IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1580	 39.75	0	1581856..1582587	-	243	71904247	-	M28_Spy1585	-	glycoprotease family protein
1581	 36.02	0	1582808..1583068	+	86	71904248	-	M28_Spy1586	-	hypothetical protein
1582	 39.93	0	1583070..1584752	+	560	71904249	-	M28_Spy1587	-	Zn-dependent hydrolase
1583	 37.71	0	1584980..1586326	-	448	71904250	glnA	M28_Spy1588	-	glutamine synthetase
1584	 37.37	0	1586364..1586735	-	123	71904251	-	M28_Spy1589	-	MerR family transcriptional regulator
1585	 30.43	-1	1586802..1587353	-	183	71904252	-	M28_Spy1590	-	hypothetical protein
1586	 41.94	0	1587616..1588812	-	398	71904253	pgk	M28_Spy1591	-	phosphoglycerate kinase
1587	 35.20	0	1589005..1589859	-	284	71904254	lppC	M28_Spy1592	-	acid phosphatase
1588	 41.02	0	1590133..1590978	-	281	71904255	-	M28_Spy1593	-	membrane protease family protein
1589	 41.86	0	1591215..1592879	-	554	71904256	-	M28_Spy1594	-	kinase
1590	 37.43	0	1592879..1593244	-	121	71904257	asp	M28_Spy1595	-	putative alkaline-shock protein
1591	 39.15	0	1593396..1593584	-	62	71904258	rpmB	M28_Spy1596	-	50S ribosomal protein L28
1592	 41.84	0	1593966..1594847	-	293	71904259	fba	M28_Spy1597	-	fructose-bisphosphate aldolase
1593	 38.83	0	1595193..1596119	-	308	71904260	-	M28_Spy1598	-	alpha/beta hydrolase
1594	 40.69	0	1596287..1597891	-	534	71904261	pyrG	M28_Spy1599	-	CTP synthetase
1595	 36.46	0	1598148..1598723	-	191	162139393	rpoE	M28_Spy1600	-	DNA-directed RNA polymerase subunit delta
1596	 36.69	0	1598935..1600305	-	456	71904263	tig	M28_Spy1601	-	trigger factor
1597	 34.16	-1	1600539..1601384	+	281	71904264	-	M28_Spy1602	-	mechanosensitive ion channel
1598	 40.29	0	1601449..1602009	-	186	71904265	-	M28_Spy1603	-	hypothetical protein
1599	 39.70	0	1602023..1602493	-	156	71904266	-	M28_Spy1604	-	hypothetical protein
1600	 35.56	0	1602483..1603247	-	254	71904267	thiD	M28_Spy1605	-	phosphomethylpyrimidine kinase
1601	 36.00	0	1603237..1603986	-	249	71904268	truA	M28_Spy1606	-	tRNA pseudouridine synthase A
1602	 36.94	0	1604171..1604752	-	193	71904269	comX.2	M28_Spy1607	-	competence-specific sigma factor
1603	 36.30	0	1610144..1610278	+	44	71904270	-	M28_Spy1608	-	hypothetical protein
1604	 39.46	0	1610442..1611584	-	380	71904271	-	M28_Spy1609	-	glycerate kinase
1605	 39.01	0	1611865..1614843	+	992	71904272	hsdR	M28_Spy1610	-	type I restriction-modification system restriction subunit
1606	 35.61	0	1614856..1616043	+	395	71904273	hsdS	M28_Spy1611	-	type I restriction-modification system specificity subunit
1607	 36.75	0	1616056..1617636	+	526	71904274	hsdM	M28_Spy1612	-	type I restriction-modification system methylation subunit
1608	 32.29	-1	1617846..1618037	-	63	71904276	-	M28_Spy1614	-	hypothetical protein
1609	 26.67	-2	1618012..1618131	+	39	71904275	-	M28_Spy1613	-	hypothetical protein
1610	 30.69	-1	1618188..1618793	-	201	71904277	salR	M28_Spy1615	-	transcriptional regulatory protein
1611	 29.62	-2	1618774..1620336	-	520	71904278	-	M28_Spy1616	-	sensory transduction protein kinase
1612	 30.66	-1	1620376..1622283	-	635	71904279	salY	M28_Spy1617	-	ABC transporter permease protein
1613	 31.84	-1	1622285..1623022	-	245	71904280	-	M28_Spy1618	-	ABC transporter ATP-binding protein
