IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1795	 37.54	0	1813927..1814259	+	110	71904462	-	M28_Spy1800	-	phage protein
1796	 40.51	0	1814256..1814450	+	64	71904463	-	M28_Spy1801	-	phage protein
1797	 40.30	0	1814462..1814791	+	109	71904464	-	M28_Spy1802	-	phage protein
1798	 38.46	0	1814794..1815066	+	90	71904465	-	M28_Spy1803	-	phage protein
1799	 42.33	+1	1815067..1815933	+	288	71904466	-	M28_Spy1804	-	phage protein
1800	 37.78	0	1815945..1817339	+	464	71904467	-	M28_Spy1805	-	phage protein
1801	 38.82	0	1817633..1817887	+	84	71904468	-	M28_Spy1806	-	phage protein
1802	 34.48	0	1817884..1818057	+	57	71904469	-	M28_Spy1807	-	phage protein
1803	 38.51	0	1818063..1818236	+	57	71904470	-	M28_Spy1808	-	phage protein
1804	 39.61	0	1818238..1818747	+	169	71904471	-	M28_Spy1809	-	phage protein
1805	 39.88	0	1818821..1819309	+	162	71904472	-	M28_Spy1810	-	phage protein
1806	 36.91	0	1819713..1820075	+	120	71904473	-	M28_Spy1811	-	phage protein
1807	 37.76	0	1820050..1820433	+	127	71904474	-	M28_Spy1812	-	phage protein
1808	 36.85	0	1820598..1821251	+	217	71904475	-	M28_Spy1813	-	phage protein
1809	 40.30	0	1821648..1824203	-	851	71904476	mutS	M28_Spy1814	-	DNA mismatch repair protein
1810	 36.23	0	1824190..1824396	-	68	71904477	-	M28_Spy1815	-	putative cytoplasmic protein
1811	 39.95	0	1824539..1824976	-	145	71904478	argR2	M28_Spy1816	-	arginine repressor
1812	 40.78	0	1825267..1826958	+	563	71904479	argS	M28_Spy1817	-	arginyl-tRNA synthetase
1813	 37.00	0	1827028..1827354	+	108	71904480	uviB	M28_Spy1818	-	bacteriocin
1814	 39.40	0	1827381..1828253	-	290	71904481	-	M28_Spy1819	-	hypothetical protein
1815	 38.47	0	1828296..1829249	-	317	71904482	-	M28_Spy1820	-	hypothetical protein
1816	 39.60	0	1829194..1830135	-	313	71904483	-	M28_Spy1821	-	hypothetical protein
1817	 41.94	0	1830128..1831927	-	599	71904484	aspS	M28_Spy1822	-	aspartyl-tRNA synthetase
1818	 41.45	0	1832214..1833494	-	426	162139387	hisS	M28_Spy1823	-	histidyl-tRNA synthetase
1819	 41.53	0	1833714..1833896	+	60	71904486	rpmF	M28_Spy1824	-	50S ribosomal protein L32
1820	 34.00	-1	1833912..1834061	+	49	71904487	rpmG	M28_Spy1825	-	50S ribosomal protein L33
1821	 34.61	0	1834342..1834968	+	208	71904488	cadD	M28_Spy1826	-	cadmium resistance protein
1822	 33.06	-1	1834950..1835318	+	122	71904489	cadC	M28_Spy1827	-	cadmium efflux system accessory protein
1823	 30.58	-1	1835348..1836292	+	314	71904490	-	M28_Spy1828	-	hypothetical protein
1824	 39.18	0	1836358..1837110	+	250	71904491	-	M28_Spy1829	-	FtsK/SpoIIIE family protein
1825	 37.98	0	1837107..1837709	+	200	71904492	-	M28_Spy1830	-	hypothetical protein
1826	 34.74	0	1838185..1838469	-	94	71904493	-	M28_Spy1831	-	transcriptional regulator
1827	 37.60	0	1838920..1839762	+	280	71904494	-	M28_Spy1832	-	integral membrane protein
1828	 39.10	0	1839809..1840450	-	213	71904495	-	M28_Spy1833	-	phosphohydrolase
