210	 43.39	+1	225858..226772	+	304	71902877	nanH	M28_Spy0211	-	N-acetylneuraminate lyase
211	 41.53	0	226794..227732	+	312	71902878	-	M28_Spy0212	-	N-acetylmannosamine kinase
212	 38.75	0	227843..228673	-	276	71902879	-	M28_Spy0213	-	RpiR family transcriptional regulator
213	 42.91	+1	228862..229749	+	295	71902880	tatD	M28_Spy0214	-	sec-independent protein translocase protein
214	 45.42	+1	229700..230311	+	203	71902881	-	M28_Spy0215	-	ribonuclease M5
215	 41.81	0	230401..231297	+	298	71902882	ksgA	M28_Spy0216	-	dimethyladenosine transferase
216	 43.30	+1	231721..232593	+	290	71902883	-	M28_Spy0217	-	ribosome-associated GTPase
217	 43.29	+1	232603..233265	+	220	71902884	rpe	M28_Spy0218	-	ribulose-phosphate 3-epimerase
218	 40.44	0	233258..233890	+	210	71902885	-	M28_Spy0219	-	thiamin pyrophosphokinase
219	 40.96	0	233892..235163	+	423	71902886	-	M28_Spy0220	-	rmuC family protein
220	 39.94	0	235153..236091	+	312	71902887	cbf	M28_Spy0221	-	CMP-binding factor
221	 37.14	0	236358..237197	+	279	71902888	purR	M28_Spy0222	-	purine operon repressor
222	 39.51	0	237170..239809	+	879	71902889	prgA	M28_Spy0223	-	surface exclusion protein
223	 44.20	+1	240017..240430	+	137	71902890	rpsL	M28_Spy0224	-	30S ribosomal protein S12
224	 44.16	+1	240451..240921	+	156	71902891	rpsG	M28_Spy0225	-	30S ribosomal protein S7
225	 43.00	+1	241288..243366	+	692	71902892	fus	M28_Spy0226	-	elongation factor G
226	 41.04	0	243687..244724	+	345	71902893	plr	M28_Spy0227	-	glyceraldehyde-3-phosphate dehydrogenase
227	 35.04	0	244950..245066	-	38	71902894	-	M28_Spy0228	-	hypothetical protein
228	 41.36	0	245208..246017	-	269	71902895	-	M28_Spy0229	-	amino acid transport ATP-binding protein
229	 42.60	+1	245941..247527	-	528	71902896	-	M28_Spy0230	-	ABC transporter amino acid-binding protein
230	 39.81	0	247707..248678	+	323	71902897	-	M28_Spy0231	-	hypothetical protein
231	 42.01	0	248675..249631	+	318	71902898	-	M28_Spy0232	-	hypothetical protein
232	 37.14	0	249697..250536	+	279	71902899	uppP	M28_Spy0233	-	undecaprenyl pyrophosphate phosphatase
233	 36.33	0	250676..251443	+	255	71902900	mecA	M28_Spy0234	-	adaptor protein
234	 37.44	0	251450..252619	+	389	71902901	-	M28_Spy0235	-	undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase
235	 33.33	-1	252589..252714	+	41	71902902	rgpG	M28_Spy0236	-	putative cytoplasmic protein
236	 40.73	0	252741..253511	+	256	71902903	-	M28_Spy0237	-	ABC transporter ATP-binding protein
237	 42.52	+1	253606..254868	+	420	71902904	-	M28_Spy0238	-	ABC transporter-associated protein
238	 43.03	+1	254899..256125	+	408	71902905	nifS3	M28_Spy0239	-	cysteine desulfhydrase
239	 42.92	+1	256112..256591	+	159	71902906	nifU	M28_Spy0240	-	hypothetical protein
240	 40.59	0	256584..258002	+	472	71902907	-	M28_Spy0241	-	ABC transporter-associated protein
241	 37.14	0	258154..259335	-	393	71902908	-	M28_Spy0242	-	D-alanyl-D-alanine carboxypeptidase
242	 35.60	0	259503..260735	-	410	71902909	dacA2	M28_Spy0243	-	D-alanyl-D-alanine carboxypeptidase
243	 40.20	0	261057..263036	+	659	71902910	oppA	M28_Spy0244	-	oligopeptide-binding protein
244	 37.03	0	263089..264603	+	504	71902911	oppB	M28_Spy0245	-	oligopeptide transport system permease protein
245	 37.22	0	264603..265529	+	308	71902912	oppC	M28_Spy0246	-	oligopeptide transport system permease protein
