IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1533	 38.84	0	1540112..1541056	+	314	71904200	corA	M28_Spy1538	-	magnesium and cobalt transport protein
1534	 40.94	0	1541189..1541845	+	218	71904201	-	M28_Spy1539	-	hypothetical protein
1535	 40.83	0	1541978..1542217	-	79	71904202	rpsR	M28_Spy1540	-	30S ribosomal protein S18
1536	 42.89	+1	1542382..1542873	-	163	71904203	ssb2.2	M28_Spy1541	-	single-strand DNA-binding protein
1537	 39.86	0	1542895..1543185	-	96	71904204	rpsF	M28_Spy1542	-	30S ribosomal protein S6
1538	 31.63	-1	1543358..1543651	-	97	71904205	-	M28_Spy1543	-	hypothetical protein
1539	 38.53	0	1543819..1544973	+	384	71904206	mutY	M28_Spy1544	-	A/G-specific adenine DNA glycosylase
1540	 33.85	-1	1545040..1545426	+	128	71904207	-	M28_Spy1545	-	transcriptional regulator
1541	 32.44	-1	1545413..1545637	+	74	71904208	-	M28_Spy1546	-	transcriptional regulator
1542	 34.45	0	1545689..1546045	-	118	71904209	trx.2	M28_Spy1547	-	thioredoxin
1543	 31.75	-1	1546084..1546587	-	167	71904210	-	M28_Spy1548	-	phosphatidylglycerophosphatase B
1544	 36.71	0	1546588..1549044	-	818	71904211	mutS2	M28_Spy1549	-	DNA mismatch repair protein
1545	 34.25	-1	1549076..1549621	-	181	71904212	-	M28_Spy1550	-	colicin V production protein
1546	 33.01	-1	1549624..1549932	-	102	71904213	-	M28_Spy1551	-	putative cytoplasmic protein
1547	 36.88	0	1550089..1550991	+	300	71904214	-	M28_Spy1552	-	ribonuclease HIII
1548	 37.42	0	1550936..1551595	+	219	71904215	spi	M28_Spy1553	-	signal peptidase I
1549	 41.54	0	1551653..1554016	+	787	71904216	recD	M28_Spy1554	-	exodeoxyribonuclease V alpha chain
1550	 36.65	0	1554107..1554589	+	160	71904217	-	M28_Spy1555	-	hypothetical protein
1551	 41.74	0	1554682..1555776	-	364	71904218	dinP	M28_Spy1556	-	DNA polymerase IV
1552	 41.70	0	1555958..1558312	+	784	71904219	pfl	M28_Spy1557	-	formate acetyltransferase
1553	 37.12	0	1558492..1559442	-	316	71904220	-	M28_Spy1558	-	penicillin-binding protein
1554	 35.06	0	1559427..1560179	-	250	71904221	-	M28_Spy1559	-	C3-degrading proteinase
1555	 38.26	0	1560441..1561373	+	310	71904222	-	M28_Spy1560	-	hypothetical protein
1556	 38.08	0	1561709..1562656	-	315	71904223	glpF.2	M28_Spy1561	-	aquaporin
1557	 29.93	-2	1562727..1562873	-	48	71904224	-	M28_Spy1562	-	universal stress protein
1558	 38.48	0	1563059..1564360	-	433	71904225	norA	M28_Spy1563	-	quinolone resistance norA protein
1559	 31.94	-1	1564361..1565080	+	239	71904226	srv	M28_Spy1564	-	Crp family transcriptional regulator
1560	 39.64	0	1565102..1567384	+	760	71904227	pepXP	M28_Spy1565	-	x-prolyl-dipeptidyl aminopeptidase
1561	 34.23	-1	1567464..1567685	-	73	71904228	-	M28_Spy1566	-	Cro/CI family transcriptional regulator
1562	 34.93	0	1567855..1568229	+	124	71904229	-	M28_Spy1567	-	transcriptional regulator
1563	 40.33	0	1568422..1568721	+	99	71904230	-	M28_Spy1568	-	hypothetical protein
1564	 40.95	0	1568778..1569512	-	244	71904231	-	M28_Spy1569	-	MerR family transcriptional regulator
1565	 39.55	0	1569659..1570285	-	208	71904232	dnaQ	M28_Spy1570	-	DNA polymerase III subunit epsilon
1566	 38.83	0	1570295..1570876	-	193	71904233	-	M28_Spy1571	-	putative cytoplasmic protein
