IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1341	 38.99	0	1331386..1332870	-	494	71904008	-	M28_Spy1346	-	two-component response regulator
1342	 40.57	0	1332870..1334597	-	575	71904009	-	M28_Spy1347	-	two-component sensor kinase
1343	 36.80	0	1334584..1335189	-	201	71904010	-	M28_Spy1348	-	hypothetical protein
1344	 39.28	0	1335495..1336940	-	481	71904011	-	M28_Spy1349	-	sugar-binding protein
1345	 39.81	0	1337021..1337947	-	308	71904012	-	M28_Spy1350	-	sugar transport system permease protein
1346	 37.84	0	1337957..1338955	-	332	71904013	-	M28_Spy1351	-	sugar transport system permease protein
1347	 44.26	+1	1339058..1339981	+	307	71904014	-	M28_Spy1352	-	glucokinase
1348	 41.46	0	1340124..1340246	+	40	71904015	-	M28_Spy1353	-	hypothetical protein
1349	 44.84	+1	1340592..1342034	-	480	71904016	-	M28_Spy1354	-	beta-glucosidase
1350	 41.83	0	1342059..1343753	-	564	71904017	hyl	M28_Spy1355	-	hyaluronoglucosaminidase
1351	 41.21	0	1343804..1344844	-	346	71904018	-	M28_Spy1356	-	GntR family transcriptional regulator
1352	 43.84	+1	1344950..1346263	+	437	71904019	-	M28_Spy1357	-	hypothetical protein
1353	 44.16	+1	1346278..1348983	+	901	71904020	-	M28_Spy1358	-	alpha-mannosidase
1354	 32.30	-1	1349084..1350439	-	451	71904021	rocA	M28_Spy1359	-	sensory transduction protein kinase
1355	 41.96	0	1351104..1352459	-	451	71904022	-	M28_Spy1360	-	tRNA (uracil-5-)-methyltransferase
1356	 35.39	0	1352574..1353350	+	258	71904023	recX	M28_Spy1361	-	recombination regulator RecX
1357	 36.33	0	1353430..1353963	+	177	71904024	-	M28_Spy1362	-	hypothetical protein
1358	 42.67	+1	1354062..1354211	-	49	71904025	-	M28_Spy1363	-	hypothetical protein
1359	 37.28	0	1354333..1354611	+	92	71904026	-	M28_Spy1364	-	transposase
1360	 29.33	-2	1360866..1361090	+	74	71904027	-	M28_Spy1365	-	hypothetical protein
1361	 35.34	0	1361684..1362232	-	182	71904028	-	M28_Spy1366	-	ribosome-associated factor Y
1362	 32.58	-1	1362312..1362977	-	221	71904029	comFC	M28_Spy1367	-	ComF operon protein 3
1363	 36.27	0	1362949..1364274	-	441	71904030	comFA	M28_Spy1368	-	ComF operon protein 1
1364	 35.03	0	1364315..1364962	+	215	71904031	-	M28_Spy1369	-	Xaa-Pro dipeptidase
1365	 39.28	0	1365090..1366031	+	313	71904032	cysM	M28_Spy1370	-	cysteine synthase
1366	 38.10	0	1366049..1366426	-	125	71904033	-	M28_Spy1371	-	hypothetical protein
1367	 40.55	0	1366426..1367838	-	470	71904034	-	M28_Spy1372	-	peptidyl-prolyl cis-trans isomerase
1368	 39.51	0	1367863..1368510	-	215	71904035	yvqC	M28_Spy1373	-	two-component response regulator
1369	 34.53	0	1368497..1369501	-	334	71904036	yvqE	M28_Spy1374	-	two-component sensor protein
1370	 31.18	-1	1369498..1370241	-	247	71904037	yvqF	M28_Spy1375	-	transporter
1371	 39.97	0	1370313..1372211	-	632	71904038	-	M28_Spy1376	-	serine/threonine protein kinase
1372	 38.73	0	1372208..1372948	-	246	71904039	pppL	M28_Spy1377	-	protein phosphatase 2C
1373	 38.56	0	1372986..1374344	-	452	71904040	sunL	M28_Spy1378	-	16S rRNA m(5)C 967 methyltransferase
1374	 38.46	0	1374298..1375233	-	311	71904041	fmt	M28_Spy1379	-	methionyl-tRNA formyltransferase
