IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
946	 38.29	0	998901..1000655	-	584	21910482	-	SpyM3_0946	-	hypothetical protein
947	 37.61	0	1000670..1001137	-	155	21910483	-	SpyM3_0947	-	hypothetical protein
948	 38.94	0	1001309..1001647	-	112	21910484	-	SpyM3_0948	-	hypothetical protein
949	 46.73	+2	1001644..1001949	-	101	21910485	-	SpyM3_0949	-	hypothetical protein
950	 37.64	0	1002233..1002673	-	146	21910486	-	SpyM3_0950	-	hypothetical protein
951	 36.16	0	1002946..1003581	-	211	21910487	-	SpyM3_0951	-	hypothetical protein
952	 34.08	-1	1003581..1003982	-	133	21910488	-	SpyM3_0952	-	hypothetical protein
953	 37.07	0	1004173..1004547	-	124	21910489	-	SpyM3_0953	-	putative DNA methyltransferase - phage associated
954	 37.75	0	1004853..1005056	-	67	21910490	-	SpyM3_0954	-	hypothetical protein
955	 39.25	0	1005040..1005360	-	106	21910491	-	SpyM3_0955	-	hypothetical protein
956	 31.88	-1	1005357..1005770	-	137	21910492	-	SpyM3_0956	-	hypothetical protein
957	 38.72	0	1006032..1006904	-	290	21910493	-	SpyM3_0957	-	putative DNA primase - phage associated
958	 36.76	0	1006952..1007506	-	184	21910494	-	SpyM3_0958	-	putative DNA primase - phage associated
959	 38.56	0	1007496..1008299	-	267	21910495	-	SpyM3_0959	-	hypothetical protein
960	 34.42	-1	1008311..1008769	-	152	21910496	-	SpyM3_0960	-	hypothetical protein
961	 39.02	0	1008785..1010014	-	409	21910497	-	SpyM3_0961	-	DEAD box family helicase
962	 36.27	0	1010116..1010796	-	226	21910498	-	SpyM3_0962	-	hypothetical protein
963	 33.13	-1	1010797..1011279	-	160	21910499	-	SpyM3_0963	-	hypothetical protein
964	 34.60	-1	1011508..1011822	-	104	21910500	-	SpyM3_0964	-	hypothetical protein
965	 31.85	-1	1011838..1011972	-	44	21910501	-	SpyM3_0965	-	hypothetical protein
966	 38.05	0	1011969..1012265	-	98	21910502	-	SpyM3_0966	-	hypothetical protein
967	 33.33	-1	1012343..1012528	-	61	21910503	-	SpyM3_0967	-	hypothetical protein
968	 33.75	-1	1012695..1012934	+	79	21910504	-	SpyM3_0968	-	hypothetical protein
969	 32.38	-1	1013085..1013294	+	69	21910505	-	SpyM3_0969	-	hypothetical protein
970	 39.02	0	1013253..1013498	-	81	21910506	-	SpyM3_0970	-	hypothetical protein
971	 29.17	-2	1013510..1013749	-	79	21910507	-	SpyM3_0971	-	hypothetical protein
972	 31.78	-1	1013823..1014209	+	128	21910508	-	SpyM3_0972	-	hypothetical protein
973	 34.30	-1	1014198..1014404	-	68	21910509	-	SpyM3_0973	-	hypothetical protein
974	 33.97	-1	1014461..1015240	+	259	21910510	-	SpyM3_0974	-	hypothetical protein
975	 30.30	-2	1015176..1015340	-	54	21910511	-	SpyM3_0975	-	hypothetical protein
976	 37.41	0	1015374..1015520	-	48	21910512	-	SpyM3_0976	-	hypothetical protein
977	 35.49	0	1015882..1016670	+	262	21910513	-	SpyM3_0977	-	putative repressor protein - phage associated
978	 33.43	-1	1017105..1018193	+	362	21910514	intP	SpyM3_0978	-	putative integrase - phage associated
979	 36.23	0	1018556..1019176	+	206	21910515	-	SpyM3_0979	-	hypothetical protein
980	 37.88	0	1019433..1021697	-	754	21910516	glgP	SpyM3_0980	-	putative glycogen (maltodextrin) phosphorylase
981	 37.15	0	1021732..1023225	-	497	21910517	malQ	SpyM3_0981	-	putative 4-alpha-glucanotransferase
