IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1750	 44.71	+1	1766629..1768659	+	676	71904417	hutU	M28_Spy1755	-	urocanate hydratase
1751	 44.11	+1	1768747..1769646	+	299	71904418	-	M28_Spy1756	-	glutamate formiminotransferase
1752	 43.70	+1	1769657..1770283	+	208	71904419	-	M28_Spy1757	-	formiminotetrahydrofolate cyclodeaminase
1753	 47.37	+2	1770301..1771974	+	557	71904420	fhs.2	M28_Spy1758	-	formate--tetrahydrofolate ligase
1754	 44.66	+1	1771975..1772592	+	205	71904421	-	M28_Spy1759	-	putative cytoplasmic protein
1755	 43.68	+1	1772812..1774155	+	447	71904422	-	M28_Spy1760	-	amino acid permease
1756	 45.40	+1	1774166..1775707	+	513	162139389	hutH	M28_Spy1761	-	histidine ammonia-lyase
1757	 45.38	+1	1775884..1776879	+	331	71904424	hutG	M28_Spy1762	-	formimidoylglutamase
1758	 41.24	0	1776910..1779984	-	1024	71904425	-	M28_Spy1763	-	LuxR family transcriptional regulator
1759	 43.23	+1	1780288..1781055	+	255	71904426	rpsB	M28_Spy1764	-	30S ribosomal protein S2
1760	 41.98	0	1781189..1782229	+	346	162139388	tsf	M28_Spy1765	-	elongation factor Ts
1761	 41.67	0	1782395..1784290	-	631	71904428	pepO	M28_Spy1766	-	neutral endopeptidase
1762	 42.36	+1	1784498..1786126	-	542	71904429	dexS	M28_Spy1767	-	trehalose-6-phosphate hydrolase
1763	 41.78	0	1786194..1788218	-	674	71904430	-	M28_Spy1768	-	PTS system, trehalose-specific IIBC component
1764	 38.94	0	1788429..1789142	+	237	71904431	-	M28_Spy1769	-	trehalose operon transcriptional repressor
1765	 45.42	+1	1789421..1789660	-	79	71904432	-	M28_Spy1770	-	MarR family transcriptional regulator
1766	 42.77	+1	1789945..1790802	+	285	71904433	-	M28_Spy1771	-	glyoxalase family protein
1767	 43.03	+1	1790844..1791575	+	243	71904434	yaaA	M28_Spy1772	-	hypothetical protein
1768	 40.45	0	1791749..1792366	-	205	71904435	nrdG	M28_Spy1773	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1769	 41.57	0	1792363..1792872	-	169	71904436	-	M28_Spy1774	-	acetyltransferase
1770	 40.98	0	1792881..1793822	-	313	71904437	-	M28_Spy1775	-	putative oxidoreductase
1771	 34.69	0	1793845..1793991	-	48	71904438	-	M28_Spy1776	-	hypothetical protein
1772	 38.02	0	1794173..1796371	-	732	71904439	nrdD	M28_Spy1777	-	anaerobic ribonucleoside triphosphate reductase
1773	 33.65	-1	1796468..1798027	-	519	71904440	-	M28_Spy1778	-	hypothetical protein
1774	 35.95	0	1798441..1798746	-	101	71904441	-	M28_Spy1779	-	hypothetical protein
1775	 37.86	0	1798758..1799177	-	139	71904442	-	M28_Spy1780	-	Holliday junction resolvase-like protein
1776	 35.19	0	1799174..1799443	-	89	71904443	-	M28_Spy1781	-	hypothetical protein
1777	 35.84	0	1799557..1799955	-	132	71904444	spxA	M28_Spy1782	-	transcriptional regulator Spx
1778	 40.55	0	1800246..1801382	-	378	71904445	recA	M28_Spy1783	-	recombinase A
1779	 41.59	0	1801471..1802742	-	423	71904446	cinA	M28_Spy1784	-	competence damage-inducible protein A
1780	 39.12	0	1802811..1803380	-	189	71904447	tag	M28_Spy1785	-	DNA-3-methyladenine glycosylase
