IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
992	 30.65	-1	1007054..1007239	-	61	71903659	-	M28_Spy0994	-	phage protein
993	 37.04	0	1007243..1008805	-	520	71903660	-	M28_Spy0995	-	phage protein
994	 41.85	0	1008786..1010288	-	500	71903661	-	M28_Spy0996	-	portal protein
995	 37.21	0	1010300..1011613	-	437	71903662	-	M28_Spy0997	-	terminase large subunit
996	 38.46	0	1011585..1012130	-	181	71903663	-	M28_Spy0998	-	phage terminase small subunit
997	 37.41	0	1012313..1012729	+	138	71903664	-	M28_Spy0999	-	phage protein
998	 28.63	-2	1013347..1014261	-	304	71903665	-	M28_Spy1000	-	phage protein
999	 42.79	+1	1014312..1014533	-	73	71903666	-	M28_Spy1001	-	phage protein
1000	 40.69	0	1014839..1015273	-	144	71903667	-	M28_Spy1002	-	ArpU family phage encoded transcriptional regulator
1001	 32.53	-1	1015722..1016216	-	164	71903668	-	M28_Spy1003	-	phage protein
1002	 37.48	0	1016206..1016904	-	232	71903669	-	M28_Spy1004	-	phage protein
1003	 40.00	0	1016840..1017124	-	94	71903670	-	M28_Spy1005	-	phage protein
1004	 37.95	0	1017121..1017315	-	64	71903671	-	M28_Spy1006	-	phage protein
1005	 36.25	0	1017288..1017527	-	79	71903672	-	M28_Spy1007	-	phage protein
1006	 34.96	0	1017524..1017769	-	81	71903673	-	M28_Spy1008	-	phage protein
1007	 37.54	0	1017766..1018122	-	118	71903674	-	M28_Spy1009	-	phage protein
1008	 38.25	0	1018106..1018390	-	94	71903675	-	M28_Spy1010	-	phage protein
1009	 34.13	-1	1018410..1019291	-	293	71903676	-	M28_Spy1011	-	phage protein
1010	 34.43	0	1019548..1021101	-	517	71903677	-	M28_Spy1012	-	phage protein
1011	 38.51	0	1021119..1021601	-	160	71903678	-	M28_Spy1013	-	phage protein
1012	 36.11	0	1021606..1022973	-	455	71903679	-	M28_Spy1014	-	phage DNA/RNA helicase
1013	 38.60	0	1023045..1023728	-	227	71903680	-	M28_Spy1015	-	phage protein
1014	 29.12	-2	1023725..1024009	-	94	71903681	-	M28_Spy1016	-	phage protein
1015	 31.28	-1	1024006..1024200	-	64	71903682	-	M28_Spy1017	-	phage protein
1016	 32.12	-1	1024200..1024529	-	109	71903683	-	M28_Spy1018	-	phage protein
1017	 36.96	0	1024610..1024747	-	45	71903684	-	M28_Spy1019	-	phage protein
1018	 37.37	0	1024744..1025040	-	98	71903685	-	M28_Spy1020	-	phage protein
1019	 32.85	-1	1025119..1025325	-	68	71903686	-	M28_Spy1021	-	phage protein
1020	 34.17	-1	1025471..1025710	+	79	71903687	-	M28_Spy1022	-	phage protein
1021	 32.38	-1	1025860..1026069	+	69	71903688	-	M28_Spy1023	-	phage protein
1022	 30.32	-1	1026274..1026837	+	187	71903689	-	M28_Spy1024	-	phage protein
1023	 28.07	-2	1026945..1027172	-	75	71903691	-	M28_Spy1026	-	phage protein
1024	 33.53	-1	1027135..1027632	+	165	71903690	-	M28_Spy1025	-	phage protein
1025	 35.24	0	1027621..1027830	-	69	71903692	-	M28_Spy1027	-	phage protein
1026	 31.67	-1	1027884..1028483	+	199	71903693	-	M28_Spy1028	-	phage protein
1027	 38.99	0	1028513..1028671	-	52	71903694	-	M28_Spy1029	-	phage protein
1028	 35.89	0	1029438..1030181	+	247	71903695	-	M28_Spy1030	-	phage transcriptional repressor