982	 32.75	-1	1023340..1024359	-	339	21910518	malR	SpyM3_0982	-	putative maltose operon transcriptional repressor
983	 39.02	0	1024603..1025850	+	415	21910519	malE	SpyM3_0983	-	putative maltose/maltodextrin-binding protein
984	 37.08	0	1026124..1027485	+	453	21910520	malF	SpyM3_0984	-	putative maltose/maltodextrin ABC transport system (permease)
985	 35.96	0	1027485..1028321	+	278	21910521	malG	SpyM3_0985	-	putative maltose/maltodextrin ABC transport system (permease)
986	 37.04	0	1028323..1028484	-	53	21910522	-	SpyM3_0986	-	hypothetical protein
987	 40.24	0	1028508..1028753	+	81	21910523	-	SpyM3_0987	-	putative transposase N-terminal portion
988	 40.65	0	1028695..1029282	+	195	21910524	-	SpyM3_0988	-	putative transposase carboxy terminal portion
989	 41.11	0	1029251..1029430	-	59	21910525	-	SpyM3_0989	-	hypothetical protein
990	 35.98	0	1029797..1030780	-	327	21910526	-	SpyM3_0990	-	putative esterase
991	 35.81	0	1030811..1032061	-	416	21910527	dltD	SpyM3_0991	-	putative secreted protein DltD
992	 36.25	0	1032054..1032293	-	79	21910528	dltC	SpyM3_0992	-	D-alanine--poly(phosphoribitol) ligase subunit 2
993	 37.15	0	1032311..1033567	-	418	21910529	dltB	SpyM3_0993	-	putative dltB protein, D-alanine transfer from Dcp to undecaprenol-phosphate
994	 40.29	0	1033564..1035102	-	512	21910530	dltA	SpyM3_0994	-	D-alanine--D-alanyl carrier protein ligase
995	 26.39	-2	1035114..1035257	-	47	21910531	-	SpyM3_0995	-	hypothetical protein
996	 39.41	0	1035521..1037512	-	663	21910532	uvrB	SpyM3_0996	-	excinuclease ABC subunit B
997	 38.02	0	1037705..1039879	+	724	21910533	glnP	SpyM3_0997	-	putative glutamine ABC transporter, glutamine-binding protein/permease protein
998	 40.76	0	1039879..1040619	+	246	21910534	glnQ	SpyM3_0998	-	putative ABC transporter ATP-binding protein - glutamine transport
999	 37.91	0	1040767..1040919	-	50	21910535	-	SpyM3_0999	-	hypothetical protein
1000	 40.14	0	1040916..1042295	-	459	21910536	-	SpyM3_1000	-	putative PTS system IIC component
1001	 38.67	0	1042473..1042922	-	149	21910537	-	SpyM3_1001	-	hypothetical protein
1002	 44.05	+1	1042919..1043254	-	111	21910538	-	SpyM3_1002	-	PTS system, cellobiose-specific IIA component
1003	 38.78	0	1043257..1043568	-	103	21910539	-	SpyM3_1003	-	PTS system, cellobiose-specific IIB component
1004	 40.00	0	1043591..1043800	-	69	21910540	-	SpyM3_1004	-	putative transcriptional antiterminator
1005	 38.45	0	1043710..1045584	-	624	21910541	-	SpyM3_1005	-	putative transcriptional antiterminator
1006	 41.64	0	1045690..1046784	-	364	21910542	-	SpyM3_1006	-	outer surface protein
1007	 40.76	0	1046793..1048193	-	466	21910543	bglA.2	SpyM3_1007	-	putative beta-glucosidase
1008	 37.64	0	1048418..1049113	+	231	21910544	-	SpyM3_1008	-	hypothetical protein
1009	 35.22	0	1049118..1049276	-	52	21910545	-	SpyM3_1009	-	hypothetical protein
1010	 44.27	+1	1049345..1050652	-	435	21910546	obgE	SpyM3_1010	-	GTPase ObgE
1011	 37.18	0	1051135..1051602	+	155	21910547	-	SpyM3_1011	-	putative transposase associated protein
