IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1493	 51.43	+2	1492175..1492384	-	69	71904160	-	M28_Spy1498	-	pyruvate, phosphate dikinase
1494	 41.30	0	1492356..1492493	-	45	71904161	-	M28_Spy1499	-	pyruvate, phosphate dikinase
1495	 36.20	0	1492937..1493494	-	185	71904162	-	M28_Spy1500	-	nicotinamidase
1496	 37.47	0	1493638..1494483	-	281	71904163	codY	M28_Spy1501	-	transcriptional repressor CodY
1497	 39.09	0	1494638..1495852	-	404	162139394	-	M28_Spy1502	-	aminotransferase AlaT
1498	 36.28	0	1495993..1496535	+	180	71904165	-	M28_Spy1503	-	universal stress protein
1499	 37.72	0	1496658..1498046	-	462	71904166	-	M28_Spy1504	-	HAD superfamily hydrolase
1500	 39.34	0	1498118..1499083	+	321	71904167	asnB	M28_Spy1505	-	L-asparaginase
1501	 30.92	-1	1499432..1500136	-	234	71904168	-	M28_Spy1506	-	hypothetical protein
1502	 34.95	0	1500149..1500334	-	61	71904169	-	M28_Spy1507	-	putative ATP transporter
1503	 35.65	0	1500363..1501052	-	229	71904170	-	M28_Spy1508	-	putative ATP transporter
1504	 36.95	0	1501345..1503360	-	671	71904171	recG	M28_Spy1509	-	ATP-dependent DNA helicase
1505	 34.04	-1	1503557..1503697	+	46	71904172	-	M28_Spy1510	-	hypothetical protein
1506	 38.69	0	1503735..1505189	-	484	71904173	-	M28_Spy1511	-	cobalt transport ATP-binding protein cbiO
1507	 36.56	0	1505126..1505806	-	226	71904174	-	M28_Spy1512	-	cobalt transport protein cbiQ
1508	 35.52	0	1505803..1506396	-	197	71904175	-	M28_Spy1513	-	permease
1509	 35.80	0	1506393..1508096	-	567	71904176	-	M28_Spy1514	-	ABC transporter ATP-binding protein
1510	 38.10	0	1508056..1509819	-	587	71904177	-	M28_Spy1515	-	ABC transporter ATP-binding protein
1511	 41.34	0	1509816..1510652	-	278	71904178	fhuC	M28_Spy1516	-	ferrichrome transport ATP-binding protein
1512	 41.24	0	1510649..1511698	-	349	71904179	-	M28_Spy1517	-	ferrichrome transport system permease protein fhuB
1513	 40.31	0	1511673..1512590	-	305	71904180	-	M28_Spy1518	-	ferrichrome-binding protein
1514	 36.30	0	1512541..1513416	-	291	71904181	shp	M28_Spy1519	-	putative heme binding protein
1515	 35.63	0	1513613..1517446	-	1277	71904182	-	M28_Spy1520	-	putative Fe3+-siderophore transport protein
1516	 40.81	0	1517930..1519441	-	503	71904183	isp2	M28_Spy1521	-	immunogenic secreted protein
1517	 39.60	0	1519528..1520628	-	366	71904184	alr	M28_Spy1522	-	alanine racemase
1518	 36.69	0	1520625..1520981	-	118	71904185	acpS	M28_Spy1523	-	4'-phosphopantetheinyl transferase
1519	 41.19	0	1521097..1523616	-	839	71904186	secA	M28_Spy1524	-	preprotein translocase subunit SecA
1520	 40.78	0	1523750..1524703	-	317	71904187	pmi	M28_Spy1525	-	mannose-6-phosphate isomerase
1521	 45.35	+1	1524798..1525754	-	318	71904188	scrK	M28_Spy1526	-	fructokinase
1522	 37.70	0	1525946..1529014	-	1022	71904189	endoS	M28_Spy1527	-	endo-beta-N-acetylglucosaminidase F2 precursor
1523	 32.73	-1	1528984..1529148	-	54	71904190	-	M28_Spy1528	-	hypothetical protein
1524	 43.15	+1	1529191..1531074	-	627	71904191	scrA	M28_Spy1529	-	PTS system, sucrose-specific IIABC component
1525	 42.41	+1	1531313..1532755	+	480	71904192	scrB	M28_Spy1530	-	sucrose-6-phosphate hydrolase