1375	 38.89	0	1375295..1377706	-	803	71904042	priA	M28_Spy1380	-	primosome assembly protein PriA
1376	 38.68	0	1377744..1378061	-	105	71904043	-	M28_Spy1381	-	DNA-directed RNA polymerase subunit omega
1377	 39.15	0	1378077..1378712	-	211	71904044	gmk	M28_Spy1382	-	guanylate kinase
1378	 41.67	0	1378822..1380429	-	535	71904045	-	M28_Spy1383	-	hypothetical protein
1379	 36.81	0	1380559..1381479	-	306	71904046	-	M28_Spy1384	-	LysR family transcriptional regulator
1380	 41.16	0	1381656..1382843	+	395	71904047	atoB	M28_Spy1385	-	acetyl-CoA acetyltransferase
1381	 40.87	0	1382855..1383517	+	220	71904048	atoD.1	M28_Spy1386	-	acetate CoA-transferase alpha subunit
1382	 41.52	0	1383519..1384178	+	219	71904049	atoA	M28_Spy1387	-	acetate CoA-transferase beta subunit
1383	 40.13	0	1384211..1384990	+	259	71904050	-	M28_Spy1388	-	3-hydroxybutyrate dehydrogenase
1384	 38.81	0	1385061..1386392	+	443	71904051	-	M28_Spy1389	-	D-beta-hydroxybutyrate permease
1385	 40.31	0	1386376..1386948	+	190	71904052	luxS	M28_Spy1390	-	S-ribosylhomocysteinase
1386	 40.82	0	1387094..1388563	-	489	71904053	-	M28_Spy1391	-	hypothetical protein
1387	 39.74	0	1388577..1389731	-	384	71904054	-	M28_Spy1392	-	methyltransferase
1388	 31.80	-1	1390176..1390502	-	108	71904055	-	M28_Spy1393	-	cell division initiation protein DivIVA
1389	 34.50	0	1390624..1391139	-	171	71904056	-	M28_Spy1394	-	hypothetical protein
1390	 36.12	0	1391220..1391828	+	202	71904057	recU	M28_Spy1395	-	Holliday junction-specific endonuclease
1391	 38.87	0	1391815..1393980	+	721	71904058	pbp1A	M28_Spy1396	-	multimodular transpeptidase-transglycosylase
1392	 39.46	0	1394444..1395781	-	445	71904059	pepC	M28_Spy1397	-	aminopeptidase C
1393	 41.75	0	1395966..1396832	-	288	71904060	nadE	M28_Spy1398	-	NAD synthetase
1394	 40.07	0	1396792..1398246	-	484	71904061	nadE	M28_Spy1399	-	nicotinate phosphoribosyltransferase
1395	 39.73	0	1398417..1399808	-	463	71904062	-	M28_Spy1400	-	amino acid permease
1396	 39.43	0	1399965..1400882	-	305	71904063	-	M28_Spy1401	-	thioredoxin reductase
1397	 29.78	-2	1400946..1401170	-	74	71904064	aapA	M28_Spy1402	-	hypothetical protein
1398	 39.76	0	1401274..1402020	-	248	71904065	-	M28_Spy1403	-	transporter
1399	 38.37	0	1402017..1402910	-	297	71904066	-	M28_Spy1404	-	amino acid ABC transporter permease protein
1400	 41.96	0	1403015..1404358	-	447	71904068	-	M28_Spy1406	-	ATP-dependent RNA helicase
1401	 34.67	0	1404357..1404506	+	49	71904067	-	M28_Spy1405	-	hypothetical protein
1402	 37.69	0	1404516..1405526	-	336	71904069	mraY	M28_Spy1407	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1403	 37.32	0	1405528..1407783	-	751	71904070	-	M28_Spy1408	-	cell division protein ftsI
1404	 33.90	-1	1407787..1408140	-	117	71904071	ftsL	M28_Spy1409	-	cell division protein
1405	 39.64	0	1408115..1409128	-	337	71904072	mraW	M28_Spy1410	-	S-adenosyl-methyltransferase MraW
1406	 35.76	0	1409152..1409316	-	54	71904073	-	M28_Spy1411	-	hypothetical protein
1407	 36.70	0	1409359..1409625	-	88	71904074	-	M28_Spy1412	-	hypothetical protein
1408	 42.61	+1	1409600..1410850	-	416	71904075	proA	M28_Spy1413	-	gamma-glutamyl phosphate reductase
