IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1080	 28.98	-2	1084615..1085142	-	175	71903747	-	M28_Spy1082	-	hypothetical protein
1081	 26.67	-2	1085573..1086802	-	409	71903748	-	M28_Spy1083	-	nickase
1082	 24.24	-2	1087527..1087856	-	109	71903749	-	M28_Spy1084	-	hypothetical protein
1083	 30.52	-1	1088343..1088768	-	141	71903750	-	M28_Spy1085	-	MarR family transcriptional regulator
1084	 25.43	-2	1089612..1089902	-	96	71903751	-	M28_Spy1086	-	hypothetical protein
1085	 27.99	-2	1090007..1090624	-	205	71903752	-	M28_Spy1087	-	putative cytoplasmic protein
1086	 26.48	-2	1090692..1091114	-	140	71903753	-	M28_Spy1088	-	hypothetical protein
1087	 29.24	-2	1091134..1091670	-	178	71903754	-	M28_Spy1089	-	putative cytoplasmic protein
1088	 39.57	0	1091826..1093493	-	555	71903755	-	M28_Spy1090	-	tRNA (uracil-5-)-methyltransferase
1089	 38.22	0	1093542..1094993	-	483	71903756	-	M28_Spy1091	-	LytR family transcriptional regulator
1090	 34.15	-1	1095201..1095692	-	163	71903757	aroK	M28_Spy1092	-	shikimate kinase
1091	 41.20	0	1095685..1096968	-	427	71903758	-	M28_Spy1093	-	3-phosphoshikimate 1-carboxyvinyltransferase
1092	 34.37	0	1097079..1098044	-	321	71903759	-	M28_Spy1094	-	ribonuclease BN
1093	 41.81	0	1098046..1098906	-	286	71903760	map	M28_Spy1095	-	methionine aminopeptidase
1094	 35.26	0	1098922..1100217	-	431	71903761	-	M28_Spy1096	-	CBS domain-containing cytosolic protein
1095	 33.15	-1	1100214..1100756	-	180	71903762	-	M28_Spy1097	-	ribosomal-protein-alanine acetyltransferase
1096	 41.33	0	1100994..1101731	-	245	71903763	grab	M28_Spy1098	-	protein G-related alpha 2M-binding protein
1097	 41.27	0	1102089..1103348	-	419	71903764	murZ	M28_Spy1099	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1098	 42.69	+1	1103522..1104718	-	398	71903765	metK2	M28_Spy1100	-	S-adenosylmethionine synthetase
1099	 38.50	0	1105254..1107632	-	792	71903766	inlA	M28_Spy1101	-	internalin protein
1100	 40.98	0	1107836..1108777	+	313	71903767	birA	M28_Spy1102	-	biotin--protein ligase
1101	 33.72	-1	1108752..1109012	-	86	71903768	-	M28_Spy1103	-	hypothetical protein
1102	 38.15	0	1109097..1110239	-	380	71903769	-	M28_Spy1104	-	transposase
1103	 41.46	0	1110500..1112185	-	561	71903770	-	M28_Spy1105	-	DNA polymerase III subunits gamma and tau
1104	 39.54	0	1112185..1112748	-	187	71903771	-	M28_Spy1106	-	GAF domain-containing protein
1105	 34.57	0	1112827..1113636	+	269	71903772	-	M28_Spy1107	-	hypothetical protein
1106	 31.44	-1	1113689..1113952	-	87	71903773	-	M28_Spy1108	-	hypothetical protein
1107	 36.93	0	1114032..1114670	-	212	71903774	udk	M28_Spy1109	-	uridine kinase
1108	 38.78	0	1114723..1115841	+	372	71903775	deaD2	M28_Spy1110	-	ATP-dependent RNA helicase
1109	 33.49	-1	1115951..1117225	-	424	71903776	-	M28_Spy1111	-	peptidoglycan N-acetylglucosamine deacetylase
1110	 41.60	0	1117320..1118747	-	475	71903777	gapN	M28_Spy1112	-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
1111	 43.08	+1	1118932..1120665	-	577	71903778	pstI	M28_Spy1113	-	phosphoenolpyruvate-protein phosphotransferase
1112	 40.91	0	1120670..1120933	-	87	71903779	ptsH	M28_Spy1114	-	phosphocarrier protein HPr