1781	 39.87	0	1803381..1803977	-	198	71904448	ruvA	M28_Spy1786	-	Holliday junction DNA helicase motor protein
1782	 38.00	0	1803979..1805199	-	406	71904449	lmrP	M28_Spy1787	-	multidrug resistance protein B
1783	 39.17	0	1805210..1807231	-	673	71904450	mutL	M28_Spy1788	-	DNA mismatch repair protein
1784	 35.74	0	1807287..1808450	-	387	71904451	-	M28_Spy1789	-	DNA integration/recombination/invertion protein
1785	 37.50	0	1808687..1808830	+	47	71904452	-	M28_Spy1790	-	hypothetical protein
1786	 36.33	0	1809692..1810459	-	255	71904453	-	M28_Spy1791	-	phage transcriptional repressor
1787	 34.78	0	1810613..1810819	+	68	71904454	-	M28_Spy1792	-	Cro/CI family phage transcriptional regulator
1788	 38.81	0	1810853..1811053	+	66	71904455	-	M28_Spy1793	-	phage transcriptional repressor
1789	 39.46	0	1811074..1811481	+	135	71904456	-	M28_Spy1794	-	phage protein
1790	 34.96	0	1811494..1811616	+	40	71904457	-	M28_Spy1795	-	phage protein
1791	 38.07	0	1811893..1812420	+	175	71904458	-	M28_Spy1796	-	phage protein
1792	 34.87	0	1812647..1812841	+	64	71904459	-	M28_Spy1797	-	phage protein
1793	 37.50	0	1813041..1813232	+	63	71904460	-	M28_Spy1798	-	phage protein
1794	 34.39	0	1813256..1813825	+	189	71904461	-	M28_Spy1799	-	phage protein
1795	 37.54	0	1813927..1814259	+	110	71904462	-	M28_Spy1800	-	phage protein
1796	 40.51	0	1814256..1814450	+	64	71904463	-	M28_Spy1801	-	phage protein
1797	 40.30	0	1814462..1814791	+	109	71904464	-	M28_Spy1802	-	phage protein
1798	 38.46	0	1814794..1815066	+	90	71904465	-	M28_Spy1803	-	phage protein
1799	 42.33	+1	1815067..1815933	+	288	71904466	-	M28_Spy1804	-	phage protein
1800	 37.78	0	1815945..1817339	+	464	71904467	-	M28_Spy1805	-	phage protein
1801	 38.82	0	1817633..1817887	+	84	71904468	-	M28_Spy1806	-	phage protein
1802	 34.48	0	1817884..1818057	+	57	71904469	-	M28_Spy1807	-	phage protein
1803	 38.51	0	1818063..1818236	+	57	71904470	-	M28_Spy1808	-	phage protein
1804	 39.61	0	1818238..1818747	+	169	71904471	-	M28_Spy1809	-	phage protein
1805	 39.88	0	1818821..1819309	+	162	71904472	-	M28_Spy1810	-	phage protein
1806	 36.91	0	1819713..1820075	+	120	71904473	-	M28_Spy1811	-	phage protein
1807	 37.76	0	1820050..1820433	+	127	71904474	-	M28_Spy1812	-	phage protein
1808	 36.85	0	1820598..1821251	+	217	71904475	-	M28_Spy1813	-	phage protein
1809	 40.30	0	1821648..1824203	-	851	71904476	mutS	M28_Spy1814	-	DNA mismatch repair protein
1810	 36.23	0	1824190..1824396	-	68	71904477	-	M28_Spy1815	-	putative cytoplasmic protein
1811	 39.95	0	1824539..1824976	-	145	71904478	argR2	M28_Spy1816	-	arginine repressor
1812	 40.78	0	1825267..1826958	+	563	71904479	argS	M28_Spy1817	-	arginyl-tRNA synthetase
1813	 37.00	0	1827028..1827354	+	108	71904480	uviB	M28_Spy1818	-	bacteriocin
1814	 39.40	0	1827381..1828253	-	290	71904481	-	M28_Spy1819	-	hypothetical protein
1815	 38.47	0	1828296..1829249	-	317	71904482	-	M28_Spy1820	-	hypothetical protein