1829	 37.82	0	1840362..1840517	-	51	71904496	-	M28_Spy1834	-	hypothetical protein
1830	 36.70	0	1840657..1840983	+	108	71904497	-	M28_Spy1835	-	PadR family transcriptional regulator
1831	 43.37	+1	1840970..1841557	+	195	71904498	-	M28_Spy1836	-	hypothetical protein
1832	 38.36	0	1841554..1842627	+	357	71904499	-	M28_Spy1837	-	hypothetical protein
1833	 40.54	0	1842744..1845047	-	767	71904500	-	M28_Spy1838	-	phage protein
1834	 32.77	-1	1845152..1845685	+	177	71904501	-	M28_Spy1839	-	TetR family transcriptional regulator
1835	 38.95	0	1846059..1846343	-	94	71904502	-	M28_Spy1840	-	RelE-domain-containing protein
1836	 34.07	-1	1846318..1846590	-	90	71904503	-	M28_Spy1841	-	hypothetical protein
1837	 34.68	0	1846698..1847069	-	123	71904504	-	M28_Spy1842	-	phage protein
1838	 35.63	0	1847059..1847406	-	115	71904505	-	M28_Spy1843	-	phage protein
1839	 32.52	-1	1847687..1847932	-	81	71904506	-	M28_Spy1844	-	phage protein
1840	 32.62	-1	1847907..1848188	-	93	71904507	-	M28_Spy1845	-	phage protein
1841	 39.84	0	1848172..1848555	-	127	71904508	-	M28_Spy1846	-	phage protein
1842	 38.58	0	1848552..1848818	-	88	71904509	-	M28_Spy1847	-	phage protein
1843	 35.87	0	1848815..1849603	-	262	71904510	-	M28_Spy1848	-	phage protein
1844	 33.96	-1	1849694..1849852	-	52	71904511	-	M28_Spy1849	-	phage protein
1845	 40.65	0	1849866..1850111	-	81	71904512	-	M28_Spy1850	-	phage protein
1846	 39.94	0	1850086..1850433	-	115	71904513	-	M28_Spy1851	-	phage protein
1847	 40.80	0	1850435..1850608	-	57	71904514	-	M28_Spy1852	-	phage protein
1848	 30.46	-1	1850614..1850787	-	57	71904515	-	M28_Spy1853	-	phage protein
1849	 36.93	0	1851074..1852687	-	537	71904516	-	M28_Spy1854	-	phage protein
1850	 35.25	0	1852677..1853198	-	173	71904517	-	M28_Spy1855	-	phage protein
1851	 37.67	0	1853208..1853576	-	122	71904518	-	M28_Spy1856	-	phage protein
1852	 37.44	0	1853485..1853679	-	64	71904519	-	M28_Spy1857	-	phage protein
1853	 36.64	0	1853676..1854008	-	110	71904520	-	M28_Spy1858	-	phage protein
1854	 37.70	0	1854020..1854202	-	60	71904521	-	M28_Spy1859	-	phage protein
1855	 39.36	0	1854423..1854671	-	82	71904522	-	M28_Spy1860	-	phage protein
1856	 38.45	0	1854722..1855288	-	188	71904523	-	M28_Spy1861	-	phage protein
1857	 37.57	0	1855304..1855492	-	62	71904524	-	M28_Spy1862	-	phage protein
1858	 33.56	-1	1855661..1856104	+	147	71904525	-	M28_Spy1863	-	phage protein
1859	 37.97	0	1856284..1857447	+	387	71904526	-	M28_Spy1864	-	DNA integration/recombination/invertion protein
1860	 41.18	0	1857604..1858215	-	203	71904527	rpsD	M28_Spy1865	-	30S ribosomal protein S4
1861	 32.67	-1	1858945..1859247	-	100	71904528	-	M28_Spy1866	-	hypothetical protein
1862	 39.07	0	1859234..1860610	-	458	71904529	holB	M28_Spy1867	-	replicative DNA helicase
1863	 34.44	0	1860631..1861083	-	150	71904530	rplI	M28_Spy1868	-	50S ribosomal protein L9
1864	 34.46	0	1861080..1863116	-	678	71904531	-	M28_Spy1869	-	phosphoesterase, DHH family protein
