IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
914	 37.64	0	970942..974052	-	1036	21910450	dnaE	SpyM3_0914	-	DNA polymerase III DnaE
915	 37.37	0	974237..974608	+	123	21910451	-	SpyM3_0915	-	GntR family transcriptional regulator
916	 35.19	0	974608..975306	+	232	21910452	-	SpyM3_0916	-	ABC transporter ATP-binding protein
917	 31.42	-1	975316..976101	+	261	21910453	-	SpyM3_0917	-	ABC transporter permease
918	 32.52	-1	976232..976846	-	204	21910454	-	SpyM3_0918	-	hypothetical protein
919	 40.21	0	977437..977625	-	62	21910455	-	SpyM3_0919	-	hypothetical protein
920	 31.16	-1	977738..978520	-	260	21910456	ssa	SpyM3_0920	-	streptococcal superantigen SSA - phage associated
921	 36.18	0	978733..979857	-	374	21910457	-	SpyM3_0921	-	hypothetical protein
922	 44.67	+1	979995..981203	-	402	21910458	-	SpyM3_0922	-	putative cell wall hydrolase - phage associated
923	 39.04	0	981319..981546	-	75	21910459	-	SpyM3_0923	-	putative holin - phage associated
924	 34.78	-1	981543..981818	-	91	21910460	-	SpyM3_0924	-	hypothetical protein
925	 42.72	+1	981828..982445	-	205	21910461	-	SpyM3_0925	-	hypothetical protein
926	 35.19	0	982448..982879	-	143	21910462	-	SpyM3_0926	-	hypothetical protein
927	 44.48	+1	982891..984774	-	627	21910463	-	SpyM3_0927	-	hypothetical protein
928	 43.90	+1	984859..984981	-	40	21910464	-	SpyM3_0928	-	hyaluronidase C-terminal portion - phage associated
929	 44.44	+1	985021..985803	-	260	21910465	hylP.2	SpyM3_0929	-	hyaluronidase N-terminal portion - phage associated
930	 41.83	0	985800..987776	-	658	21910466	-	SpyM3_0930	-	hypothetical protein
931	 42.09	0	987941..988648	-	235	21910467	-	SpyM3_0931	-	hypothetical protein
932	 41.95	0	988648..992571	-	1307	21910468	-	SpyM3_0932	-	hypothetical protein
933	 36.90	0	992584..992751	-	55	21910469	-	SpyM3_0933	-	hypothetical protein
934	 36.39	0	992781..993107	-	108	21910470	-	SpyM3_0934	-	hypothetical protein
935	 41.83	0	993160..993771	-	203	21910471	-	SpyM3_0935	-	hypothetical protein
936	 34.98	0	993790..994215	-	141	21910472	-	SpyM3_0936	-	hypothetical protein
937	 40.21	0	994212..994589	-	125	21910473	-	SpyM3_0937	-	hypothetical protein
938	 34.51	-1	994586..994924	-	112	21910474	-	SpyM3_0938	-	hypothetical protein
939	 37.62	0	994921..995223	-	100	21910475	-	SpyM3_0939	-	hypothetical protein
940	 38.76	0	995226..995354	-	42	21910476	-	SpyM3_0940	-	hypothetical protein
941	 37.55	0	995368..996552	-	394	21910477	-	SpyM3_0941	-	hypothetical protein
942	 38.44	0	996578..997243	-	221	21910478	clpP.2	SpyM3_0942	-	putative ClpP protease ATP-dependent protease proteolytic subunit - phage associated
943	 39.89	0	997221..998441	-	406	21910479	-	SpyM3_0943	-	hypothetical protein
944	 36.70	0	998475..998741	-	88	21910480	-	SpyM3_0944	-	hypothetical protein
945	 30.99	-2	998734..998904	-	56	21910481	-	SpyM3_0945	-	hypothetical protein
946	 38.29	0	998901..1000655	-	584	21910482	-	SpyM3_0946	-	hypothetical protein
947	 37.61	0	1000670..1001137	-	155	21910483	-	SpyM3_0947	-	hypothetical protein
948	 38.94	0	1001309..1001647	-	112	21910484	-	SpyM3_0948	-	hypothetical protein