1409	 39.49	0	1410843..1411670	-	275	71904076	-	M28_Spy1414	-	gamma-glutamyl kinase
1410	 38.36	0	1411728..1413398	-	556	71904077	proB	M28_Spy1415	-	ABC transporter permease protein
1411	 40.00	0	1413361..1414095	-	244	71904078	-	M28_Spy1416	-	ABC transporter ATP-binding protein
1412	 37.08	0	1414129..1414395	-	88	71904079	-	M28_Spy1417	-	hypothetical protein
1413	 44.81	+1	1414588..1416573	-	661	162139398	tkt	M28_Spy1418	-	transketolase
1414	 40.47	0	1416791..1417435	-	214	71904081	-	M28_Spy1419	-	putative translaldolase
1415	 40.13	0	1417561..1419120	-	519	71904082	-	M28_Spy1420	-	trans-acting positive regulator
1416	 41.25	0	1419050..1420489	-	479	71904083	-	M28_Spy1421	-	NADH peroxidase
1417	 46.01	+1	1420505..1421206	-	233	71904084	glpF	M28_Spy1422	-	glycerol uptake facilitator protein
1418	 42.69	+1	1421208..1423046	-	612	71904085	glpO	M28_Spy1423	-	alpha-glycerophosphate oxidase
1419	 42.31	+1	1423062..1424588	-	508	71904086	glpK	M28_Spy1424	-	glycerol kinase
1420	 35.10	0	1424948..1425400	-	150	71904087	-	M28_Spy1425	-	hypothetical protein
1421	 43.02	+1	1425467..1425724	-	85	71904088	-	M28_Spy1426	-	hypothetical protein
1422	 43.38	+1	1425878..1427917	-	679	71904089	glyS	M28_Spy1427	-	glycyl-tRNA synthetase subunit beta
1423	 43.03	+1	1428295..1429212	-	305	71904090	glyQ	M28_Spy1428	-	glycyl-tRNA synthetase subunit alpha
1424	 35.02	0	1429584..1430117	-	177	71904091	-	M28_Spy1429	-	hypothetical protein
1425	 41.28	0	1430249..1431091	-	280	71904092	-	M28_Spy1430	-	aldo/keto reductase
1426	 43.60	+1	1431210..1432358	-	382	71904093	nagA	M28_Spy1431	-	N-acetylglucosamine-6-phosphate deacetylase
1427	 38.73	0	1432475..1434124	-	549	71904094	-	M28_Spy1432	-	sodium-dependent phosphate transporter
1428	 39.97	0	1434308..1435030	+	240	71904095	-	M28_Spy1433	-	hypothetical protein
1429	 38.08	0	1435159..1436001	-	280	71904096	-	M28_Spy1434	-	degV family protein
1430	 36.19	0	1436291..1436851	+	186	71904097	-	M28_Spy1435	-	TetR family transcriptional regulator
1431	 41.95	0	1436887..1437768	-	293	71904098	-	M28_Spy1436	-	HAD superfamily hydrolase
1432	 42.23	0	1437713..1438330	-	205	71904099	-	M28_Spy1437	-	hypothetical protein
1433	 40.70	0	1438527..1439504	-	325	71904100	lacD.1	M28_Spy1438	-	tagatose 1,6-diphosphate aldolase
1434	 41.67	0	1439586..1439849	-	87	71904101	-	M28_Spy1439	-	tagatose-6-phosphate kinase
1435	 38.54	0	1440014..1440532	-	172	71904102	lacB.1	M28_Spy1440	-	galactose-6-phosphate isomerase subunit LacB
1436	 41.55	0	1440544..1440969	-	141	71904103	lacA.1	M28_Spy1441	-	galactose-6-phosphate isomerase subunit LacA
1437	 41.60	0	1441226..1442677	-	483	71904104	-	M28_Spy1442	-	PTS system, galactose-specific IIC component
1438	 42.16	0	1442703..1443008	-	101	71904105	-	M28_Spy1443	-	PTS system, galactose-specific IIB component
1439	 38.82	0	1443001..1443474	-	157	71904106	-	M28_Spy1444	-	PTS system, galactose-specific IIA component
1440	 36.19	0	1443711..1444481	+	256	71904107	lacR.1	M28_Spy1445	-	lactose phosphotransferase system repressor
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.