IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1421	 43.02	+1	1425467..1425724	-	85	71904088	-	M28_Spy1426	-	hypothetical protein
1422	 43.38	+1	1425878..1427917	-	679	71904089	glyS	M28_Spy1427	-	glycyl-tRNA synthetase subunit beta
1423	 43.03	+1	1428295..1429212	-	305	71904090	glyQ	M28_Spy1428	-	glycyl-tRNA synthetase subunit alpha
1424	 35.02	0	1429584..1430117	-	177	71904091	-	M28_Spy1429	-	hypothetical protein
1425	 41.28	0	1430249..1431091	-	280	71904092	-	M28_Spy1430	-	aldo/keto reductase
1426	 43.60	+1	1431210..1432358	-	382	71904093	nagA	M28_Spy1431	-	N-acetylglucosamine-6-phosphate deacetylase
1427	 38.73	0	1432475..1434124	-	549	71904094	-	M28_Spy1432	-	sodium-dependent phosphate transporter
1428	 39.97	0	1434308..1435030	+	240	71904095	-	M28_Spy1433	-	hypothetical protein
1429	 38.08	0	1435159..1436001	-	280	71904096	-	M28_Spy1434	-	degV family protein
1430	 36.19	0	1436291..1436851	+	186	71904097	-	M28_Spy1435	-	TetR family transcriptional regulator
1431	 41.95	0	1436887..1437768	-	293	71904098	-	M28_Spy1436	-	HAD superfamily hydrolase
1432	 42.23	0	1437713..1438330	-	205	71904099	-	M28_Spy1437	-	hypothetical protein
1433	 40.70	0	1438527..1439504	-	325	71904100	lacD.1	M28_Spy1438	-	tagatose 1,6-diphosphate aldolase
1434	 41.67	0	1439586..1439849	-	87	71904101	-	M28_Spy1439	-	tagatose-6-phosphate kinase
1435	 38.54	0	1440014..1440532	-	172	71904102	lacB.1	M28_Spy1440	-	galactose-6-phosphate isomerase subunit LacB
1436	 41.55	0	1440544..1440969	-	141	71904103	lacA.1	M28_Spy1441	-	galactose-6-phosphate isomerase subunit LacA
1437	 41.60	0	1441226..1442677	-	483	71904104	-	M28_Spy1442	-	PTS system, galactose-specific IIC component
1438	 42.16	0	1442703..1443008	-	101	71904105	-	M28_Spy1443	-	PTS system, galactose-specific IIB component
1439	 38.82	0	1443001..1443474	-	157	71904106	-	M28_Spy1444	-	PTS system, galactose-specific IIA component
1440	 36.19	0	1443711..1444481	+	256	71904107	lacR.1	M28_Spy1445	-	lactose phosphotransferase system repressor
1441	 41.52	0	1444508..1444678	-	56	71904108	-	M28_Spy1446	-	copper chaperone
1442	 42.65	+1	1444685..1444888	-	67	71904109	copZ	M28_Spy1447	-	copper chaperone
1443	 43.23	+1	1444902..1447133	-	743	71904110	copA	M28_Spy1448	-	copper-exporting ATPase
1444	 40.36	0	1447133..1447573	-	146	71904111	copY	M28_Spy1449	-	copAB ATPase metal-fist type repressor
1445	 36.33	0	1447733..1448734	+	333	71904112	-	M28_Spy1450	-	esterase
1446	 38.38	0	1448787..1449143	-	118	71904113	rbfA	M28_Spy1451	-	ribosome-binding factor A
1447	 40.85	0	1449343..1452204	-	953	71904114	infB	M28_Spy1452	-	translation initiation factor IF-2
1448	 36.63	0	1452224..1452526	-	100	71904115	-	M28_Spy1453	-	hypothetical protein
1449	 33.33	-1	1452519..1452818	-	99	71904116	-	M28_Spy1454	-	putative cytoplasmic protein
1450	 40.59	0	1452831..1453988	-	385	162139397	nusA	M28_Spy1455	-	transcription elongation factor NusA
1451	 37.06	0	1454163..1454699	-	178	71904118	-	M28_Spy1456	-	hypothetical protein
1452	 39.94	0	1454958..1455593	-	211	71904119	trmB	M28_Spy1457	-	tRNA (guanine-N(7))-methyltransferase
1453	 37.37	0	1455593..1456384	-	263	71904120	-	M28_Spy1458	-	phosphotransferase family protein
1454	 32.08	-1	1456448..1457482	-	344	71904121	-	M28_Spy1459	-	EcsB