1567	 32.32	-1	1571029..1571520	-	163	71904234	-	M28_Spy1572	-	hypothetical protein
1568	 35.00	0	1571517..1571756	-	79	71904235	-	M28_Spy1573	-	ABC transporter ATP-binding protein
1569	 27.38	-2	1571803..1572138	-	111	71904236	-	M28_Spy1574	-	ABC transporter ATP-binding protein
1570	 28.91	-2	1572135..1574123	-	662	71904237	-	M28_Spy1575	-	ABC transporter permease
1571	 36.96	0	1574225..1574500	-	91	71904238	-	M28_Spy1576	-	hypothetical protein
1572	 42.74	+1	1574785..1575954	+	389	71904239	-	M28_Spy1577	-	NAD(FAD)-utilizing dehydrogenase
1573	 37.50	0	1576049..1576720	-	223	71904240	deoC	M28_Spy1578	-	deoxyribose-phosphate aldolase
1574	 36.13	0	1576750..1577964	-	404	71904241	nupC	M28_Spy1579	-	nucleoside permease
1575	 40.90	0	1577973..1578752	-	259	71904242	udp	M28_Spy1580	-	uridine phosphorylase
1576	 35.97	0	1578992..1579750	+	252	71904243	crgR	M28_Spy1581	-	GntR family transcriptional regulator
1577	 44.81	+1	1579971..1580240	+	89	71904244	rpsN	M28_Spy1582	-	30S ribosomal protein S14
1578	 41.59	0	1580411..1581439	-	342	71904245	-	M28_Spy1583	-	O-sialoglycoprotein endopeptidase
1579	 34.21	-1	1581429..1581884	-	151	71904246	-	M28_Spy1584	-	ribosomal-protein-alanine acetyltransferase
1580	 39.75	0	1581856..1582587	-	243	71904247	-	M28_Spy1585	-	glycoprotease family protein
1581	 36.02	0	1582808..1583068	+	86	71904248	-	M28_Spy1586	-	hypothetical protein
1582	 39.93	0	1583070..1584752	+	560	71904249	-	M28_Spy1587	-	Zn-dependent hydrolase
1583	 37.71	0	1584980..1586326	-	448	71904250	glnA	M28_Spy1588	-	glutamine synthetase
1584	 37.37	0	1586364..1586735	-	123	71904251	-	M28_Spy1589	-	MerR family transcriptional regulator
1585	 30.43	-1	1586802..1587353	-	183	71904252	-	M28_Spy1590	-	hypothetical protein
1586	 41.94	0	1587616..1588812	-	398	71904253	pgk	M28_Spy1591	-	phosphoglycerate kinase
1587	 35.20	0	1589005..1589859	-	284	71904254	lppC	M28_Spy1592	-	acid phosphatase
1588	 41.02	0	1590133..1590978	-	281	71904255	-	M28_Spy1593	-	membrane protease family protein
1589	 41.86	0	1591215..1592879	-	554	71904256	-	M28_Spy1594	-	kinase
1590	 37.43	0	1592879..1593244	-	121	71904257	asp	M28_Spy1595	-	putative alkaline-shock protein
1591	 39.15	0	1593396..1593584	-	62	71904258	rpmB	M28_Spy1596	-	50S ribosomal protein L28
1592	 41.84	0	1593966..1594847	-	293	71904259	fba	M28_Spy1597	-	fructose-bisphosphate aldolase
1593	 38.83	0	1595193..1596119	-	308	71904260	-	M28_Spy1598	-	alpha/beta hydrolase
1594	 40.69	0	1596287..1597891	-	534	71904261	pyrG	M28_Spy1599	-	CTP synthetase
1595	 36.46	0	1598148..1598723	-	191	162139393	rpoE	M28_Spy1600	-	DNA-directed RNA polymerase subunit delta
1596	 36.69	0	1598935..1600305	-	456	71904263	tig	M28_Spy1601	-	trigger factor
1597	 34.16	-1	1600539..1601384	+	281	71904264	-	M28_Spy1602	-	mechanosensitive ion channel
1598	 40.29	0	1601449..1602009	-	186	71904265	-	M28_Spy1603	-	hypothetical protein
1599	 39.70	0	1602023..1602493	-	156	71904266	-	M28_Spy1604	-	hypothetical protein
1600	 35.56	0	1602483..1603247	-	254	71904267	thiD	M28_Spy1605	-	phosphomethylpyrimidine kinase
1601	 36.00	0	1603237..1603986	-	249	71904268	truA	M28_Spy1606	-	tRNA pseudouridine synthase A
