IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1373	 38.56	0	1372986..1374344	-	452	71904040	sunL	M28_Spy1378	-	16S rRNA m(5)C 967 methyltransferase
1374	 38.46	0	1374298..1375233	-	311	71904041	fmt	M28_Spy1379	-	methionyl-tRNA formyltransferase
1375	 38.89	0	1375295..1377706	-	803	71904042	priA	M28_Spy1380	-	primosome assembly protein PriA
1376	 38.68	0	1377744..1378061	-	105	71904043	-	M28_Spy1381	-	DNA-directed RNA polymerase subunit omega
1377	 39.15	0	1378077..1378712	-	211	71904044	gmk	M28_Spy1382	-	guanylate kinase
1378	 41.67	0	1378822..1380429	-	535	71904045	-	M28_Spy1383	-	hypothetical protein
1379	 36.81	0	1380559..1381479	-	306	71904046	-	M28_Spy1384	-	LysR family transcriptional regulator
1380	 41.16	0	1381656..1382843	+	395	71904047	atoB	M28_Spy1385	-	acetyl-CoA acetyltransferase
1381	 40.87	0	1382855..1383517	+	220	71904048	atoD.1	M28_Spy1386	-	acetate CoA-transferase alpha subunit
1382	 41.52	0	1383519..1384178	+	219	71904049	atoA	M28_Spy1387	-	acetate CoA-transferase beta subunit
1383	 40.13	0	1384211..1384990	+	259	71904050	-	M28_Spy1388	-	3-hydroxybutyrate dehydrogenase
1384	 38.81	0	1385061..1386392	+	443	71904051	-	M28_Spy1389	-	D-beta-hydroxybutyrate permease
1385	 40.31	0	1386376..1386948	+	190	71904052	luxS	M28_Spy1390	-	S-ribosylhomocysteinase
1386	 40.82	0	1387094..1388563	-	489	71904053	-	M28_Spy1391	-	hypothetical protein
1387	 39.74	0	1388577..1389731	-	384	71904054	-	M28_Spy1392	-	methyltransferase
1388	 31.80	-1	1390176..1390502	-	108	71904055	-	M28_Spy1393	-	cell division initiation protein DivIVA
1389	 34.50	0	1390624..1391139	-	171	71904056	-	M28_Spy1394	-	hypothetical protein
1390	 36.12	0	1391220..1391828	+	202	71904057	recU	M28_Spy1395	-	Holliday junction-specific endonuclease
1391	 38.87	0	1391815..1393980	+	721	71904058	pbp1A	M28_Spy1396	-	multimodular transpeptidase-transglycosylase
1392	 39.46	0	1394444..1395781	-	445	71904059	pepC	M28_Spy1397	-	aminopeptidase C
1393	 41.75	0	1395966..1396832	-	288	71904060	nadE	M28_Spy1398	-	NAD synthetase
1394	 40.07	0	1396792..1398246	-	484	71904061	nadE	M28_Spy1399	-	nicotinate phosphoribosyltransferase
1395	 39.73	0	1398417..1399808	-	463	71904062	-	M28_Spy1400	-	amino acid permease
1396	 39.43	0	1399965..1400882	-	305	71904063	-	M28_Spy1401	-	thioredoxin reductase
1397	 29.78	-2	1400946..1401170	-	74	71904064	aapA	M28_Spy1402	-	hypothetical protein
1398	 39.76	0	1401274..1402020	-	248	71904065	-	M28_Spy1403	-	transporter
1399	 38.37	0	1402017..1402910	-	297	71904066	-	M28_Spy1404	-	amino acid ABC transporter permease protein
1400	 41.96	0	1403015..1404358	-	447	71904068	-	M28_Spy1406	-	ATP-dependent RNA helicase
1401	 34.67	0	1404357..1404506	+	49	71904067	-	M28_Spy1405	-	hypothetical protein
1402	 37.69	0	1404516..1405526	-	336	71904069	mraY	M28_Spy1407	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1403	 37.32	0	1405528..1407783	-	751	71904070	-	M28_Spy1408	-	cell division protein ftsI
1404	 33.90	-1	1407787..1408140	-	117	71904071	ftsL	M28_Spy1409	-	cell division protein
1405	 39.64	0	1408115..1409128	-	337	71904072	mraW	M28_Spy1410	-	S-adenosyl-methyltransferase MraW