1029	 34.57	0	1030194..1031003	+	269	71903696	-	M28_Spy1031	-	phage protein
1030	 39.87	0	1031060..1031212	-	50	71903697	-	M28_Spy1032	-	phage protein
1031	 33.51	-1	1031217..1032341	+	374	71903698	-	M28_Spy1033	-	DNA integration/recombination/invertion protein
1032	 35.96	0	1032473..1032586	+	37	71903699	-	M28_Spy1034	-	hypothetical protein
1033	 36.39	0	1032704..1033324	+	206	71903700	-	M28_Spy1035	-	hypothetical protein
1034	 38.01	0	1033581..1035845	-	754	71903701	glgP	M28_Spy1036	-	glycogen phosphorylase
1035	 37.22	0	1035880..1037373	-	497	71903702	malM	M28_Spy1037	-	4-alpha-glucanotransferase
1036	 32.69	-1	1037489..1038583	-	364	71903703	malR	M28_Spy1038	-	LacI family transcription regulator
1037	 38.94	0	1038751..1039998	+	415	71903704	malE	M28_Spy1039	-	maltose/maltodextrin-binding protein
1038	 37.00	0	1040272..1041633	+	453	71903705	malF	M28_Spy1040	-	maltose transport system permease protein
1039	 36.20	0	1041633..1042469	+	278	71903706	malG	M28_Spy1041	-	maltose transport system permease protein
1040	 38.95	0	1042624..1043424	+	266	71903707	-	M28_Spy1042	-	LacI family transcription regulator
1041	 40.56	0	1043540..1044355	-	271	71903708	malA	M28_Spy1043	-	maltodextrose utilization protein
1042	 39.61	0	1044377..1045237	-	286	71903709	malD	M28_Spy1044	-	maltodextrin transport system permease protein
1043	 38.69	0	1045234..1046541	-	435	71903710	malC	M28_Spy1045	-	maltose transport system permease protein
1044	 36.03	0	1046616..1048802	-	728	71903711	amyA	M28_Spy1046	-	alpha-amylase
1045	 38.29	0	1048777..1050492	-	571	71903712	amyB	M28_Spy1047	-	cyclomaltodextrinase
1046	 38.27	0	1050646..1051941	-	431	71903713	malX	M28_Spy1048	-	maltose/maltodextrin-binding protein
1047	 32.44	-1	1052225..1052449	+	74	71903714	-	M28_Spy1049	-	transposase
1048	 36.08	0	1052514..1053497	-	327	71903715	-	M28_Spy1050	-	esterase
1049	 35.89	0	1053528..1054778	-	416	71903716	dltD	M28_Spy1051	-	protein precursor
1050	 36.25	0	1054771..1055010	-	79	71903717	-	M28_Spy1052	-	D-alanine--poly(phosphoribitol) ligase subunit 2
1051	 37.23	0	1055028..1056284	-	418	71903718	-	M28_Spy1053	-	hypothetical protein
1052	 40.48	0	1056281..1057819	-	512	71903719	dltA	M28_Spy1054	-	D-alanine--D-alanyl carrier protein ligase
1053	 26.39	-2	1057831..1057974	-	47	71903720	-	M28_Spy1055	-	hypothetical protein
1054	 39.41	0	1058238..1060229	-	663	71903721	uvrB	M28_Spy1056	-	excinuclease ABC subunit B
1055	 37.98	0	1060421..1062595	+	724	71903722	glnH	M28_Spy1057	-	transporter
1056	 41.30	0	1062595..1063335	+	246	71903723	glnQ.2	M28_Spy1058	-	glutamine transport ATP-binding protein
1057	 37.91	0	1063483..1063635	-	50	71903724	-	M28_Spy1059	-	hypothetical protein
1058	 40.22	0	1063632..1065011	-	459	71903725	-	M28_Spy1060	-	PTS system, cellobiose-specific IIC component
1059	 38.89	0	1065189..1065638	-	149	71903726	-	M28_Spy1061	-	hypothetical protein