1602	 36.94	0	1604171..1604752	-	193	71904269	comX.2	M28_Spy1607	-	competence-specific sigma factor
1603	 36.30	0	1610144..1610278	+	44	71904270	-	M28_Spy1608	-	hypothetical protein
1604	 39.46	0	1610442..1611584	-	380	71904271	-	M28_Spy1609	-	glycerate kinase
1605	 39.01	0	1611865..1614843	+	992	71904272	hsdR	M28_Spy1610	-	type I restriction-modification system restriction subunit
1606	 35.61	0	1614856..1616043	+	395	71904273	hsdS	M28_Spy1611	-	type I restriction-modification system specificity subunit
1607	 36.75	0	1616056..1617636	+	526	71904274	hsdM	M28_Spy1612	-	type I restriction-modification system methylation subunit
1608	 32.29	-1	1617846..1618037	-	63	71904276	-	M28_Spy1614	-	hypothetical protein
1609	 26.67	-2	1618012..1618131	+	39	71904275	-	M28_Spy1613	-	hypothetical protein
1610	 30.69	-1	1618188..1618793	-	201	71904277	salR	M28_Spy1615	-	transcriptional regulatory protein
1611	 29.62	-2	1618774..1620336	-	520	71904278	-	M28_Spy1616	-	sensory transduction protein kinase
1612	 30.66	-1	1620376..1622283	-	635	71904279	salY	M28_Spy1617	-	ABC transporter permease protein
1613	 31.84	-1	1622285..1623022	-	245	71904280	-	M28_Spy1618	-	ABC transporter ATP-binding protein
1614	 33.33	-1	1623019..1623498	-	159	71904281	salX	M28_Spy1619	-	lantibiotic transport ATP-binding protein
1615	 30.75	-1	1623554..1625179	-	541	71904282	salB	M28_Spy1620	-	serine (threonine) dehydratase
1616	 33.97	-1	1625261..1625416	-	51	71904283	salA	M28_Spy1621	-	lantibiotic salivaricin A
1617	 38.31	0	1625919..1627325	-	468	71904284	lacG	M28_Spy1622	-	6-phospho-beta-galactosidase
1618	 38.52	0	1627398..1629095	-	565	71904285	lacE	M28_Spy1623	-	PTS system, lactose-specific IIBC component
1619	 36.79	0	1629095..1629412	-	105	71904286	lacF	M28_Spy1624	-	PTS system, lactose-specific IIA component
1620	 37.80	0	1629436..1630419	-	327	71904287	lacD.2	M28_Spy1625	-	tagatose 1,6-diphosphate aldolase
1621	 35.91	0	1630422..1631351	-	309	71904288	lacC.2	M28_Spy1626	-	tagatose-6-phosphate kinase
1622	 37.60	0	1631397..1631912	-	171	71904289	lacB.2	M28_Spy1627	-	galactose-6-phosphate isomerase subunit LacB
1623	 38.46	0	1631947..1632375	-	142	71904290	lacA.2	M28_Spy1628	-	galactose-6-phosphate isomerase subunit LacA
1624	 33.98	-1	1632821..1633594	+	257	71904291	lacR.2	M28_Spy1629	-	lactose phosphotransferase system repressor
1625	 34.18	-1	1634294..1634530	+	78	71904292	-	M28_Spy1630	-	DNA-damage-inducible protein J
1626	 33.33	-1	1634520..1634855	+	111	71904293	-	M28_Spy1631	-	putative cytoplasmic protein
1627	 41.23	0	1635136..1635477	+	113	71904294	-	M28_Spy1632	-	DNA integration/recombination/invertion protein
1628	 35.33	0	1635838..1635987	+	49	71904295	-	M28_Spy1633	-	DNA integration/recombination/invertion protein
1629	 45.04	+1	1636120..1636512	-	130	71904296	rpsI	M28_Spy1634	-	30S ribosomal protein S9
1630	 41.16	0	1636533..1636979	-	148	162139392	rplM	M28_Spy1635	-	50S ribosomal protein L13
1631	 41.55	0	1637197..1637403	-	68	71904298	-	M28_Spy1636	-	Cro/CI family transcriptional regulator
1632	 42.21	0	1637400..1638131	-	243	71904299	-	M28_Spy1637	-	hypothetical protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.