1455	 36.50	0	1457485..1458210	-	241	71904122	-	M28_Spy1460	-	ABC-type transporter ATP-binding protein ecsA
1456	 41.43	0	1458282..1458701	+	139	71904123	hit	M28_Spy1461	-	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)
1457	 37.25	0	1458698..1459054	+	118	71904124	-	M28_Spy1462	-	hypothetical protein
1458	 38.08	0	1459165..1460448	-	427	71904125	lytR	M28_Spy1463	-	LytR family transcriptional regulator
1459	 36.00	0	1460457..1460981	-	174	71904126	-	M28_Spy1464	-	acetyltransferase
1460	 37.23	0	1460956..1461417	-	153	71904127	-	M28_Spy1465	-	ATP/GTP hydrolase
1461	 38.12	0	1461571..1463031	-	486	71904128	-	M28_Spy1466	-	guanine-hypoxanthine permease
1462	 39.36	0	1463295..1464107	+	270	71904129	-	M28_Spy1467	-	HAD superfamily hydrolase
1463	 41.29	0	1464459..1465451	+	330	71904130	manL	M28_Spy1468	-	PTS system, mannose-specific IIAB component
1464	 45.19	+1	1465540..1466349	+	269	71904131	manM	M28_Spy1469	-	PTS system, mannose-specific IIC component
1465	 43.42	+1	1466366..1467277	+	303	71904132	manN	M28_Spy1470	-	PTS system, mannose-specific IID component
1466	 35.00	0	1467391..1467750	+	119	71904133	manO	M28_Spy1471	-	putative cytoplasmic protein
1467	 42.25	+1	1468142..1469419	+	425	71904134	serS	M28_Spy1472	-	seryl-tRNA synthetase
1468	 41.89	0	1469652..1470422	-	256	71904135	accD	M28_Spy1473	-	acetyl-CoA carboxylase subunit alpha
1469	 41.98	0	1470419..1471285	-	288	71904136	accA	M28_Spy1474	-	acetyl-CoA carboxylase subunit beta
1470	 42.49	+1	1471294..1472658	-	454	162139396	accC	M28_Spy1475	-	acetyl-CoA carboxylase biotin carboxylase subunit
1471	 42.79	+1	1472690..1473112	-	140	71904138	fabZ	M28_Spy1476	-	(3R)-hydroxymyristoyl-ACP dehydratase
1472	 41.32	0	1473109..1473609	-	166	71904139	accB	M28_Spy1477	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1473	 41.85	0	1473611..1474843	-	410	71904140	fabF	M28_Spy1478	-	3-oxoacyl-(acyl carrier protein) synthase II
1474	 39.73	0	1474858..1475592	-	244	71904141	fabG	M28_Spy1479	-	3-ketoacyl-(acyl-carrier-protein) reductase
1475	 39.89	0	1475582..1476526	-	314	71904142	fabD	M28_Spy1480	-	acyl-carrier-protein S-malonyltransferase
1476	 41.05	0	1476545..1477516	-	323	71904143	fabK	M28_Spy1481	-	enoyl-[acyl-carrier protein] reductase (NADH)
1477	 31.56	-1	1477718..1477942	-	74	71904144	acpP	M28_Spy1482	-	acyl carrier protein
1478	 40.62	0	1478003..1478977	-	324	71904145	fabH	M28_Spy1483	-	3-oxoacyl-(acyl carrier protein) synthase III
1479	 37.97	0	1478978..1479430	-	150	71904146	-	M28_Spy1484	-	MarR family transcriptional regulator
1480	 39.65	0	1479489..1480280	-	263	71904147	phaB	M28_Spy1485	-	enoyl-CoA hydratase
1481	 42.74	+1	1480500..1481690	-	396	71904148	dnaJ	M28_Spy1486	-	chaperone protein
1482	 40.50	0	1481917..1483743	-	608	71904149	dnaK	M28_Spy1487	-	molecular chaperone DnaK
1483	 40.49	0	1483924..1484496	-	190	71904150	grpE	M28_Spy1488	-	hypothetical protein
1484	 37.68	0	1484499..1485533	-	344	71904151	hrcA	M28_Spy1489	-	heat-inducible transcription repressor
1485	 35.44	0	1485668..1486237	-	189	71904152	-	M28_Spy1490	-	N-acetylmuramoyl-L-alanine amidase
1486	 42.61	+1	1486234..1486977	-	247	71904153	-	M28_Spy1491	-	D-alanyl-D-alanine carboxypeptidase