1406	 35.76	0	1409152..1409316	-	54	71904073	-	M28_Spy1411	-	hypothetical protein
1407	 36.70	0	1409359..1409625	-	88	71904074	-	M28_Spy1412	-	hypothetical protein
1408	 42.61	+1	1409600..1410850	-	416	71904075	proA	M28_Spy1413	-	gamma-glutamyl phosphate reductase
1409	 39.49	0	1410843..1411670	-	275	71904076	-	M28_Spy1414	-	gamma-glutamyl kinase
1410	 38.36	0	1411728..1413398	-	556	71904077	proB	M28_Spy1415	-	ABC transporter permease protein
1411	 40.00	0	1413361..1414095	-	244	71904078	-	M28_Spy1416	-	ABC transporter ATP-binding protein
1412	 37.08	0	1414129..1414395	-	88	71904079	-	M28_Spy1417	-	hypothetical protein
1413	 44.81	+1	1414588..1416573	-	661	162139398	tkt	M28_Spy1418	-	transketolase
1414	 40.47	0	1416791..1417435	-	214	71904081	-	M28_Spy1419	-	putative translaldolase
1415	 40.13	0	1417561..1419120	-	519	71904082	-	M28_Spy1420	-	trans-acting positive regulator
1416	 41.25	0	1419050..1420489	-	479	71904083	-	M28_Spy1421	-	NADH peroxidase
1417	 46.01	+1	1420505..1421206	-	233	71904084	glpF	M28_Spy1422	-	glycerol uptake facilitator protein
1418	 42.69	+1	1421208..1423046	-	612	71904085	glpO	M28_Spy1423	-	alpha-glycerophosphate oxidase
1419	 42.31	+1	1423062..1424588	-	508	71904086	glpK	M28_Spy1424	-	glycerol kinase
1420	 35.10	0	1424948..1425400	-	150	71904087	-	M28_Spy1425	-	hypothetical protein
1421	 43.02	+1	1425467..1425724	-	85	71904088	-	M28_Spy1426	-	hypothetical protein
1422	 43.38	+1	1425878..1427917	-	679	71904089	glyS	M28_Spy1427	-	glycyl-tRNA synthetase subunit beta
1423	 43.03	+1	1428295..1429212	-	305	71904090	glyQ	M28_Spy1428	-	glycyl-tRNA synthetase subunit alpha
1424	 35.02	0	1429584..1430117	-	177	71904091	-	M28_Spy1429	-	hypothetical protein
1425	 41.28	0	1430249..1431091	-	280	71904092	-	M28_Spy1430	-	aldo/keto reductase
1426	 43.60	+1	1431210..1432358	-	382	71904093	nagA	M28_Spy1431	-	N-acetylglucosamine-6-phosphate deacetylase
1427	 38.73	0	1432475..1434124	-	549	71904094	-	M28_Spy1432	-	sodium-dependent phosphate transporter
1428	 39.97	0	1434308..1435030	+	240	71904095	-	M28_Spy1433	-	hypothetical protein
1429	 38.08	0	1435159..1436001	-	280	71904096	-	M28_Spy1434	-	degV family protein
1430	 36.19	0	1436291..1436851	+	186	71904097	-	M28_Spy1435	-	TetR family transcriptional regulator
1431	 41.95	0	1436887..1437768	-	293	71904098	-	M28_Spy1436	-	HAD superfamily hydrolase
1432	 42.23	0	1437713..1438330	-	205	71904099	-	M28_Spy1437	-	hypothetical protein
1433	 40.70	0	1438527..1439504	-	325	71904100	lacD.1	M28_Spy1438	-	tagatose 1,6-diphosphate aldolase
1434	 41.67	0	1439586..1439849	-	87	71904101	-	M28_Spy1439	-	tagatose-6-phosphate kinase
1435	 38.54	0	1440014..1440532	-	172	71904102	lacB.1	M28_Spy1440	-	galactose-6-phosphate isomerase subunit LacB
1436	 41.55	0	1440544..1440969	-	141	71904103	lacA.1	M28_Spy1441	-	galactose-6-phosphate isomerase subunit LacA
1437	 41.60	0	1441226..1442677	-	483	71904104	-	M28_Spy1442	-	PTS system, galactose-specific IIC component
1438	 42.16	0	1442703..1443008	-	101	71904105	-	M28_Spy1443	-	PTS system, galactose-specific IIB component
1439	 38.82	0	1443001..1443474	-	157	71904106	-	M28_Spy1444	-	PTS system, galactose-specific IIA component