1526	 38.61	0	1532760..1533725	+	321	71904193	scrR	M28_Spy1531	-	sucrose operon repressor
1527	 36.73	0	1533866..1534336	-	156	71904194	nusB	M28_Spy1532	-	transcription antitermination protein NusB
1528	 37.95	0	1534311..1534700	-	129	71904195	-	M28_Spy1533	-	Gls24 family general stress protein
1529	 40.32	0	1534746..1535303	-	185	71904196	efp	M28_Spy1534	-	elongation factor P
1530	 42.95	+1	1535391..1535858	-	155	71904197	comEB	M28_Spy1535	-	ComE operon protein 2
1531	 42.77	+1	1535892..1537004	-	370	71904198	-	M28_Spy1536	-	Xaa-Pro dipeptidase
1532	 42.60	+1	1537081..1539939	-	952	71904199	uvrA	M28_Spy1537	-	excinuclease ABC subunit A
1533	 38.84	0	1540112..1541056	+	314	71904200	corA	M28_Spy1538	-	magnesium and cobalt transport protein
1534	 40.94	0	1541189..1541845	+	218	71904201	-	M28_Spy1539	-	hypothetical protein
1535	 40.83	0	1541978..1542217	-	79	71904202	rpsR	M28_Spy1540	-	30S ribosomal protein S18
1536	 42.89	+1	1542382..1542873	-	163	71904203	ssb2.2	M28_Spy1541	-	single-strand DNA-binding protein
1537	 39.86	0	1542895..1543185	-	96	71904204	rpsF	M28_Spy1542	-	30S ribosomal protein S6
1538	 31.63	-1	1543358..1543651	-	97	71904205	-	M28_Spy1543	-	hypothetical protein
1539	 38.53	0	1543819..1544973	+	384	71904206	mutY	M28_Spy1544	-	A/G-specific adenine DNA glycosylase
1540	 33.85	-1	1545040..1545426	+	128	71904207	-	M28_Spy1545	-	transcriptional regulator
1541	 32.44	-1	1545413..1545637	+	74	71904208	-	M28_Spy1546	-	transcriptional regulator
1542	 34.45	0	1545689..1546045	-	118	71904209	trx.2	M28_Spy1547	-	thioredoxin
1543	 31.75	-1	1546084..1546587	-	167	71904210	-	M28_Spy1548	-	phosphatidylglycerophosphatase B
1544	 36.71	0	1546588..1549044	-	818	71904211	mutS2	M28_Spy1549	-	DNA mismatch repair protein
1545	 34.25	-1	1549076..1549621	-	181	71904212	-	M28_Spy1550	-	colicin V production protein
1546	 33.01	-1	1549624..1549932	-	102	71904213	-	M28_Spy1551	-	putative cytoplasmic protein
1547	 36.88	0	1550089..1550991	+	300	71904214	-	M28_Spy1552	-	ribonuclease HIII
1548	 37.42	0	1550936..1551595	+	219	71904215	spi	M28_Spy1553	-	signal peptidase I
1549	 41.54	0	1551653..1554016	+	787	71904216	recD	M28_Spy1554	-	exodeoxyribonuclease V alpha chain
1550	 36.65	0	1554107..1554589	+	160	71904217	-	M28_Spy1555	-	hypothetical protein
1551	 41.74	0	1554682..1555776	-	364	71904218	dinP	M28_Spy1556	-	DNA polymerase IV
1552	 41.70	0	1555958..1558312	+	784	71904219	pfl	M28_Spy1557	-	formate acetyltransferase
1553	 37.12	0	1558492..1559442	-	316	71904220	-	M28_Spy1558	-	penicillin-binding protein
1554	 35.06	0	1559427..1560179	-	250	71904221	-	M28_Spy1559	-	C3-degrading proteinase
1555	 38.26	0	1560441..1561373	+	310	71904222	-	M28_Spy1560	-	hypothetical protein
1556	 38.08	0	1561709..1562656	-	315	71904223	glpF.2	M28_Spy1561	-	aquaporin
1557	 29.93	-2	1562727..1562873	-	48	71904224	-	M28_Spy1562	-	universal stress protein
1558	 38.48	0	1563059..1564360	-	433	71904225	norA	M28_Spy1563	-	quinolone resistance norA protein
1559	 31.94	-1	1564361..1565080	+	239	71904226	srv	M28_Spy1564	-	Crp family transcriptional regulator
