IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
857	 40.54	0	914274..914606	-	110	21910393	-	SpyM3_0857	-	putative glycine cleavage system H protein
858	 39.24	0	914648..915646	-	332	21910394	-	SpyM3_0858	-	hypothetical protein
859	 40.67	0	915643..916842	-	399	21910395	-	SpyM3_0859	-	putative trimethylamine dehydrogenase
860	 39.70	0	916839..917576	-	245	21910396	-	SpyM3_0860	-	hypothetical protein
861	 36.80	0	917871..918563	+	230	21910397	dpfB	SpyM3_0861	-	phosphopantothenate--cysteine ligase
862	 35.90	0	918556..919101	+	181	21910398	dfp	SpyM3_0862	-	phosphopantothenoylcysteine decarboxylase
863	 33.16	-1	919159..919728	+	189	21910399	-	SpyM3_0863	-	hypothetical protein
864	 37.75	0	919904..921622	+	572	21910400	pgmA	SpyM3_0864	-	putative phosphoglucomutase
865	 38.91	0	921837..922661	-	274	21910401	-	SpyM3_0865	-	putative sugar ABC transporter (permease protein)
866	 37.46	0	922795..923859	-	354	21910402	-	SpyM3_0866	-	putative sugar ABC transporter (permease protein)
867	 37.31	0	923852..925384	-	510	21910403	-	SpyM3_0867	-	putative sugar ABC transporter ATP-binding protein
868	 38.46	0	925523..926575	-	350	21910404	-	SpyM3_0868	-	putative ABC transporter (lipoprotein)
869	 35.90	0	926669..927058	-	129	21910405	cdd	SpyM3_0869	-	cytidine deaminase
870	 34.01	-1	927718..928311	-	197	21910406	-	SpyM3_0870	-	16S rRNA m(2)G 1207 methyltransferase
871	 31.60	-1	928579..929499	+	306	21910407	coaA	SpyM3_0871	-	pantothenate kinase
872	 39.74	0	929568..929801	+	77	161485743	rpsT	SpyM3_0872	-	30S ribosomal protein S20
873	 31.58	-1	929926..931236	-	436	21910409	ciaH	SpyM3_0873	-	putative sensor histidine kinase protein
874	 32.00	-1	931229..931903	-	224	21910410	ciaR	SpyM3_0874	-	putative DNA-binding response regulator
875	 36.68	0	932250..934787	-	845	21910411	pepN	SpyM3_0875	-	aminopeptidase N
876	 35.32	0	934992..935645	-	217	21910412	phoU	SpyM3_0876	-	putative phosphate uptake regulatory protein
877	 39.11	0	935713..936474	-	253	21910413	pstB	SpyM3_0877	-	putative phosphate ABC transporter ATP-binding protein
878	 39.18	0	936484..937287	-	267	21910414	pstB2	SpyM3_0878	-	phosphate ABC transporter ATP-binding protein
879	 40.65	0	937303..938190	-	295	21910415	pstC	SpyM3_0879	-	putative phosphate ABC transporter (permease protein)
880	 42.74	+1	938180..939115	-	311	21910416	pstC2	SpyM3_0880	-	putative phosphate ABC transporter (permease protein)
881	 38.41	0	939126..939992	-	288	21910417	pstS	SpyM3_0881	-	putative phosphate ABC transporter, periplasmic phosphate-binding protein
882	 40.52	0	940131..941438	-	435	21910418	-	SpyM3_0882	-	putative nucleolar protein
883	 38.91	0	941444..942232	-	262	21910419	-	SpyM3_0883	-	putative myo-inositol-1(or 4)-monophosphatase
884	 32.62	-1	942222..942500	-	92	21910420	-	SpyM3_0884	-	hypothetical protein
885	 34.81	-1	942502..942906	-	134	21910421	spxA	SpyM3_0885	-	transcriptional regulator Spx
886	 34.08	-1	942949..943881	-	310	21910422	mreA	SpyM3_0886	-	bifunctional riboflavin kinase/FMN adenylyltransferase
887	 41.81	0	943910..944794	-	294	161485742	truB	SpyM3_0887	-	tRNA pseudouridine synthase B
888	 38.40	0	944910..946250	-	446	21910424	-	SpyM3_0888	-	hypothetical protein
889	 36.78	0	946347..947303	-	318	21910425	-	SpyM3_0889	-	hypothetical protein
890	 39.36	0	947314..947910	-	198	21910426	-	SpyM3_0890	-	hypothetical protein
