IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1299	 29.13	-2	1287623..1287955	-	110	71903966	-	M28_Spy1304	-	hypothetical protein
1300	 23.20	-2	1288122..1288664	-	180	71903967	-	M28_Spy1305	-	hypothetical protein
1301	 39.90	0	1288887..1289648	-	253	71903968	-	M28_Spy1306	-	putative cell surface protein
1302	 33.51	-1	1289673..1290230	-	185	71903969	-	M28_Spy1307	-	hypothetical protein
1303	 40.77	0	1290230..1291588	-	452	71903970	-	M28_Spy1308	-	hypothetical protein
1304	 37.50	0	1291723..1291866	+	47	71903971	-	M28_Spy1309	-	hypothetical protein
1305	 33.46	-1	1292034..1294349	-	771	71903972	-	M28_Spy1310	-	membrane protein
1306	 35.61	0	1294364..1296865	-	833	71903973	-	M28_Spy1311	-	DNA segregation ATPase related protein
1307	 32.36	-1	1296886..1297296	-	136	71903974	-	M28_Spy1312	-	hypothetical protein
1308	 35.56	0	1297299..1297568	-	89	71903975	-	M28_Spy1313	-	hypothetical protein
1309	 32.39	-1	1297587..1298537	-	316	71903976	-	M28_Spy1314	-	hypothetical protein
1310	 32.29	-1	1298538..1299017	-	159	71903977	-	M28_Spy1315	-	hypothetical protein
1311	 36.51	0	1299025..1299276	-	83	71903978	-	M28_Spy1316	-	hypothetical protein
1312	 33.81	-1	1299306..1299515	-	69	71903979	-	M28_Spy1317	-	hypothetical protein
1313	 34.07	-1	1299559..1299831	-	90	71903980	-	M28_Spy1318	-	hypothetical protein
1314	 34.03	-1	1300026..1300169	-	47	71903981	-	M28_Spy1319	-	Cro/CI family transcriptional regulator
1315	 28.31	-2	1300220..1300597	-	125	71903982	-	M28_Spy1320	-	hypothetical protein
1316	 31.16	-1	1300598..1301839	-	413	71903983	-	M28_Spy1321	-	Cro/CI family transcriptional regulator
1317	 32.34	-1	1302151..1303860	-	569	71903984	-	M28_Spy1322	-	FtsK/SpoIIIE family protein
1318	 34.43	0	1303880..1304335	-	151	71903985	-	M28_Spy1323	-	hypothetical protein
1319	 37.91	0	1304338..1304643	-	101	71903986	-	M28_Spy1324	-	hypothetical protein
1320	 41.93	0	1304905..1308963	-	1352	71903987	-	M28_Spy1325	-	putative cell surface protein
1321	 41.19	0	1309133..1311373	-	746	71903988	-	M28_Spy1326	-	putative cell surface protein
1322	 28.50	-2	1311466..1311858	-	130	71903989	-	M28_Spy1327	-	hypothetical protein
1323	 31.52	-1	1311982..1312422	-	146	71903990	-	M28_Spy1328	-	hypothetical protein
1324	 31.49	-1	1312580..1313014	-	144	71903991	-	M28_Spy1329	-	Cro/CI family transcriptional regulator
1325	 28.42	-2	1313889..1314275	+	128	71903992	-	M28_Spy1330	-	Cro/CI family transcriptional regulator
1326	 27.66	-2	1314282..1314704	+	140	71903993	-	M28_Spy1331	-	hypothetical protein
1327	 28.29	-2	1314769..1315125	-	118	71903994	-	M28_Spy1332	-	hypothetical protein
1328	 28.61	-2	1315128..1315466	-	112	71903995	-	M28_Spy1333	-	hypothetical protein
1329	 29.59	-2	1315463..1315756	-	97	71903996	-	M28_Spy1334	-	hypothetical protein
1330	 35.48	0	1315777..1315962	+	61	71903997	-	M28_Spy1335	-	transposase
1331	 40.57	0	1316468..1320961	-	1497	71903998	-	M28_Spy1336	-	R28 protein
1332	 31.09	-1	1321190..1322395	+	401	71903999	-	M28_Spy1337	-	AraC family transcriptional regulator
