IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1650	 42.31	+1	1652996..1653151	-	51	71904317	-	M28_Spy1655	-	hypothetical protein
1651	 40.70	0	1653277..1653534	+	85	71904318	-	M28_Spy1656	-	putative transcriptional regulator
1652	 40.33	0	1653660..1654274	+	204	71904319	def	M28_Spy1657	-	peptide deformylase
1653	 42.36	+1	1654307..1654849	-	180	71904320	-	M28_Spy1658	-	oxidoreductase
1654	 39.22	0	1654980..1655438	-	152	71904321	-	M28_Spy1659	-	MarR family transcriptional regulator
1655	 43.84	+1	1655518..1659915	-	1465	71904322	polC	M28_Spy1660	-	DNA polymerase III PolC
1656	 43.62	+1	1660169..1662025	-	618	71904323	proS	M28_Spy1661	-	prolyl-tRNA synthetase
1657	 40.63	0	1662223..1663482	-	419	71904324	-	M28_Spy1662	-	pheromone-processing membrane metalloprotease
1658	 39.37	0	1663555..1664349	-	264	71904325	cdsA	M28_Spy1663	-	phosphatidate cytidylyltransferase
1659	 40.80	0	1664362..1665111	-	249	71904326	uppS	M28_Spy1664	-	undecaprenyl pyrophosphate synthetase
1660	 39.34	0	1665330..1665695	-	121	71904327	yajC	M28_Spy1665	-	preprotein translocase subunit YajC
1661	 42.93	+1	1665811..1666185	-	124	71904328	-	M28_Spy1666	-	thioredoxin
1662	 43.04	+1	1666300..1669824	-	1174	71904330	pulA	M28_Spy1668	-	pullulanase
1663	 39.83	0	1669781..1670011	+	76	71904329	-	M28_Spy1667	-	hypothetical protein
1664	 43.55	+1	1669995..1671629	-	544	71904331	dexB	M28_Spy1669	-	glucan 1,6-alpha-glucosidase
1665	 42.50	+1	1671737..1672870	-	377	71904332	msmK	M28_Spy1670	-	multiple sugar transport ATP-binding protein
1666	 44.56	+1	1673168..1674058	-	296	71904333	lrp	M28_Spy1671	-	leucine rich protein
1667	 40.29	0	1674356..1675678	+	440	71904334	ska	M28_Spy1672	-	streptokinase
1668	 43.24	+1	1675776..1676219	-	147	71904335	-	M28_Spy1673	-	D-tyrosyl-tRNA deacylase
1669	 44.22	+1	1676234..1678465	-	743	71904336	relA	M28_Spy1674	-	GTP pyrophosphokinase
1670	 50.22	+2	1678705..1680072	-	455	71904337	sclA	M28_Spy1675	-	collagen-like surface protein A
1671	 47.00	+2	1680454..1680936	+	160	71904338	-	M28_Spy1676	-	hypothetical protein
1672	 42.62	+1	1681330..1682169	-	279	71904339	-	M28_Spy1677	-	exodeoxyribonuclease III
1673	 44.63	+1	1682231..1684417	-	728	71904340	-	M28_Spy1678	-	PTS system, glucose-specific IIABC component
1674	 44.13	+1	1684774..1685523	-	249	71904341	-	M28_Spy1679	-	putative cytoplasmic protein
1675	 44.34	+1	1685523..1686476	-	317	71904342	prmA	M28_Spy1680	-	ribosomal protein L11 methyltransferase
1676	 39.49	0	1686546..1687016	-	156	71904343	-	M28_Spy1681	-	hypothetical protein
1677	 44.50	+1	1687211..1688974	+	587	71904344	-	M28_Spy1682	-	4-amino-4-deoxychorismate lyase
1678	 45.33	+1	1689007..1689573	+	188	71904345	trpG	M28_Spy1683	-	anthranilate synthase component II
1679	 42.95	+1	1689606..1690874	+	422	71904346	-	M28_Spy1684	-	recombination factor protein RarA
1680	 36.65	0	1691331..1691813	+	160	71904347	-	M28_Spy1685	-	acetyltransferase
1681	 37.48	0	1691868..1692374	+	168	71904348	flaR	M28_Spy1686	-	topology modulation protein
1682	 28.77	-2	1692623..1693324	+	233	71904349	smeZ	M28_Spy1687	-	mitogenic exotoxin Z