1816	 39.60	0	1829194..1830135	-	313	71904483	-	M28_Spy1821	-	hypothetical protein
1817	 41.94	0	1830128..1831927	-	599	71904484	aspS	M28_Spy1822	-	aspartyl-tRNA synthetase
1818	 41.45	0	1832214..1833494	-	426	162139387	hisS	M28_Spy1823	-	histidyl-tRNA synthetase
1819	 41.53	0	1833714..1833896	+	60	71904486	rpmF	M28_Spy1824	-	50S ribosomal protein L32
1820	 34.00	-1	1833912..1834061	+	49	71904487	rpmG	M28_Spy1825	-	50S ribosomal protein L33
1821	 34.61	0	1834342..1834968	+	208	71904488	cadD	M28_Spy1826	-	cadmium resistance protein
1822	 33.06	-1	1834950..1835318	+	122	71904489	cadC	M28_Spy1827	-	cadmium efflux system accessory protein
1823	 30.58	-1	1835348..1836292	+	314	71904490	-	M28_Spy1828	-	hypothetical protein
1824	 39.18	0	1836358..1837110	+	250	71904491	-	M28_Spy1829	-	FtsK/SpoIIIE family protein
1825	 37.98	0	1837107..1837709	+	200	71904492	-	M28_Spy1830	-	hypothetical protein
1826	 34.74	0	1838185..1838469	-	94	71904493	-	M28_Spy1831	-	transcriptional regulator
1827	 37.60	0	1838920..1839762	+	280	71904494	-	M28_Spy1832	-	integral membrane protein
1828	 39.10	0	1839809..1840450	-	213	71904495	-	M28_Spy1833	-	phosphohydrolase
1829	 37.82	0	1840362..1840517	-	51	71904496	-	M28_Spy1834	-	hypothetical protein
1830	 36.70	0	1840657..1840983	+	108	71904497	-	M28_Spy1835	-	PadR family transcriptional regulator
1831	 43.37	+1	1840970..1841557	+	195	71904498	-	M28_Spy1836	-	hypothetical protein
1832	 38.36	0	1841554..1842627	+	357	71904499	-	M28_Spy1837	-	hypothetical protein
1833	 40.54	0	1842744..1845047	-	767	71904500	-	M28_Spy1838	-	phage protein
1834	 32.77	-1	1845152..1845685	+	177	71904501	-	M28_Spy1839	-	TetR family transcriptional regulator
1835	 38.95	0	1846059..1846343	-	94	71904502	-	M28_Spy1840	-	RelE-domain-containing protein
1836	 34.07	-1	1846318..1846590	-	90	71904503	-	M28_Spy1841	-	hypothetical protein
1837	 34.68	0	1846698..1847069	-	123	71904504	-	M28_Spy1842	-	phage protein
1838	 35.63	0	1847059..1847406	-	115	71904505	-	M28_Spy1843	-	phage protein
1839	 32.52	-1	1847687..1847932	-	81	71904506	-	M28_Spy1844	-	phage protein
1840	 32.62	-1	1847907..1848188	-	93	71904507	-	M28_Spy1845	-	phage protein
1841	 39.84	0	1848172..1848555	-	127	71904508	-	M28_Spy1846	-	phage protein
1842	 38.58	0	1848552..1848818	-	88	71904509	-	M28_Spy1847	-	phage protein
1843	 35.87	0	1848815..1849603	-	262	71904510	-	M28_Spy1848	-	phage protein
1844	 33.96	-1	1849694..1849852	-	52	71904511	-	M28_Spy1849	-	phage protein
1845	 40.65	0	1849866..1850111	-	81	71904512	-	M28_Spy1850	-	phage protein
1846	 39.94	0	1850086..1850433	-	115	71904513	-	M28_Spy1851	-	phage protein
1847	 40.80	0	1850435..1850608	-	57	71904514	-	M28_Spy1852	-	phage protein
1848	 30.46	-1	1850614..1850787	-	57	71904515	-	M28_Spy1853	-	phage protein
1849	 36.93	0	1851074..1852687	-	537	71904516	-	M28_Spy1854	-	phage protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.