IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1699	 36.80	0	1713653..1715269	-	538	71904366	mga	M28_Spy1704	-	M protein trans-acting positive regulator (Mga)
1700	 32.31	-1	1715636..1715830	+	64	71904367	-	M28_Spy1705	-	hypothetical protein
1701	 39.29	0	1715936..1716187	-	83	71904368	-	M28_Spy1706	-	hypothetical protein
1702	 44.34	+1	1716265..1717890	-	541	71904369	isp	M28_Spy1707	-	immunogenic secreted protein
1703	 38.23	0	1717992..1719380	-	462	71904370	ihk	M28_Spy1708	-	two component system histidine kinase
1704	 37.77	0	1719377..1720030	-	217	71904371	irr	M28_Spy1709	-	two-component response regulator
1705	 38.34	0	1720124..1721341	-	405	71904372	-	M28_Spy1710	-	ABC transporter permease protein
1706	 39.85	0	1721354..1722028	-	224	71904373	-	M28_Spy1711	-	ABC transporter ATP-binding protein
1707	 39.80	0	1722015..1723283	-	422	71904374	-	M28_Spy1712	-	periplasmic component of efflux system
1708	 36.49	0	1723717..1724001	-	94	71904375	-	M28_Spy1713	-	hypothetical protein
1709	 41.75	0	1724150..1724446	-	98	71904376	-	M28_Spy1714	-	hypothetical protein
1710	 45.59	+1	1724588..1726537	-	649	71904377	sfbX	M28_Spy1715	-	fibronectin-binding protein
1711	 40.02	0	1726717..1729797	-	1026	71904378	sof	M28_Spy1716	-	serum opacity factor
1712	 49.79	+2	1730221..1730457	+	78	71904379	-	M28_Spy1717	-	putative cytoplasmic protein
1713	 42.06	0	1730733..1731683	-	316	71904380	prsA	M28_Spy1718	-	foldase protein PrsA
1714	 41.82	0	1731715..1732032	-	105	71904381	-	M28_Spy1719	-	hypothetical protein
1715	 42.81	+1	1732140..1732445	-	101	71904382	-	M28_Spy1720	-	streptopain fragment
1716	 39.35	0	1732447..1733643	-	398	71904383	speB	M28_Spy1721	-	streptococcal pyrogenic exotoxin B
1717	 40.35	0	1733915..1734085	-	56	71904384	-	M28_Spy1722	-	hypothetical protein
1718	 25.76	-2	1734169..1734300	+	43	71904385	-	M28_Spy1723	-	hypothetical protein
1719	 31.55	-1	1734584..1735426	+	280	71904386	rgg	M28_Spy1724	-	transcriptional regulator
1720	 40.54	0	1735667..1736512	-	281	71904387	mf	M28_Spy1725	-	mitogenic factor
1721	 34.88	0	1736566..1736694	+	42	71904388	-	M28_Spy1726	-	hypothetical protein
1722	 43.33	+1	1736846..1737355	+	169	71904389	-	M28_Spy1727	-	low temperature requirement C protein
1723	 44.81	+1	1737437..1738525	-	362	71904390	gldA	M28_Spy1728	-	glycerol dehydrogenase
1724	 42.45	+1	1738582..1739250	-	222	71904391	mipB	M28_Spy1729	-	fructose-6-phosphate aldolase
1725	 44.46	+1	1739263..1741680	-	805	71904392	pflD	M28_Spy1730	-	formate acetyltransferase
1726	 42.15	0	1741891..1743195	-	434	71904393	-	M28_Spy1731	-	PTS system, cellobiose-specific IIC component
1727	 39.70	0	1743205..1743534	-	109	71904394	-	M28_Spy1732	-	PTS system, cellobiose-specific IIB component
1728	 37.69	0	1743541..1743861	-	106	71904395	-	M28_Spy1733	-	PTS system, cellobiose-specific IIA component
1729	 41.49	0	1744149..1745129	-	326	71904396	-	M28_Spy1734	-	sorbitol operon regulator
1730	 40.93	0	1745145..1745894	-	249	71904397	-	M28_Spy1735	-	DeoR family transcriptional regulator
1731	 40.79	0	1745960..1746790	+	276	71904398	-	M28_Spy1736	-	pyruvate formate-lyase activating enzyme