1683	 41.44	0	1693650..1693760	-	36	71904350	-	M28_Spy1688	-	putative cytoplasmic protein
1684	 39.63	0	1694048..1695682	+	544	71904351	dppA	M28_Spy1689	-	dipeptide-binding protein
1685	 40.39	0	1695795..1696772	+	325	71904352	dppB	M28_Spy1690	-	dipeptide transport system permease protein
1686	 40.02	0	1696769..1697590	+	273	71904353	dppC	M28_Spy1691	-	dipeptide transport system permease protein
1687	 38.93	0	1697602..1698405	+	267	71904354	dppD	M28_Spy1692	-	dipeptide transport ATP-binding protein
1688	 38.44	0	1698389..1699015	+	208	71904355	dppE	M28_Spy1693	-	dipeptide transport ATP-binding protein
1689	 36.32	0	1699097..1699297	-	66	71904356	-	M28_Spy1694	-	hypothetical protein
1690	 40.56	0	1699466..1701943	-	825	71904357	-	M28_Spy1695	-	streptococcal histidine triad protein
1691	 40.72	0	1701956..1702876	-	306	71904358	lmb	M28_Spy1696	-	laminin binding protein
1692	 39.32	0	1702954..1703070	-	38	71904359	-	M28_Spy1697	-	hypothetical protein
1693	 38.15	0	1703054..1704196	-	380	71904360	-	M28_Spy1698	-	transposase
1694	 44.71	+1	1704473..1705729	-	418	71904361	-	M28_Spy1699	-	cell surface protein
1695	 42.06	0	1705826..1709425	-	1199	71904362	scpA	M28_Spy1700	-	C5A peptidase precursor
1696	 39.74	0	1709760..1710617	-	285	71904363	-	M28_Spy1701	-	enn protein
1697	 39.34	0	1710903..1712084	-	393	71904364	-	M28_Spy1702	-	emm28 protein
1698	 40.00	0	1712309..1713463	-	384	71904365	-	M28_Spy1703	-	emm-like protein
1699	 36.80	0	1713653..1715269	-	538	71904366	mga	M28_Spy1704	-	M protein trans-acting positive regulator (Mga)
1700	 32.31	-1	1715636..1715830	+	64	71904367	-	M28_Spy1705	-	hypothetical protein
1701	 39.29	0	1715936..1716187	-	83	71904368	-	M28_Spy1706	-	hypothetical protein
1702	 44.34	+1	1716265..1717890	-	541	71904369	isp	M28_Spy1707	-	immunogenic secreted protein
1703	 38.23	0	1717992..1719380	-	462	71904370	ihk	M28_Spy1708	-	two component system histidine kinase
1704	 37.77	0	1719377..1720030	-	217	71904371	irr	M28_Spy1709	-	two-component response regulator
1705	 38.34	0	1720124..1721341	-	405	71904372	-	M28_Spy1710	-	ABC transporter permease protein
1706	 39.85	0	1721354..1722028	-	224	71904373	-	M28_Spy1711	-	ABC transporter ATP-binding protein
1707	 39.80	0	1722015..1723283	-	422	71904374	-	M28_Spy1712	-	periplasmic component of efflux system
1708	 36.49	0	1723717..1724001	-	94	71904375	-	M28_Spy1713	-	hypothetical protein
1709	 41.75	0	1724150..1724446	-	98	71904376	-	M28_Spy1714	-	hypothetical protein
1710	 45.59	+1	1724588..1726537	-	649	71904377	sfbX	M28_Spy1715	-	fibronectin-binding protein
1711	 40.02	0	1726717..1729797	-	1026	71904378	sof	M28_Spy1716	-	serum opacity factor
1712	 49.79	+2	1730221..1730457	+	78	71904379	-	M28_Spy1717	-	putative cytoplasmic protein
1713	 42.06	0	1730733..1731683	-	316	71904380	prsA	M28_Spy1718	-	foldase protein PrsA
1714	 41.82	0	1731715..1732032	-	105	71904381	-	M28_Spy1719	-	hypothetical protein
1715	 42.81	+1	1732140..1732445	-	101	71904382	-	M28_Spy1720	-	streptopain fragment
1716	 39.35	0	1732447..1733643	-	398	71904383	speB	M28_Spy1721	-	streptococcal pyrogenic exotoxin B
1717	 40.35	0	1733915..1734085	-	56	71904384	-	M28_Spy1722	-	hypothetical protein