1333	 41.17	0	1322913..1323665	+	250	71904000	-	M28_Spy1338	-	3-deoxy-7-phosphoheptulonate synthase
1334	 42.15	0	1323706..1324794	+	362	71904001	aroB	M28_Spy1339	-	3-dehydroquinate synthase
1335	 37.11	0	1325063..1325221	-	52	71904002	-	M28_Spy1340	-	hypothetical protein
1336	 38.24	0	1325229..1325534	-	101	71904003	-	M28_Spy1341	-	putative cytoplasmic protein
1337	 40.71	0	1325536..1325874	-	112	71904004	-	M28_Spy1342	-	putative cytoplasmic protein
1338	 41.40	0	1325927..1326682	-	251	71904005	-	M28_Spy1343	-	SAM-dependent methyltransferase
1339	 45.96	+1	1326934..1327812	-	292	71904006	aroE	M28_Spy1344	-	shikimate 5-dehydrogenase
1340	 44.03	+1	1327950..1331456	-	1168	71904007	lacZ	M28_Spy1345	-	beta-galactosidase
1341	 38.99	0	1331386..1332870	-	494	71904008	-	M28_Spy1346	-	two-component response regulator
1342	 40.57	0	1332870..1334597	-	575	71904009	-	M28_Spy1347	-	two-component sensor kinase
1343	 36.80	0	1334584..1335189	-	201	71904010	-	M28_Spy1348	-	hypothetical protein
1344	 39.28	0	1335495..1336940	-	481	71904011	-	M28_Spy1349	-	sugar-binding protein
1345	 39.81	0	1337021..1337947	-	308	71904012	-	M28_Spy1350	-	sugar transport system permease protein
1346	 37.84	0	1337957..1338955	-	332	71904013	-	M28_Spy1351	-	sugar transport system permease protein
1347	 44.26	+1	1339058..1339981	+	307	71904014	-	M28_Spy1352	-	glucokinase
1348	 41.46	0	1340124..1340246	+	40	71904015	-	M28_Spy1353	-	hypothetical protein
1349	 44.84	+1	1340592..1342034	-	480	71904016	-	M28_Spy1354	-	beta-glucosidase
1350	 41.83	0	1342059..1343753	-	564	71904017	hyl	M28_Spy1355	-	hyaluronoglucosaminidase
1351	 41.21	0	1343804..1344844	-	346	71904018	-	M28_Spy1356	-	GntR family transcriptional regulator
1352	 43.84	+1	1344950..1346263	+	437	71904019	-	M28_Spy1357	-	hypothetical protein
1353	 44.16	+1	1346278..1348983	+	901	71904020	-	M28_Spy1358	-	alpha-mannosidase
1354	 32.30	-1	1349084..1350439	-	451	71904021	rocA	M28_Spy1359	-	sensory transduction protein kinase
1355	 41.96	0	1351104..1352459	-	451	71904022	-	M28_Spy1360	-	tRNA (uracil-5-)-methyltransferase
1356	 35.39	0	1352574..1353350	+	258	71904023	recX	M28_Spy1361	-	recombination regulator RecX
1357	 36.33	0	1353430..1353963	+	177	71904024	-	M28_Spy1362	-	hypothetical protein
1358	 42.67	+1	1354062..1354211	-	49	71904025	-	M28_Spy1363	-	hypothetical protein
1359	 37.28	0	1354333..1354611	+	92	71904026	-	M28_Spy1364	-	transposase
1360	 29.33	-2	1360866..1361090	+	74	71904027	-	M28_Spy1365	-	hypothetical protein
1361	 35.34	0	1361684..1362232	-	182	71904028	-	M28_Spy1366	-	ribosome-associated factor Y
1362	 32.58	-1	1362312..1362977	-	221	71904029	comFC	M28_Spy1367	-	ComF operon protein 3
1363	 36.27	0	1362949..1364274	-	441	71904030	comFA	M28_Spy1368	-	ComF operon protein 1
1364	 35.03	0	1364315..1364962	+	215	71904031	-	M28_Spy1369	-	Xaa-Pro dipeptidase
1365	 39.28	0	1365090..1366031	+	313	71904032	cysM	M28_Spy1370	-	cysteine synthase
1366	 38.10	0	1366049..1366426	-	125	71904033	-	M28_Spy1371	-	hypothetical protein