1732	 35.03	0	1747027..1747203	-	58	71904399	secE	M28_Spy1737	-	preprotein translocase subunit SecE
1733	 39.87	0	1747217..1747369	-	50	71904400	rpmG	M28_Spy1738	-	50S ribosomal protein L33
1734	 39.92	0	1747418..1749754	-	778	71904401	pbp2A	M28_Spy1739	-	multimodular transpeptidase-transglycosylase
1735	 40.16	0	1749793..1750173	-	126	71904402	-	M28_Spy1740	-	translation initiation inhibitor
1736	 40.10	0	1750665..1750856	+	63	71904403	-	M28_Spy1741	-	putative cytoplasmic protein
1737	 40.02	0	1750750..1751751	+	333	71904404	-	M28_Spy1742	-	ribosomal large subunit pseudouridine synthase D
1738	 38.43	0	1751840..1753564	-	574	71904405	-	M28_Spy1743	-	hypothetical protein
1739	 39.64	0	1753688..1755226	+	512	71904406	-	M28_Spy1744	-	dipeptidase B
1740	 41.82	0	1755712..1755876	-	54	71904407	-	M28_Spy1745	-	MutR family transcriptional regulator
1741	 36.30	0	1755949..1756218	-	89	71904408	-	M28_Spy1746	-	MutR family transcriptional regulator
1742	 43.26	+1	1756466..1758097	-	543	162139391	groEL	M28_Spy1747	-	chaperonin GroEL
1743	 41.58	0	1758133..1758423	-	96	162139390	groES	M28_Spy1748	-	co-chaperonin GroES
1744	 39.84	0	1758601..1761045	-	814	71904411	clpC	M28_Spy1749	-	negative regulator of genetic competence
1745	 39.61	0	1761045..1761506	-	153	71904412	ctsR	M28_Spy1750	-	transcriptional regulator
1746	 37.14	0	1761702..1761911	-	69	71904413	csp	M28_Spy1751	-	cold shock protein
1747	 39.75	0	1762901..1763461	+	186	71904414	ahpC	M28_Spy1752	-	peroxiredoxin reductase (NAD(P)H)
1748	 43.51	+1	1763482..1765014	+	510	71904415	ahpF	M28_Spy1753	-	peroxiredoxin reductase (NAD(P)H)
1749	 41.65	0	1765072..1766358	-	428	71904416	hutI	M28_Spy1754	-	imidazolonepropionase
1750	 44.71	+1	1766629..1768659	+	676	71904417	hutU	M28_Spy1755	-	urocanate hydratase
1751	 44.11	+1	1768747..1769646	+	299	71904418	-	M28_Spy1756	-	glutamate formiminotransferase
1752	 43.70	+1	1769657..1770283	+	208	71904419	-	M28_Spy1757	-	formiminotetrahydrofolate cyclodeaminase
1753	 47.37	+2	1770301..1771974	+	557	71904420	fhs.2	M28_Spy1758	-	formate--tetrahydrofolate ligase
1754	 44.66	+1	1771975..1772592	+	205	71904421	-	M28_Spy1759	-	putative cytoplasmic protein
1755	 43.68	+1	1772812..1774155	+	447	71904422	-	M28_Spy1760	-	amino acid permease
1756	 45.40	+1	1774166..1775707	+	513	162139389	hutH	M28_Spy1761	-	histidine ammonia-lyase
1757	 45.38	+1	1775884..1776879	+	331	71904424	hutG	M28_Spy1762	-	formimidoylglutamase
1758	 41.24	0	1776910..1779984	-	1024	71904425	-	M28_Spy1763	-	LuxR family transcriptional regulator
1759	 43.23	+1	1780288..1781055	+	255	71904426	rpsB	M28_Spy1764	-	30S ribosomal protein S2
1760	 41.98	0	1781189..1782229	+	346	162139388	tsf	M28_Spy1765	-	elongation factor Ts
1761	 41.67	0	1782395..1784290	-	631	71904428	pepO	M28_Spy1766	-	neutral endopeptidase
1762	 42.36	+1	1784498..1786126	-	542	71904429	dexS	M28_Spy1767	-	trehalose-6-phosphate hydrolase
1763	 41.78	0	1786194..1788218	-	674	71904430	-	M28_Spy1768	-	PTS system, trehalose-specific IIBC component
1764	 38.94	0	1788429..1789142	+	237	71904431	-	M28_Spy1769	-	trehalose operon transcriptional repressor