949	 46.73	+2	1001644..1001949	-	101	21910485	-	SpyM3_0949	-	hypothetical protein
950	 37.64	0	1002233..1002673	-	146	21910486	-	SpyM3_0950	-	hypothetical protein
951	 36.16	0	1002946..1003581	-	211	21910487	-	SpyM3_0951	-	hypothetical protein
952	 34.08	-1	1003581..1003982	-	133	21910488	-	SpyM3_0952	-	hypothetical protein
953	 37.07	0	1004173..1004547	-	124	21910489	-	SpyM3_0953	-	putative DNA methyltransferase - phage associated
954	 37.75	0	1004853..1005056	-	67	21910490	-	SpyM3_0954	-	hypothetical protein
955	 39.25	0	1005040..1005360	-	106	21910491	-	SpyM3_0955	-	hypothetical protein
956	 31.88	-1	1005357..1005770	-	137	21910492	-	SpyM3_0956	-	hypothetical protein
957	 38.72	0	1006032..1006904	-	290	21910493	-	SpyM3_0957	-	putative DNA primase - phage associated
958	 36.76	0	1006952..1007506	-	184	21910494	-	SpyM3_0958	-	putative DNA primase - phage associated
959	 38.56	0	1007496..1008299	-	267	21910495	-	SpyM3_0959	-	hypothetical protein
960	 34.42	-1	1008311..1008769	-	152	21910496	-	SpyM3_0960	-	hypothetical protein
961	 39.02	0	1008785..1010014	-	409	21910497	-	SpyM3_0961	-	DEAD box family helicase
962	 36.27	0	1010116..1010796	-	226	21910498	-	SpyM3_0962	-	hypothetical protein
963	 33.13	-1	1010797..1011279	-	160	21910499	-	SpyM3_0963	-	hypothetical protein
964	 34.60	-1	1011508..1011822	-	104	21910500	-	SpyM3_0964	-	hypothetical protein
965	 31.85	-1	1011838..1011972	-	44	21910501	-	SpyM3_0965	-	hypothetical protein
966	 38.05	0	1011969..1012265	-	98	21910502	-	SpyM3_0966	-	hypothetical protein
967	 33.33	-1	1012343..1012528	-	61	21910503	-	SpyM3_0967	-	hypothetical protein
968	 33.75	-1	1012695..1012934	+	79	21910504	-	SpyM3_0968	-	hypothetical protein
969	 32.38	-1	1013085..1013294	+	69	21910505	-	SpyM3_0969	-	hypothetical protein
970	 39.02	0	1013253..1013498	-	81	21910506	-	SpyM3_0970	-	hypothetical protein
971	 29.17	-2	1013510..1013749	-	79	21910507	-	SpyM3_0971	-	hypothetical protein
972	 31.78	-1	1013823..1014209	+	128	21910508	-	SpyM3_0972	-	hypothetical protein
973	 34.30	-1	1014198..1014404	-	68	21910509	-	SpyM3_0973	-	hypothetical protein
974	 33.97	-1	1014461..1015240	+	259	21910510	-	SpyM3_0974	-	hypothetical protein
975	 30.30	-2	1015176..1015340	-	54	21910511	-	SpyM3_0975	-	hypothetical protein
976	 37.41	0	1015374..1015520	-	48	21910512	-	SpyM3_0976	-	hypothetical protein
977	 35.49	0	1015882..1016670	+	262	21910513	-	SpyM3_0977	-	putative repressor protein - phage associated
978	 33.43	-1	1017105..1018193	+	362	21910514	intP	SpyM3_0978	-	putative integrase - phage associated
979	 36.23	0	1018556..1019176	+	206	21910515	-	SpyM3_0979	-	hypothetical protein
980	 37.88	0	1019433..1021697	-	754	21910516	glgP	SpyM3_0980	-	putative glycogen (maltodextrin) phosphorylase
981	 37.15	0	1021732..1023225	-	497	21910517	malQ	SpyM3_0981	-	putative 4-alpha-glucanotransferase
982	 32.75	-1	1023340..1024359	-	339	21910518	malR	SpyM3_0982	-	putative maltose operon transcriptional repressor
983	 39.02	0	1024603..1025850	+	415	21910519	malE	SpyM3_0983	-	putative maltose/maltodextrin-binding protein