1718	 25.76	-2	1734169..1734300	+	43	71904385	-	M28_Spy1723	-	hypothetical protein
1719	 31.55	-1	1734584..1735426	+	280	71904386	rgg	M28_Spy1724	-	transcriptional regulator
1720	 40.54	0	1735667..1736512	-	281	71904387	mf	M28_Spy1725	-	mitogenic factor
1721	 34.88	0	1736566..1736694	+	42	71904388	-	M28_Spy1726	-	hypothetical protein
1722	 43.33	+1	1736846..1737355	+	169	71904389	-	M28_Spy1727	-	low temperature requirement C protein
1723	 44.81	+1	1737437..1738525	-	362	71904390	gldA	M28_Spy1728	-	glycerol dehydrogenase
1724	 42.45	+1	1738582..1739250	-	222	71904391	mipB	M28_Spy1729	-	fructose-6-phosphate aldolase
1725	 44.46	+1	1739263..1741680	-	805	71904392	pflD	M28_Spy1730	-	formate acetyltransferase
1726	 42.15	0	1741891..1743195	-	434	71904393	-	M28_Spy1731	-	PTS system, cellobiose-specific IIC component
1727	 39.70	0	1743205..1743534	-	109	71904394	-	M28_Spy1732	-	PTS system, cellobiose-specific IIB component
1728	 37.69	0	1743541..1743861	-	106	71904395	-	M28_Spy1733	-	PTS system, cellobiose-specific IIA component
1729	 41.49	0	1744149..1745129	-	326	71904396	-	M28_Spy1734	-	sorbitol operon regulator
1730	 40.93	0	1745145..1745894	-	249	71904397	-	M28_Spy1735	-	DeoR family transcriptional regulator
1731	 40.79	0	1745960..1746790	+	276	71904398	-	M28_Spy1736	-	pyruvate formate-lyase activating enzyme
1732	 35.03	0	1747027..1747203	-	58	71904399	secE	M28_Spy1737	-	preprotein translocase subunit SecE
1733	 39.87	0	1747217..1747369	-	50	71904400	rpmG	M28_Spy1738	-	50S ribosomal protein L33
1734	 39.92	0	1747418..1749754	-	778	71904401	pbp2A	M28_Spy1739	-	multimodular transpeptidase-transglycosylase
1735	 40.16	0	1749793..1750173	-	126	71904402	-	M28_Spy1740	-	translation initiation inhibitor
1736	 40.10	0	1750665..1750856	+	63	71904403	-	M28_Spy1741	-	putative cytoplasmic protein
1737	 40.02	0	1750750..1751751	+	333	71904404	-	M28_Spy1742	-	ribosomal large subunit pseudouridine synthase D
1738	 38.43	0	1751840..1753564	-	574	71904405	-	M28_Spy1743	-	hypothetical protein
1739	 39.64	0	1753688..1755226	+	512	71904406	-	M28_Spy1744	-	dipeptidase B
1740	 41.82	0	1755712..1755876	-	54	71904407	-	M28_Spy1745	-	MutR family transcriptional regulator
1741	 36.30	0	1755949..1756218	-	89	71904408	-	M28_Spy1746	-	MutR family transcriptional regulator
1742	 43.26	+1	1756466..1758097	-	543	162139391	groEL	M28_Spy1747	-	chaperonin GroEL
1743	 41.58	0	1758133..1758423	-	96	162139390	groES	M28_Spy1748	-	co-chaperonin GroES
1744	 39.84	0	1758601..1761045	-	814	71904411	clpC	M28_Spy1749	-	negative regulator of genetic competence
1745	 39.61	0	1761045..1761506	-	153	71904412	ctsR	M28_Spy1750	-	transcriptional regulator
1746	 37.14	0	1761702..1761911	-	69	71904413	csp	M28_Spy1751	-	cold shock protein
1747	 39.75	0	1762901..1763461	+	186	71904414	ahpC	M28_Spy1752	-	peroxiredoxin reductase (NAD(P)H)
1748	 43.51	+1	1763482..1765014	+	510	71904415	ahpF	M28_Spy1753	-	peroxiredoxin reductase (NAD(P)H)
1749	 41.65	0	1765072..1766358	-	428	71904416	hutI	M28_Spy1754	-	imidazolonepropionase
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.