1614	 33.33	-1	1623019..1623498	-	159	71904281	salX	M28_Spy1619	-	lantibiotic transport ATP-binding protein
1615	 30.75	-1	1623554..1625179	-	541	71904282	salB	M28_Spy1620	-	serine (threonine) dehydratase
1616	 33.97	-1	1625261..1625416	-	51	71904283	salA	M28_Spy1621	-	lantibiotic salivaricin A
1617	 38.31	0	1625919..1627325	-	468	71904284	lacG	M28_Spy1622	-	6-phospho-beta-galactosidase
1618	 38.52	0	1627398..1629095	-	565	71904285	lacE	M28_Spy1623	-	PTS system, lactose-specific IIBC component
1619	 36.79	0	1629095..1629412	-	105	71904286	lacF	M28_Spy1624	-	PTS system, lactose-specific IIA component
1620	 37.80	0	1629436..1630419	-	327	71904287	lacD.2	M28_Spy1625	-	tagatose 1,6-diphosphate aldolase
1621	 35.91	0	1630422..1631351	-	309	71904288	lacC.2	M28_Spy1626	-	tagatose-6-phosphate kinase
1622	 37.60	0	1631397..1631912	-	171	71904289	lacB.2	M28_Spy1627	-	galactose-6-phosphate isomerase subunit LacB
1623	 38.46	0	1631947..1632375	-	142	71904290	lacA.2	M28_Spy1628	-	galactose-6-phosphate isomerase subunit LacA
1624	 33.98	-1	1632821..1633594	+	257	71904291	lacR.2	M28_Spy1629	-	lactose phosphotransferase system repressor
1625	 34.18	-1	1634294..1634530	+	78	71904292	-	M28_Spy1630	-	DNA-damage-inducible protein J
1626	 33.33	-1	1634520..1634855	+	111	71904293	-	M28_Spy1631	-	putative cytoplasmic protein
1627	 41.23	0	1635136..1635477	+	113	71904294	-	M28_Spy1632	-	DNA integration/recombination/invertion protein
1628	 35.33	0	1635838..1635987	+	49	71904295	-	M28_Spy1633	-	DNA integration/recombination/invertion protein
1629	 45.04	+1	1636120..1636512	-	130	71904296	rpsI	M28_Spy1634	-	30S ribosomal protein S9
1630	 41.16	0	1636533..1636979	-	148	162139392	rplM	M28_Spy1635	-	50S ribosomal protein L13
1631	 41.55	0	1637197..1637403	-	68	71904298	-	M28_Spy1636	-	Cro/CI family transcriptional regulator
1632	 42.21	0	1637400..1638131	-	243	71904299	-	M28_Spy1637	-	hypothetical protein
1633	 42.51	+1	1638234..1639094	-	286	71904300	-	M28_Spy1638	-	DegV family protein
1634	 36.22	0	1639191..1639709	-	172	71904301	-	M28_Spy1639	-	putative cytoplasmic protein
1635	 38.63	0	1639713..1640486	-	257	71904302	-	M28_Spy1640	-	23S rRNA methyltransferase
1636	 37.22	0	1640506..1641303	-	265	71904303	-	M28_Spy1641	-	hypothetical protein
1637	 39.13	0	1641499..1641912	-	137	71904304	-	M28_Spy1642	-	hypothetical protein
1638	 41.00	0	1641905..1643248	-	447	71904305	cysS	M28_Spy1643	-	cysteinyl-tRNA synthetase
1639	 30.30	-1	1643276..1643506	-	76	71904306	-	M28_Spy1644	-	hypothetical protein
1640	 41.39	0	1643519..1643791	-	90	71904307	-	M28_Spy1645	-	putative cytoplasmic protein
1641	 43.30	+1	1643985..1644566	-	193	71904308	cysE	M28_Spy1646	-	serine acetyltransferase
1642	 39.97	0	1644575..1645327	-	250	71904309	-	M28_Spy1647	-	hypothetical protein
1643	 44.87	+1	1645320..1647452	-	710	71904310	-	M28_Spy1648	-	polynucleotide phosphorylase/polyadenylase
1644	 41.12	0	1647732..1648463	-	243	71904311	-	M28_Spy1649	-	putative translaldolase
1645	 44.13	+1	1648473..1649852	-	459	71904312	ulaA	M28_Spy1650	-	ascorbate-specific PTS system enzyme IIC