1560	 39.64	0	1565102..1567384	+	760	71904227	pepXP	M28_Spy1565	-	x-prolyl-dipeptidyl aminopeptidase
1561	 34.23	-1	1567464..1567685	-	73	71904228	-	M28_Spy1566	-	Cro/CI family transcriptional regulator
1562	 34.93	0	1567855..1568229	+	124	71904229	-	M28_Spy1567	-	transcriptional regulator
1563	 40.33	0	1568422..1568721	+	99	71904230	-	M28_Spy1568	-	hypothetical protein
1564	 40.95	0	1568778..1569512	-	244	71904231	-	M28_Spy1569	-	MerR family transcriptional regulator
1565	 39.55	0	1569659..1570285	-	208	71904232	dnaQ	M28_Spy1570	-	DNA polymerase III subunit epsilon
1566	 38.83	0	1570295..1570876	-	193	71904233	-	M28_Spy1571	-	putative cytoplasmic protein
1567	 32.32	-1	1571029..1571520	-	163	71904234	-	M28_Spy1572	-	hypothetical protein
1568	 35.00	0	1571517..1571756	-	79	71904235	-	M28_Spy1573	-	ABC transporter ATP-binding protein
1569	 27.38	-2	1571803..1572138	-	111	71904236	-	M28_Spy1574	-	ABC transporter ATP-binding protein
1570	 28.91	-2	1572135..1574123	-	662	71904237	-	M28_Spy1575	-	ABC transporter permease
1571	 36.96	0	1574225..1574500	-	91	71904238	-	M28_Spy1576	-	hypothetical protein
1572	 42.74	+1	1574785..1575954	+	389	71904239	-	M28_Spy1577	-	NAD(FAD)-utilizing dehydrogenase
1573	 37.50	0	1576049..1576720	-	223	71904240	deoC	M28_Spy1578	-	deoxyribose-phosphate aldolase
1574	 36.13	0	1576750..1577964	-	404	71904241	nupC	M28_Spy1579	-	nucleoside permease
1575	 40.90	0	1577973..1578752	-	259	71904242	udp	M28_Spy1580	-	uridine phosphorylase
1576	 35.97	0	1578992..1579750	+	252	71904243	crgR	M28_Spy1581	-	GntR family transcriptional regulator
1577	 44.81	+1	1579971..1580240	+	89	71904244	rpsN	M28_Spy1582	-	30S ribosomal protein S14
1578	 41.59	0	1580411..1581439	-	342	71904245	-	M28_Spy1583	-	O-sialoglycoprotein endopeptidase
1579	 34.21	-1	1581429..1581884	-	151	71904246	-	M28_Spy1584	-	ribosomal-protein-alanine acetyltransferase
1580	 39.75	0	1581856..1582587	-	243	71904247	-	M28_Spy1585	-	glycoprotease family protein
1581	 36.02	0	1582808..1583068	+	86	71904248	-	M28_Spy1586	-	hypothetical protein
1582	 39.93	0	1583070..1584752	+	560	71904249	-	M28_Spy1587	-	Zn-dependent hydrolase
1583	 37.71	0	1584980..1586326	-	448	71904250	glnA	M28_Spy1588	-	glutamine synthetase
1584	 37.37	0	1586364..1586735	-	123	71904251	-	M28_Spy1589	-	MerR family transcriptional regulator
1585	 30.43	-1	1586802..1587353	-	183	71904252	-	M28_Spy1590	-	hypothetical protein
1586	 41.94	0	1587616..1588812	-	398	71904253	pgk	M28_Spy1591	-	phosphoglycerate kinase
1587	 35.20	0	1589005..1589859	-	284	71904254	lppC	M28_Spy1592	-	acid phosphatase
1588	 41.02	0	1590133..1590978	-	281	71904255	-	M28_Spy1593	-	membrane protease family protein
1589	 41.86	0	1591215..1592879	-	554	71904256	-	M28_Spy1594	-	kinase
1590	 37.43	0	1592879..1593244	-	121	71904257	asp	M28_Spy1595	-	putative alkaline-shock protein
1591	 39.15	0	1593396..1593584	-	62	71904258	rpmB	M28_Spy1596	-	50S ribosomal protein L28
1592	 41.84	0	1593966..1594847	-	293	71904259	fba	M28_Spy1597	-	fructose-bisphosphate aldolase
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.