1865	 39.81	0	1863146..1865044	-	632	71904532	gidA	M28_Spy1870	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1866	 35.22	0	1865168..1865485	-	105	71904533	-	M28_Spy1871	-	phosphohydrolase
1867	 41.05	0	1866261..1867400	-	379	71904534	trmU	M28_Spy1872	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1868	 35.99	0	1867693..1868370	+	225	71904535	sdhB	M28_Spy1873	-	L-serine dehydratase
1869	 41.24	0	1868382..1869254	+	290	71904536	sdhA	M28_Spy1874	-	L-serine dehydratase
1870	 40.16	0	1869668..1870282	-	204	71904537	-	M28_Spy1875	-	transglycosylase SLT domain-containing protein
1871	 34.08	-1	1870654..1871454	-	266	71904538	cbiQ	M28_Spy1876	-	cobalt transport protein
1872	 36.54	0	1871447..1872289	-	280	71904539	cbiO2	M28_Spy1877	-	cobalt transporter ATP-binding subunit
1873	 35.24	0	1872265..1873155	-	296	71904540	cbiO1	M28_Spy1878	-	cobalt transporter ATP-binding subunit
1874	 36.65	0	1873106..1873648	-	180	71904541	-	M28_Spy1879	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1875	 34.80	0	1873662..1874687	-	341	71904542	-	M28_Spy1880	-	hypothetical protein
1876	 32.09	-1	1874737..1876026	-	429	71904543	-	M28_Spy1881	-	metalloprotease
1877	 30.60	-1	1876028..1877272	-	414	71904544	-	M28_Spy1882	-	metalloprotease
1878	 26.03	-2	1877712..1877930	+	72	71904545	-	M28_Spy1883	-	hyaluronan synthase
1879	 34.13	-1	1877971..1878972	+	333	71904546	hasA	M28_Spy1884	-	hyaluronan synthase
1880	 31.18	-1	1879008..1880216	+	402	71904547	hasB	M28_Spy1885	-	UDP-glucose 6-dehydrogenase
1881	 42.19	0	1880398..1881312	+	304	71904548	hasC	M28_Spy1886	-	UTP-glucose-1-phosphate uridylyltransferase
1882	 36.53	0	1881596..1882033	+	145	71904549	-	M28_Spy1887	-	putative cytoplasmic protein
1883	 37.31	0	1882035..1883141	+	368	71904550	recF	M28_Spy1888	-	recombination protein F
1884	 36.11	0	1883198..1884061	-	287	71904551	-	M28_Spy1889	-	glucose uptake protein
1885	 41.84	0	1884264..1885745	-	493	71904552	guaB	M28_Spy1890	-	inositol-5-monophosphate dehydrogenase
1886	 36.17	0	1886053..1887075	-	340	162139386	trsA	M28_Spy1891	-	tryptophanyl-tRNA synthetase II
1887	 37.30	0	1887167..1887292	-	41	71904554	-	M28_Spy1892	-	hypothetical protein
1888	 35.28	0	1887494..1888366	+	290	71904555	-	M28_Spy1893	-	hypothetical protein
1889	 37.78	0	1888445..1890064	+	539	71904556	-	M28_Spy1894	-	ABC transporter ATP-binding protein
1890	 31.32	-1	1890147..1892723	+	858	71904557	-	M28_Spy1895	-	ABC transporter, permease protein
1891	 41.16	0	1893593..1894180	-	195	71904558	-	M28_Spy1896	-	transposase
1892	 31.67	-1	1894763..1895242	-	159	71904559	-	M28_Spy1897	-	SPOUT methyltransferase superfamily protein
1893	 34.56	0	1895454..1896677	+	407	71904560	htrA	M28_Spy1898	-	protease Do
1894	 35.44	0	1896736..1897542	+	268	71904561	parB	M28_Spy1899	-	chromosome partitioning protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.