1012	 39.53	0	1051623..1052429	+	268	21910548	-	SpyM3_1012	-	putative transposase - IS861
1013	 42.15	0	1052729..1053601	-	290	21910549	nadC	SpyM3_1013	-	nicotinate-nucleotide pyrophosphorylase
1014	 43.40	+1	1053825..1055135	+	436	21910550	-	SpyM3_1014	-	putative integral membrane protein
1015	 36.99	0	1055213..1055458	+	81	21910551	-	SpyM3_1015	-	hypothetical protein
1016	 37.71	0	1055538..1055834	+	98	21910552	-	SpyM3_1016	-	IS1076 transposase
1017	 39.20	0	1055937..1056260	+	107	21910553	-	SpyM3_1017	-	putative transposase - IS904A
1018	 43.44	+1	1056277..1057008	-	243	21910554	rsuA	SpyM3_1018	-	putative 16S pseudouridylate synthase
1019	 42.90	+1	1057123..1057488	+	121	21910555	-	SpyM3_1019	-	hypothetical protein
1020	 42.01	0	1057608..1058828	-	406	21910556	-	SpyM3_1020	-	hypothetical protein
1021	 40.47	0	1059202..1060686	+	494	21910557	-	SpyM3_1021	-	hypothetical protein
1022	 40.80	0	1060791..1061192	-	133	21910558	-	SpyM3_1022	-	hypothetical protein
1023	 43.12	+1	1061277..1061756	-	159	21910559	-	SpyM3_1023	-	putative phosphorylase
1024	 41.79	0	1062097..1063326	-	409	21910560	-	SpyM3_1024	-	TrmA family RNA methyltransferase
1025	 38.02	0	1063534..1064985	-	483	21910561	psr	SpyM3_1025	-	putative transcriptional repressor
1026	 34.15	-1	1065193..1065684	-	163	21910562	aroK	SpyM3_1026	-	shikimate kinase
1027	 41.53	0	1065677..1066969	-	430	21910563	aroA.1	SpyM3_1027	-	3-phosphoshikimate 1-carboxyvinyltransferase
1028	 34.37	-1	1067071..1068036	-	321	21910564	-	SpyM3_1028	-	hypothetical protein
1029	 42.04	0	1068038..1068898	-	286	21910565	map	SpyM3_1029	-	methionine aminopeptidase
1030	 35.28	0	1068913..1070196	-	427	21910566	-	SpyM3_1030	-	hypothetical protein
1031	 33.15	-1	1070205..1070747	-	180	21910567	-	SpyM3_1031	-	putative acetyl transferase
1032	 42.53	+1	1070985..1071974	-	329	21910568	grab	SpyM3_1032	-	protein G-related alpha 2M-bindingprotein
1033	 41.43	0	1072331..1073590	-	419	161485741	murZ	SpyM3_1033	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1034	 42.77	+1	1073764..1074960	-	398	21910570	metK	SpyM3_1034	-	S-adenosylmethionine synthetase
1035	 38.38	0	1075497..1077875	-	792	21910571	inlA	SpyM3_1035	-	putative internalin A precursor
1036	 40.98	0	1078079..1079020	+	313	21910572	birA	SpyM3_1036	-	biotin--protein ligase
1037	 34.39	-1	1078995..1079279	-	94	21910573	-	SpyM3_1037	-	hypothetical protein
1038	 40.75	0	1079283..1080953	-	556	21910574	dnaX	SpyM3_1038	-	DNA polymerase III subunits gamma and tau
1039	 39.72	0	1080953..1081516	-	187	21910575	-	SpyM3_1039	-	hypothetical protein
1040	 34.57	-1	1081595..1082404	+	269	21910576	-	SpyM3_1040	-	hypothetical protein
1041	 31.44	-1	1082457..1082720	-	87	21910577	-	SpyM3_1041	-	hypothetical protein
1042	 37.16	0	1082800..1083426	-	208	21910578	udk	SpyM3_1042	-	uridine kinase
1043	 39.23	0	1083524..1084609	+	361	21910579	deaD.2	SpyM3_1043	-	ATP-dependent RNA helicase
1044	 33.49	-1	1084719..1085993	-	424	21910580	-	SpyM3_1044	-	putative peptidoglycan GlcNAc deacetylase
1045	 41.95	0	1086088..1087491	-	467	21910581	gapN	SpyM3_1045	-	putative NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.