246	 40.15	0	265538..266608	+	356	71902913	oppD	M28_Spy0247	-	oligopeptide transport ATP-binding protein
247	 37.45	0	266601..267524	+	307	71902914	oppF	M28_Spy0248	-	oligopeptide transport ATP-binding protein
248	 37.41	0	267765..267911	-	48	71902915	-	M28_Spy0249	-	transposase
249	 36.30	0	268286..268420	-	44	71902916	-	M28_Spy0250	-	hypothetical protein
250	 36.94	0	273812..274393	+	193	71902917	comX	M28_Spy0251	-	competence-specific sigma factor ComX
251	 37.09	0	274895..275479	+	194	71902918	-	M28_Spy0252	-	putative lipase
252	 37.71	0	275479..276597	+	372	71902919	-	M28_Spy0253	-	GTP-binding protein YqeH
253	 32.49	-1	276575..276931	+	118	71902920	-	M28_Spy0254	-	RNA-binding protein
254	 39.65	0	277000..277632	+	210	71902921	nadD	M28_Spy0255	-	nicotinic acid mononucleotide adenylyltransferase
255	 40.57	0	277629..278222	+	197	71902922	-	M28_Spy0256	-	HAD family hydrolase
256	 38.06	0	278198..278599	+	133	71902923	-	M28_Spy0257	-	iojap superfamily protein
257	 38.38	0	278599..279390	+	263	71902924	-	M28_Spy0258	-	methyltransferase
258	 35.95	0	279644..280750	+	368	71902925	-	M28_Spy0259	-	hypothetical protein
259	 26.28	-2	281088..281243	+	51	71902926	-	M28_Spy0260	-	hypothetical protein
260	 38.63	0	281233..281949	+	238	71902927	-	M28_Spy0261	-	hypothetical protein
261	 38.55	0	282152..282994	+	280	71902928	-	M28_Spy0262	-	ABC transporter substrate-binding protein
262	 36.52	0	283321..284166	+	281	71902929	-	M28_Spy0263	-	ABC transporter substrate-binding protein
263	 39.25	0	284416..285480	+	354	71902930	-	M28_Spy0264	-	ABC transporter ATP-binding protein
264	 36.94	0	285481..286173	+	230	71902931	-	M28_Spy0265	-	ABC transporter permease protein
265	 36.98	0	286227..287597	-	456	71902932	braB	M28_Spy0266	-	branched-chain amino acid transport system carrier protein
266	 37.78	0	287831..289045	+	404	71902933	-	M28_Spy0267	-	serine/threonine transporter SstT
267	 37.78	0	289100..289774	-	224	71902934	-	M28_Spy0268	-	potassium uptake protein KtrA
268	 38.22	0	289784..291175	-	463	71902935	-	M28_Spy0269	-	potassium uptake protein KtrB
269	 38.10	0	291245..291958	-	237	71902936	gidB	M28_Spy0270	-	glucose-inhibited division protein B
270	 36.20	0	292108..292665	+	185	71902937	lemA	M28_Spy0271	-	hypothetical protein
271	 40.47	0	292712..293608	+	298	71902938	-	M28_Spy0272	-	heat shock protein HtpX
272	 37.24	0	293839..294375	+	178	71902939	-	M28_Spy0273	-	putative cytoplasmic protein
273	 38.57	0	294642..295328	+	228	71902940	covR	M28_Spy0274	-	response regulator
274	 35.46	0	295334..296836	+	500	71902941	covS	M28_Spy0275	-	CsrS
275	 38.79	0	297051..297545	+	164	71902942	-	M28_Spy0276	-	transcriptional regulator NrdR
276	 37.16	0	297529..298704	+	391	71902943	dnaB	M28_Spy0277	-	replicative DNA helicase
277	 41.31	0	298705..299607	+	300	71902944	dnaI	M28_Spy0278	-	primosomal protein DnaI
278	 43.02	+1	299670..300980	+	436	71902945	engA	M28_Spy0279	-	GTP-binding protein EngA
279	 36.33	0	301187..304285	+	1032	71902946	snf	M28_Spy0280	-	phage-related DNA helicase
280	 36.32	0	304528..305130	+	200	71902947	-	M28_Spy0281	-	putative cytoplasmic protein
281	 37.40	0	305170..306498	+	442	71902948	murC	M28_Spy0282	-	UDP-N-acetylmuramate--L-alanine ligase
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.