1367	 40.55	0	1366426..1367838	-	470	71904034	-	M28_Spy1372	-	peptidyl-prolyl cis-trans isomerase
1368	 39.51	0	1367863..1368510	-	215	71904035	yvqC	M28_Spy1373	-	two-component response regulator
1369	 34.53	0	1368497..1369501	-	334	71904036	yvqE	M28_Spy1374	-	two-component sensor protein
1370	 31.18	-1	1369498..1370241	-	247	71904037	yvqF	M28_Spy1375	-	transporter
1371	 39.97	0	1370313..1372211	-	632	71904038	-	M28_Spy1376	-	serine/threonine protein kinase
1372	 38.73	0	1372208..1372948	-	246	71904039	pppL	M28_Spy1377	-	protein phosphatase 2C
1373	 38.56	0	1372986..1374344	-	452	71904040	sunL	M28_Spy1378	-	16S rRNA m(5)C 967 methyltransferase
1374	 38.46	0	1374298..1375233	-	311	71904041	fmt	M28_Spy1379	-	methionyl-tRNA formyltransferase
1375	 38.89	0	1375295..1377706	-	803	71904042	priA	M28_Spy1380	-	primosome assembly protein PriA
1376	 38.68	0	1377744..1378061	-	105	71904043	-	M28_Spy1381	-	DNA-directed RNA polymerase subunit omega
1377	 39.15	0	1378077..1378712	-	211	71904044	gmk	M28_Spy1382	-	guanylate kinase
1378	 41.67	0	1378822..1380429	-	535	71904045	-	M28_Spy1383	-	hypothetical protein
1379	 36.81	0	1380559..1381479	-	306	71904046	-	M28_Spy1384	-	LysR family transcriptional regulator
1380	 41.16	0	1381656..1382843	+	395	71904047	atoB	M28_Spy1385	-	acetyl-CoA acetyltransferase
1381	 40.87	0	1382855..1383517	+	220	71904048	atoD.1	M28_Spy1386	-	acetate CoA-transferase alpha subunit
1382	 41.52	0	1383519..1384178	+	219	71904049	atoA	M28_Spy1387	-	acetate CoA-transferase beta subunit
1383	 40.13	0	1384211..1384990	+	259	71904050	-	M28_Spy1388	-	3-hydroxybutyrate dehydrogenase
1384	 38.81	0	1385061..1386392	+	443	71904051	-	M28_Spy1389	-	D-beta-hydroxybutyrate permease
1385	 40.31	0	1386376..1386948	+	190	71904052	luxS	M28_Spy1390	-	S-ribosylhomocysteinase
1386	 40.82	0	1387094..1388563	-	489	71904053	-	M28_Spy1391	-	hypothetical protein
1387	 39.74	0	1388577..1389731	-	384	71904054	-	M28_Spy1392	-	methyltransferase
1388	 31.80	-1	1390176..1390502	-	108	71904055	-	M28_Spy1393	-	cell division initiation protein DivIVA
1389	 34.50	0	1390624..1391139	-	171	71904056	-	M28_Spy1394	-	hypothetical protein
1390	 36.12	0	1391220..1391828	+	202	71904057	recU	M28_Spy1395	-	Holliday junction-specific endonuclease
1391	 38.87	0	1391815..1393980	+	721	71904058	pbp1A	M28_Spy1396	-	multimodular transpeptidase-transglycosylase
1392	 39.46	0	1394444..1395781	-	445	71904059	pepC	M28_Spy1397	-	aminopeptidase C
1393	 41.75	0	1395966..1396832	-	288	71904060	nadE	M28_Spy1398	-	NAD synthetase
1394	 40.07	0	1396792..1398246	-	484	71904061	nadE	M28_Spy1399	-	nicotinate phosphoribosyltransferase
1395	 39.73	0	1398417..1399808	-	463	71904062	-	M28_Spy1400	-	amino acid permease
1396	 39.43	0	1399965..1400882	-	305	71904063	-	M28_Spy1401	-	thioredoxin reductase
1397	 29.78	-2	1400946..1401170	-	74	71904064	aapA	M28_Spy1402	-	hypothetical protein
1398	 39.76	0	1401274..1402020	-	248	71904065	-	M28_Spy1403	-	transporter
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.