1487	 40.11	0	1486967..1487674	-	235	71904154	-	M28_Spy1492	-	phosphoglycerate mutase
1488	 40.56	0	1488066..1488314	-	82	71904155	-	M28_Spy1493	-	hypothetical protein
1489	 35.65	0	1488524..1488739	-	71	71904156	-	M28_Spy1494	-	hypothetical protein
1490	 43.61	+1	1488736..1490175	-	479	71904157	gatB	M28_Spy1495	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1491	 43.63	+1	1490175..1491641	-	488	71904158	gatA	M28_Spy1496	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1492	 39.60	0	1491641..1491943	-	100	162139395	gatC	M28_Spy1497	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1493	 51.43	+2	1492175..1492384	-	69	71904160	-	M28_Spy1498	-	pyruvate, phosphate dikinase
1494	 41.30	0	1492356..1492493	-	45	71904161	-	M28_Spy1499	-	pyruvate, phosphate dikinase
1495	 36.20	0	1492937..1493494	-	185	71904162	-	M28_Spy1500	-	nicotinamidase
1496	 37.47	0	1493638..1494483	-	281	71904163	codY	M28_Spy1501	-	transcriptional repressor CodY
1497	 39.09	0	1494638..1495852	-	404	162139394	-	M28_Spy1502	-	aminotransferase AlaT
1498	 36.28	0	1495993..1496535	+	180	71904165	-	M28_Spy1503	-	universal stress protein
1499	 37.72	0	1496658..1498046	-	462	71904166	-	M28_Spy1504	-	HAD superfamily hydrolase
1500	 39.34	0	1498118..1499083	+	321	71904167	asnB	M28_Spy1505	-	L-asparaginase
1501	 30.92	-1	1499432..1500136	-	234	71904168	-	M28_Spy1506	-	hypothetical protein
1502	 34.95	0	1500149..1500334	-	61	71904169	-	M28_Spy1507	-	putative ATP transporter
1503	 35.65	0	1500363..1501052	-	229	71904170	-	M28_Spy1508	-	putative ATP transporter
1504	 36.95	0	1501345..1503360	-	671	71904171	recG	M28_Spy1509	-	ATP-dependent DNA helicase
1505	 34.04	-1	1503557..1503697	+	46	71904172	-	M28_Spy1510	-	hypothetical protein
1506	 38.69	0	1503735..1505189	-	484	71904173	-	M28_Spy1511	-	cobalt transport ATP-binding protein cbiO
1507	 36.56	0	1505126..1505806	-	226	71904174	-	M28_Spy1512	-	cobalt transport protein cbiQ
1508	 35.52	0	1505803..1506396	-	197	71904175	-	M28_Spy1513	-	permease
1509	 35.80	0	1506393..1508096	-	567	71904176	-	M28_Spy1514	-	ABC transporter ATP-binding protein
1510	 38.10	0	1508056..1509819	-	587	71904177	-	M28_Spy1515	-	ABC transporter ATP-binding protein
1511	 41.34	0	1509816..1510652	-	278	71904178	fhuC	M28_Spy1516	-	ferrichrome transport ATP-binding protein
1512	 41.24	0	1510649..1511698	-	349	71904179	-	M28_Spy1517	-	ferrichrome transport system permease protein fhuB
1513	 40.31	0	1511673..1512590	-	305	71904180	-	M28_Spy1518	-	ferrichrome-binding protein
1514	 36.30	0	1512541..1513416	-	291	71904181	shp	M28_Spy1519	-	putative heme binding protein
1515	 35.63	0	1513613..1517446	-	1277	71904182	-	M28_Spy1520	-	putative Fe3+-siderophore transport protein
1516	 40.81	0	1517930..1519441	-	503	71904183	isp2	M28_Spy1521	-	immunogenic secreted protein
1517	 39.60	0	1519528..1520628	-	366	71904184	alr	M28_Spy1522	-	alanine racemase
1518	 36.69	0	1520625..1520981	-	118	71904185	acpS	M28_Spy1523	-	4'-phosphopantetheinyl transferase
1519	 41.19	0	1521097..1523616	-	839	71904186	secA	M28_Spy1524	-	preprotein translocase subunit SecA
1520	 40.78	0	1523750..1524703	-	317	71904187	pmi	M28_Spy1525	-	mannose-6-phosphate isomerase
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.