1765	 45.42	+1	1789421..1789660	-	79	71904432	-	M28_Spy1770	-	MarR family transcriptional regulator
1766	 42.77	+1	1789945..1790802	+	285	71904433	-	M28_Spy1771	-	glyoxalase family protein
1767	 43.03	+1	1790844..1791575	+	243	71904434	yaaA	M28_Spy1772	-	hypothetical protein
1768	 40.45	0	1791749..1792366	-	205	71904435	nrdG	M28_Spy1773	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1769	 41.57	0	1792363..1792872	-	169	71904436	-	M28_Spy1774	-	acetyltransferase
1770	 40.98	0	1792881..1793822	-	313	71904437	-	M28_Spy1775	-	putative oxidoreductase
1771	 34.69	0	1793845..1793991	-	48	71904438	-	M28_Spy1776	-	hypothetical protein
1772	 38.02	0	1794173..1796371	-	732	71904439	nrdD	M28_Spy1777	-	anaerobic ribonucleoside triphosphate reductase
1773	 33.65	-1	1796468..1798027	-	519	71904440	-	M28_Spy1778	-	hypothetical protein
1774	 35.95	0	1798441..1798746	-	101	71904441	-	M28_Spy1779	-	hypothetical protein
1775	 37.86	0	1798758..1799177	-	139	71904442	-	M28_Spy1780	-	Holliday junction resolvase-like protein
1776	 35.19	0	1799174..1799443	-	89	71904443	-	M28_Spy1781	-	hypothetical protein
1777	 35.84	0	1799557..1799955	-	132	71904444	spxA	M28_Spy1782	-	transcriptional regulator Spx
1778	 40.55	0	1800246..1801382	-	378	71904445	recA	M28_Spy1783	-	recombinase A
1779	 41.59	0	1801471..1802742	-	423	71904446	cinA	M28_Spy1784	-	competence damage-inducible protein A
1780	 39.12	0	1802811..1803380	-	189	71904447	tag	M28_Spy1785	-	DNA-3-methyladenine glycosylase
1781	 39.87	0	1803381..1803977	-	198	71904448	ruvA	M28_Spy1786	-	Holliday junction DNA helicase motor protein
1782	 38.00	0	1803979..1805199	-	406	71904449	lmrP	M28_Spy1787	-	multidrug resistance protein B
1783	 39.17	0	1805210..1807231	-	673	71904450	mutL	M28_Spy1788	-	DNA mismatch repair protein
1784	 35.74	0	1807287..1808450	-	387	71904451	-	M28_Spy1789	-	DNA integration/recombination/invertion protein
1785	 37.50	0	1808687..1808830	+	47	71904452	-	M28_Spy1790	-	hypothetical protein
1786	 36.33	0	1809692..1810459	-	255	71904453	-	M28_Spy1791	-	phage transcriptional repressor
1787	 34.78	0	1810613..1810819	+	68	71904454	-	M28_Spy1792	-	Cro/CI family phage transcriptional regulator
1788	 38.81	0	1810853..1811053	+	66	71904455	-	M28_Spy1793	-	phage transcriptional repressor
1789	 39.46	0	1811074..1811481	+	135	71904456	-	M28_Spy1794	-	phage protein
1790	 34.96	0	1811494..1811616	+	40	71904457	-	M28_Spy1795	-	phage protein
1791	 38.07	0	1811893..1812420	+	175	71904458	-	M28_Spy1796	-	phage protein
1792	 34.87	0	1812647..1812841	+	64	71904459	-	M28_Spy1797	-	phage protein
1793	 37.50	0	1813041..1813232	+	63	71904460	-	M28_Spy1798	-	phage protein
1794	 34.39	0	1813256..1813825	+	189	71904461	-	M28_Spy1799	-	phage protein
1795	 37.54	0	1813927..1814259	+	110	71904462	-	M28_Spy1800	-	phage protein
1796	 40.51	0	1814256..1814450	+	64	71904463	-	M28_Spy1801	-	phage protein
1797	 40.30	0	1814462..1814791	+	109	71904464	-	M28_Spy1802	-	phage protein
1798	 38.46	0	1814794..1815066	+	90	71904465	-	M28_Spy1803	-	phage protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.