1646	 37.58	0	1649879..1650184	-	101	71904313	-	M28_Spy1651	-	PTS system, IIB component
1647	 40.59	0	1650156..1652318	-	720	71904314	-	M28_Spy1652	-	PTS system, mannitol (cryptic)-specific IIA component
1648	 34.85	0	1652454..1652585	-	43	71904315	-	M28_Spy1653	-	hypothetical protein
1649	 41.11	0	1652569..1652838	-	89	71904316	rpsO	M28_Spy1654	-	30S ribosomal protein S15
1650	 42.31	+1	1652996..1653151	-	51	71904317	-	M28_Spy1655	-	hypothetical protein
1651	 40.70	0	1653277..1653534	+	85	71904318	-	M28_Spy1656	-	putative transcriptional regulator
1652	 40.33	0	1653660..1654274	+	204	71904319	def	M28_Spy1657	-	peptide deformylase
1653	 42.36	+1	1654307..1654849	-	180	71904320	-	M28_Spy1658	-	oxidoreductase
1654	 39.22	0	1654980..1655438	-	152	71904321	-	M28_Spy1659	-	MarR family transcriptional regulator
1655	 43.84	+1	1655518..1659915	-	1465	71904322	polC	M28_Spy1660	-	DNA polymerase III PolC
1656	 43.62	+1	1660169..1662025	-	618	71904323	proS	M28_Spy1661	-	prolyl-tRNA synthetase
1657	 40.63	0	1662223..1663482	-	419	71904324	-	M28_Spy1662	-	pheromone-processing membrane metalloprotease
1658	 39.37	0	1663555..1664349	-	264	71904325	cdsA	M28_Spy1663	-	phosphatidate cytidylyltransferase
1659	 40.80	0	1664362..1665111	-	249	71904326	uppS	M28_Spy1664	-	undecaprenyl pyrophosphate synthetase
1660	 39.34	0	1665330..1665695	-	121	71904327	yajC	M28_Spy1665	-	preprotein translocase subunit YajC
1661	 42.93	+1	1665811..1666185	-	124	71904328	-	M28_Spy1666	-	thioredoxin
1662	 43.04	+1	1666300..1669824	-	1174	71904330	pulA	M28_Spy1668	-	pullulanase
1663	 39.83	0	1669781..1670011	+	76	71904329	-	M28_Spy1667	-	hypothetical protein
1664	 43.55	+1	1669995..1671629	-	544	71904331	dexB	M28_Spy1669	-	glucan 1,6-alpha-glucosidase
1665	 42.50	+1	1671737..1672870	-	377	71904332	msmK	M28_Spy1670	-	multiple sugar transport ATP-binding protein
1666	 44.56	+1	1673168..1674058	-	296	71904333	lrp	M28_Spy1671	-	leucine rich protein
1667	 40.29	0	1674356..1675678	+	440	71904334	ska	M28_Spy1672	-	streptokinase
1668	 43.24	+1	1675776..1676219	-	147	71904335	-	M28_Spy1673	-	D-tyrosyl-tRNA deacylase
1669	 44.22	+1	1676234..1678465	-	743	71904336	relA	M28_Spy1674	-	GTP pyrophosphokinase
1670	 50.22	+2	1678705..1680072	-	455	71904337	sclA	M28_Spy1675	-	collagen-like surface protein A
1671	 47.00	+2	1680454..1680936	+	160	71904338	-	M28_Spy1676	-	hypothetical protein
1672	 42.62	+1	1681330..1682169	-	279	71904339	-	M28_Spy1677	-	exodeoxyribonuclease III
1673	 44.63	+1	1682231..1684417	-	728	71904340	-	M28_Spy1678	-	PTS system, glucose-specific IIABC component
1674	 44.13	+1	1684774..1685523	-	249	71904341	-	M28_Spy1679	-	putative cytoplasmic protein
1675	 44.34	+1	1685523..1686476	-	317	71904342	prmA	M28_Spy1680	-	ribosomal protein L11 methyltransferase
1676	 39.49	0	1686546..1687016	-	156	71904343	-	M28_Spy1681	-	hypothetical protein
1677	 44.50	+1	1687211..1688974	+	587	71904344	-	M28_Spy1682	-	4-amino-4-deoxychorismate lyase
1678	 45.33	+1	1689007..1689573	+	188	71904345	trpG	M28_Spy1683	-	anthranilate synthase component II
1679	 42.95	+1	1689606..1690874	+	422	71904346	-	M28_Spy1684	-	recombination factor protein RarA
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.