1060	 44.94	+1	1065635..1065970	-	111	71903727	-	M28_Spy1062	-	PTS system, cellobiose-specific IIA component
1061	 38.60	0	1065973..1066314	-	113	71903728	-	M28_Spy1063	-	PTS system, cellobiose-specific IIB component
1062	 38.40	0	1066307..1068301	-	664	71903729	-	M28_Spy1064	-	PTS system, mannitol (cryptic)-specific IIA component
1063	 41.37	0	1068407..1069501	-	364	71903730	-	M28_Spy1065	-	outer surface protein
1064	 40.91	0	1069510..1070934	-	474	71903731	bglA.2	M28_Spy1066	-	beta-glucosidase
1065	 37.85	0	1071123..1071830	+	235	71903732	-	M28_Spy1067	-	nicotinamide mononucleotide transporter
1066	 35.22	0	1071835..1071993	-	52	71903733	-	M28_Spy1068	-	putative cytoplasmic protein
1067	 44.42	+1	1072062..1073369	-	435	162139399	obgE	M28_Spy1069	-	GTPase ObgE
1068	 40.31	0	1073432..1073560	-	42	71903735	-	M28_Spy1070	-	hypothetical protein
1069	 36.33	0	1073784..1074317	+	177	71903736	-	M28_Spy1071	-	transposase
1070	 40.02	0	1074338..1075144	+	268	71903737	-	M28_Spy1072	-	transposase
1071	 43.27	+1	1075193..1075927	-	244	71903738	rsuA	M28_Spy1073	-	ribosomal small subunit pseudouridine synthase A
1072	 43.17	+1	1076039..1076404	+	121	71903739	-	M28_Spy1074	-	hypothetical protein
1073	 42.10	0	1076524..1077744	-	406	71903740	-	M28_Spy1075	-	major facilitator transporter
1074	 39.88	0	1078046..1079602	+	518	71903741	-	M28_Spy1076	-	hypothetical protein
1075	 41.04	0	1079707..1080108	-	133	71903742	-	M28_Spy1077	-	thioesterase superfamily protein
1076	 43.08	+1	1080193..1080705	-	170	71903743	-	M28_Spy1078	-	phosphorylase Pnp/Udp family protein
1077	 34.11	-1	1081126..1082805	-	559	71903744	-	M28_Spy1079	-	site-specific recombinase
1078	 36.42	0	1082902..1083063	-	53	71903745	-	M28_Spy1080	-	hypothetical protein
1079	 31.28	-1	1083761..1084489	-	242	71903746	-	M28_Spy1081	-	putative phage-associated protein
1080	 28.98	-2	1084615..1085142	-	175	71903747	-	M28_Spy1082	-	hypothetical protein
1081	 26.67	-2	1085573..1086802	-	409	71903748	-	M28_Spy1083	-	nickase
1082	 24.24	-2	1087527..1087856	-	109	71903749	-	M28_Spy1084	-	hypothetical protein
1083	 30.52	-1	1088343..1088768	-	141	71903750	-	M28_Spy1085	-	MarR family transcriptional regulator
1084	 25.43	-2	1089612..1089902	-	96	71903751	-	M28_Spy1086	-	hypothetical protein
1085	 27.99	-2	1090007..1090624	-	205	71903752	-	M28_Spy1087	-	putative cytoplasmic protein
1086	 26.48	-2	1090692..1091114	-	140	71903753	-	M28_Spy1088	-	hypothetical protein
1087	 29.24	-2	1091134..1091670	-	178	71903754	-	M28_Spy1089	-	putative cytoplasmic protein
1088	 39.57	0	1091826..1093493	-	555	71903755	-	M28_Spy1090	-	tRNA (uracil-5-)-methyltransferase
1089	 38.22	0	1093542..1094993	-	483	71903756	-	M28_Spy1091	-	LytR family transcriptional regulator
1090	 34.15	-1	1095201..1095692	-	163	71903757	aroK	M28_Spy1092	-	shikimate kinase
1091	 41.20	0	1095685..1096968	-	427	71903758	-	M28_Spy1093	-	3-phosphoshikimate 1-carboxyvinyltransferase
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.