1113	 34.52	0	1121293..1121544	+	83	71903780	nrdH	M28_Spy1115	-	glutaredoxin
1114	 37.59	0	1121564..1123723	+	719	71903781	nrdE.2	M28_Spy1116	-	ribonucleotide-diphosphate reductase subunit alpha
1115	 42.86	+1	1123805..1123930	-	41	71903782	-	M28_Spy1117	-	hypothetical protein
1116	 36.04	0	1124056..1125015	+	319	71903783	nrdF	M28_Spy1118	-	ribonucleotide-diphosphate reductase subunit beta
1117	 41.32	0	1124990..1126303	+	437	71903784	-	M28_Spy1119	-	chloride channel protein
1118	 35.92	0	1127649..1128344	-	231	71903785	-	M28_Spy1123	-	CAAX amino protease
1119	 36.48	0	1128363..1129124	-	253	71903786	-	M28_Spy1124	-	hypothetical protein
1120	 42.86	+1	1129121..1129351	-	76	71903787	-	M28_Spy1125	-	Cro/CI family transcriptional regulator
1121	 42.31	+1	1129697..1132315	-	872	71903788	alaS	M28_Spy1126	-	alanyl-tRNA synthetase
1122	 36.17	0	1132702..1133757	-	351	71903789	prsA	M28_Spy1127	-	foldase protein PrsA
1123	 38.42	0	1133820..1134527	-	235	71903790	-	M28_Spy1128	-	O-methyltransferase
1124	 36.26	0	1134593..1135789	-	398	71903791	-	M28_Spy1129	-	oxalate/formate antiporter
1125	 38.98	0	1136165..1137970	-	601	71903792	pepB	M28_Spy1130	-	oligoendopeptidase F
1126	 37.38	0	1137983..1138945	-	320	71903793	-	M28_Spy1131	-	putative competence protein/transcription factor
1127	 41.56	0	1139240..1139956	-	238	71903794	-	M28_Spy1132	-	ribosomal small subunit pseudouridine synthase A
1128	 37.80	0	1140075..1140902	-	275	71903795	nagB	M28_Spy1133	-	glucosamine-6-phosphate isomerase
1129	 42.76	+1	1140981..1142009	+	342	71903796	queA	M28_Spy1134	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1130	 38.17	0	1142016..1143236	+	406	71903797	-	M28_Spy1135	-	putative cytoplasmic protein
1131	 39.42	0	1143350..1143940	-	196	71903798	-	M28_Spy1136	-	hypothetical protein
1132	 42.17	0	1143937..1144185	-	82	71903799	-	M28_Spy1137	-	hypothetical protein
1133	 38.46	0	1144241..1144396	-	51	71903800	-	M28_Spy1138	-	hypothetical protein
1134	 39.60	0	1144563..1145168	-	201	71903801	sodA	M28_Spy1139	-	superoxide dismutase
1135	 36.79	0	1145264..1146304	-	346	71903802	holA	M28_Spy1140	-	DNA polymerase III subunit delta
1136	 39.90	0	1146375..1148261	-	628	71903803	comEC.1	M28_Spy1141	-	ComE operon protein 3
1137	 36.67	0	1148258..1148617	-	119	71903804	comEC.2	M28_Spy1142	-	ComE operon protein 3
1138	 37.41	0	1148598..1149260	-	220	71903805	comEA	M28_Spy1143	-	ComE operon protein 1
1139	 40.54	0	1149459..1150277	-	272	71903807	-	M28_Spy1145	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1140	 38.95	0	1150239..1151093	+	284	71903806	-	M28_Spy1144	-	methyltransferase
1141	 36.56	0	1151083..1151361	+	92	71903808	-	M28_Spy1146	-	hypothetical protein
1142	 40.03	0	1151385..1153385	-	666	71903809	-	M28_Spy1147	-	kup system potassium uptake protein
1143	 41.79	0	1153512..1155131	-	539	71903810	deaD	M28_Spy1148	-	ATP-dependent RNA helicase
1144	 40.00	0	1155438..1156982	-	514	71903811	prfC	M28_Spy1149	-	peptide chain release factor 3
1145	 36.35	0	1157230..1157925	-	231	71903812	-	M28_Spy1150	-	hypothetical protein
1146	 39.37	0	1158005..1159396	-	463	71903813	murF	M28_Spy1151	-	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase
1147	 39.64	0	1159595..1160641	-	348	71903814	ddl	M28_Spy1152	-	D-alanyl-alanine synthetase A
1148	 41.04	0	1160742..1161338	-	198	71903815	recR	M28_Spy1153	-	recombination protein RecR
1149	 35.94	0	1161385..1161576	-	63	71903816	-	M28_Spy1154	-	penicillin-binding protein
1150	 37.64	0	1162136..1163017	-	293	71903817	-	M28_Spy1155	-	formate transporter
1151	 35.73	0	1163039..1163581	-	180	71903818	-	M28_Spy1156	-	hypothetical protein
1152	 34.87	0	1163742..1164263	-	173	71903819	-	M28_Spy1157	-	biotin repressor family transcriptional regulator
1153	 41.38	0	1164370..1165065	-	231	71903820	gpmA	M28_Spy1158	-	phosphoglyceromutase
1154	 41.56	0	1165292..1166239	+	315	71903821	pyrD	M28_Spy1159	-	dihydroorotate dehydrogenase 1A
1155	 29.89	-2	1166294..1166467	-	57	71903822	-	M28_Spy1160	-	hypothetical protein
1156	 40.42	0	1166539..1168401	-	620	71903823	-	M28_Spy1161	-	lead, cadmium, zinc and mercury transporting ATPase
1157	 40.58	0	1168755..1169030	-	91	71903824	-	M28_Spy1162	-	DNA-binding protein HU
1158	 32.14	-1	1169129..1169716	-	195	71903825	-	M28_Spy1163	-	hypothetical protein
1159	 32.87	-1	1169694..1170554	-	286	71903826	-	M28_Spy1164	-	lipase/acylhydrolase
1160	 37.91	0	1170529..1171380	-	283	71903827	-	M28_Spy1165	-	DegV family protein
1161	 36.52	0	1171596..1172537	-	313	71903828	-	M28_Spy1166	-	hypothetical protein
1162	 39.52	0	1172709..1174373	-	554	71903829	recN	M28_Spy1167	-	DNA repair protein
1163	 35.12	0	1174392..1174895	-	167	71903830	argR1	M28_Spy1168	-	arginine repressor
1164	 42.75	+1	1174849..1175676	-	275	71903831	-	M28_Spy1169	-	hemolysin
1165	 41.01	0	1175669..1176541	-	290	71903832	fps	M28_Spy1170	-	dimethylallyltransferase
1166	 34.72	0	1176541..1176756	-	71	71903833	xseB	M28_Spy1171	-	exodeoxyribonuclease VII small subunit
1167	 42.40	+1	1176734..1178089	-	451	71903834	xseA	M28_Spy1172	-	exodeoxyribonuclease VII large subunit
1168	 39.95	0	1178227..1179087	-	286	71903835	folD	M28_Spy1173	-	methenyltetrahydrofolate cyclohydrolase
1169	 37.73	0	1179289..1180992	-	567	71903836	-	M28_Spy1174	-	phosphoglucomutase
1170	 37.38	0	1181161..1182594	-	477	71903837	phr	M28_Spy1175	-	deoxyribodipyrimidine photolyase
1171	 40.79	0	1182719..1183456	-	245	71903838	artP	M28_Spy1176	-	arginine transport ATP-binding protein
1172	 39.74	0	1183453..1184139	-	228	71903839	artQ	M28_Spy1177	-	arginine transport system permease protein
1173	 38.53	0	1184266..1184496	-	76	71903840	-	M28_Spy1178	-	putative cytoplasmic protein
1174	 40.91	0	1184794..1187076	+	760	71903841	clpE	M28_Spy1179	-	ATP-dependent Clp protease ATP-binding subunit
1175	 39.25	0	1187204..1187659	+	151	71903842	mutT	M28_Spy1180	-	mutator protein (7,8-dihydro-8-oxoguanine-triphosphatase)
1176	 33.66	-1	1187710..1188012	+	100	71903843	-	M28_Spy1181	-	putative cytoplasmic protein
1177	 41.76	0	1188277..1191078	-	933	71903844	ileS	M28_Spy1182	-	isoleucyl-tRNA synthetase
1178	 36.89	0	1191351..1192109	-	252	71903845	divIVAS	M28_Spy1183	-	cell division initiation protein DivIVA
1179	 31.44	-1	1192119..1192910	-	263	71903846	-	M28_Spy1184	-	RNA binding protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.