1440	 36.19	0	1443711..1444481	+	256	71904107	lacR.1	M28_Spy1445	-	lactose phosphotransferase system repressor
1441	 41.52	0	1444508..1444678	-	56	71904108	-	M28_Spy1446	-	copper chaperone
1442	 42.65	+1	1444685..1444888	-	67	71904109	copZ	M28_Spy1447	-	copper chaperone
1443	 43.23	+1	1444902..1447133	-	743	71904110	copA	M28_Spy1448	-	copper-exporting ATPase
1444	 40.36	0	1447133..1447573	-	146	71904111	copY	M28_Spy1449	-	copAB ATPase metal-fist type repressor
1445	 36.33	0	1447733..1448734	+	333	71904112	-	M28_Spy1450	-	esterase
1446	 38.38	0	1448787..1449143	-	118	71904113	rbfA	M28_Spy1451	-	ribosome-binding factor A
1447	 40.85	0	1449343..1452204	-	953	71904114	infB	M28_Spy1452	-	translation initiation factor IF-2
1448	 36.63	0	1452224..1452526	-	100	71904115	-	M28_Spy1453	-	hypothetical protein
1449	 33.33	-1	1452519..1452818	-	99	71904116	-	M28_Spy1454	-	putative cytoplasmic protein
1450	 40.59	0	1452831..1453988	-	385	162139397	nusA	M28_Spy1455	-	transcription elongation factor NusA
1451	 37.06	0	1454163..1454699	-	178	71904118	-	M28_Spy1456	-	hypothetical protein
1452	 39.94	0	1454958..1455593	-	211	71904119	trmB	M28_Spy1457	-	tRNA (guanine-N(7))-methyltransferase
1453	 37.37	0	1455593..1456384	-	263	71904120	-	M28_Spy1458	-	phosphotransferase family protein
1454	 32.08	-1	1456448..1457482	-	344	71904121	-	M28_Spy1459	-	EcsB
1455	 36.50	0	1457485..1458210	-	241	71904122	-	M28_Spy1460	-	ABC-type transporter ATP-binding protein ecsA
1456	 41.43	0	1458282..1458701	+	139	71904123	hit	M28_Spy1461	-	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)
1457	 37.25	0	1458698..1459054	+	118	71904124	-	M28_Spy1462	-	hypothetical protein
1458	 38.08	0	1459165..1460448	-	427	71904125	lytR	M28_Spy1463	-	LytR family transcriptional regulator
1459	 36.00	0	1460457..1460981	-	174	71904126	-	M28_Spy1464	-	acetyltransferase
1460	 37.23	0	1460956..1461417	-	153	71904127	-	M28_Spy1465	-	ATP/GTP hydrolase
1461	 38.12	0	1461571..1463031	-	486	71904128	-	M28_Spy1466	-	guanine-hypoxanthine permease
1462	 39.36	0	1463295..1464107	+	270	71904129	-	M28_Spy1467	-	HAD superfamily hydrolase
1463	 41.29	0	1464459..1465451	+	330	71904130	manL	M28_Spy1468	-	PTS system, mannose-specific IIAB component
1464	 45.19	+1	1465540..1466349	+	269	71904131	manM	M28_Spy1469	-	PTS system, mannose-specific IIC component
1465	 43.42	+1	1466366..1467277	+	303	71904132	manN	M28_Spy1470	-	PTS system, mannose-specific IID component
1466	 35.00	0	1467391..1467750	+	119	71904133	manO	M28_Spy1471	-	putative cytoplasmic protein
1467	 42.25	+1	1468142..1469419	+	425	71904134	serS	M28_Spy1472	-	seryl-tRNA synthetase
1468	 41.89	0	1469652..1470422	-	256	71904135	accD	M28_Spy1473	-	acetyl-CoA carboxylase subunit alpha
1469	 41.98	0	1470419..1471285	-	288	71904136	accA	M28_Spy1474	-	acetyl-CoA carboxylase subunit beta
1470	 42.49	+1	1471294..1472658	-	454	162139396	accC	M28_Spy1475	-	acetyl-CoA carboxylase biotin carboxylase subunit
1471	 42.79	+1	1472690..1473112	-	140	71904138	fabZ	M28_Spy1476	-	(3R)-hydroxymyristoyl-ACP dehydratase
1472	 41.32	0	1473109..1473609	-	166	71904139	accB	M28_Spy1477	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.