984	 37.08	0	1026124..1027485	+	453	21910520	malF	SpyM3_0984	-	putative maltose/maltodextrin ABC transport system (permease)
985	 35.96	0	1027485..1028321	+	278	21910521	malG	SpyM3_0985	-	putative maltose/maltodextrin ABC transport system (permease)
986	 37.04	0	1028323..1028484	-	53	21910522	-	SpyM3_0986	-	hypothetical protein
987	 40.24	0	1028508..1028753	+	81	21910523	-	SpyM3_0987	-	putative transposase N-terminal portion
988	 40.65	0	1028695..1029282	+	195	21910524	-	SpyM3_0988	-	putative transposase carboxy terminal portion
989	 41.11	0	1029251..1029430	-	59	21910525	-	SpyM3_0989	-	hypothetical protein
990	 35.98	0	1029797..1030780	-	327	21910526	-	SpyM3_0990	-	putative esterase
991	 35.81	0	1030811..1032061	-	416	21910527	dltD	SpyM3_0991	-	putative secreted protein DltD
992	 36.25	0	1032054..1032293	-	79	21910528	dltC	SpyM3_0992	-	D-alanine--poly(phosphoribitol) ligase subunit 2
993	 37.15	0	1032311..1033567	-	418	21910529	dltB	SpyM3_0993	-	putative dltB protein, D-alanine transfer from Dcp to undecaprenol-phosphate
994	 40.29	0	1033564..1035102	-	512	21910530	dltA	SpyM3_0994	-	D-alanine--D-alanyl carrier protein ligase
995	 26.39	-2	1035114..1035257	-	47	21910531	-	SpyM3_0995	-	hypothetical protein
996	 39.41	0	1035521..1037512	-	663	21910532	uvrB	SpyM3_0996	-	excinuclease ABC subunit B
997	 38.02	0	1037705..1039879	+	724	21910533	glnP	SpyM3_0997	-	putative glutamine ABC transporter, glutamine-binding protein/permease protein
998	 40.76	0	1039879..1040619	+	246	21910534	glnQ	SpyM3_0998	-	putative ABC transporter ATP-binding protein - glutamine transport
999	 37.91	0	1040767..1040919	-	50	21910535	-	SpyM3_0999	-	hypothetical protein
1000	 40.14	0	1040916..1042295	-	459	21910536	-	SpyM3_1000	-	putative PTS system IIC component
1001	 38.67	0	1042473..1042922	-	149	21910537	-	SpyM3_1001	-	hypothetical protein
1002	 44.05	+1	1042919..1043254	-	111	21910538	-	SpyM3_1002	-	PTS system, cellobiose-specific IIA component
1003	 38.78	0	1043257..1043568	-	103	21910539	-	SpyM3_1003	-	PTS system, cellobiose-specific IIB component
1004	 40.00	0	1043591..1043800	-	69	21910540	-	SpyM3_1004	-	putative transcriptional antiterminator
1005	 38.45	0	1043710..1045584	-	624	21910541	-	SpyM3_1005	-	putative transcriptional antiterminator
1006	 41.64	0	1045690..1046784	-	364	21910542	-	SpyM3_1006	-	outer surface protein
1007	 40.76	0	1046793..1048193	-	466	21910543	bglA.2	SpyM3_1007	-	putative beta-glucosidase
1008	 37.64	0	1048418..1049113	+	231	21910544	-	SpyM3_1008	-	hypothetical protein
1009	 35.22	0	1049118..1049276	-	52	21910545	-	SpyM3_1009	-	hypothetical protein
1010	 44.27	+1	1049345..1050652	-	435	21910546	obgE	SpyM3_1010	-	GTPase ObgE
1011	 37.18	0	1051135..1051602	+	155	21910547	-	SpyM3_1011	-	putative transposase associated protein
1012	 39.53	0	1051623..1052429	+	268	21910548	-	SpyM3_1012	-	putative transposase - IS861
1013	 42.15	0	1052729..1053601	-	290	21910549	nadC	SpyM3_1013	-	nicotinate-nucleotide pyrophosphorylase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.