891	 38.91	0	948002..950638	-	878	21910427	-	SpyM3_0891	-	hypothetical protein
892	 40.17	0	950653..951354	-	233	21910428	-	SpyM3_0892	-	ABC transporter ATP-binding protein
893	 37.02	0	951472..952014	+	180	21910429	-	SpyM3_0893	-	TetR/AcrR family transcriptional regulator
894	 35.05	0	952157..952798	-	213	21910430	-	SpyM3_0894	-	putative transcriptional regulator
895	 34.76	-1	952961..953449	-	162	21910431	-	SpyM3_0895	-	hypothetical protein
896	 31.34	-1	953460..953660	-	66	21910432	-	SpyM3_0896	-	hypothetical protein
897	 33.89	-1	953701..954240	-	179	21910433	-	SpyM3_0897	-	hypothetical protein
898	 31.22	-1	954253..954441	-	62	21910434	-	SpyM3_0898	-	hypothetical protein
899	 33.67	-1	954452..955039	-	195	21910435	-	SpyM3_0899	-	hypothetical protein
900	 42.97	+1	955100..955348	-	82	21910436	-	SpyM3_0900	-	hypothetical protein
901	 41.10	0	955711..958029	-	772	21910437	pcrA	SpyM3_0901	-	DNA helicase II
902	 35.67	0	958398..958568	-	56	21910438	-	SpyM3_0902	-	hypothetical protein
903	 43.31	+1	958559..959881	+	440	21910439	-	SpyM3_0903	-	Na(+)-linked D-alanine glycine permease
904	 36.17	0	960001..961236	+	411	21910440	-	SpyM3_0904	-	putative cation efflux system protein
905	 35.79	0	961606..962379	-	257	21910441	cfa	SpyM3_0905	-	cAMP factor
906	 33.21	-1	962749..963585	-	278	21910442	-	SpyM3_0906	-	putative amino acid ABC transporter, periplasmic amino acid-binding protein
907	 39.84	0	963601..964230	-	209	21910443	-	SpyM3_0907	-	putative amino acid ABC transporter ATP-binding protein
908	 35.67	0	964240..964881	-	213	21910444	-	SpyM3_0908	-	putative amino acid ABC transporter (permease protein)
909	 38.39	0	964988..965323	-	111	21910445	-	SpyM3_0909	-	hypothetical protein
910	 41.21	0	965519..967282	-	587	21910446	glmS	SpyM3_0910	-	D-fructose-6-phosphate amidotransferase
911	 32.97	-1	967509..968066	-	185	21910447	sipC	SpyM3_0911	-	putative signal peptidase I
912	 40.25	0	968284..969786	-	500	21910448	pyk	SpyM3_0912	-	pyruvate kinase
913	 43.20	+1	969849..970862	-	337	21910449	pfkA	SpyM3_0913	-	6-phosphofructokinase
914	 37.64	0	970942..974052	-	1036	21910450	dnaE	SpyM3_0914	-	DNA polymerase III DnaE
915	 37.37	0	974237..974608	+	123	21910451	-	SpyM3_0915	-	GntR family transcriptional regulator
916	 35.19	0	974608..975306	+	232	21910452	-	SpyM3_0916	-	ABC transporter ATP-binding protein
917	 31.42	-1	975316..976101	+	261	21910453	-	SpyM3_0917	-	ABC transporter permease
918	 32.52	-1	976232..976846	-	204	21910454	-	SpyM3_0918	-	hypothetical protein
919	 40.21	0	977437..977625	-	62	21910455	-	SpyM3_0919	-	hypothetical protein
920	 31.16	-1	977738..978520	-	260	21910456	ssa	SpyM3_0920	-	streptococcal superantigen SSA - phage associated
921	 36.18	0	978733..979857	-	374	21910457	-	SpyM3_0921	-	hypothetical protein
922	 44.67	+1	979995..981203	-	402	21910458	-	SpyM3_0922	-	putative cell wall hydrolase - phage associated
923	 39.04	0	981319..981546	-	75	21910459	-	SpyM3_0923	-	putative holin - phage associated
924	 34.78	-1	981543..981818	-	91	21910460	-	SpyM3_0924	-	hypothetical protein
925	 42.72	+1	981828..982445	-	205	21910461	-	SpyM3_0925	-	hypothetical protein
926	 35.19	0	982448..982879	-	143	21910462	-	SpyM3_0926	-	hypothetical protein
927	 44.48	+1	982891..984774	-	627	21910463	-	SpyM3_0927	-	hypothetical protein
928	 43.90	+1	984859..984981	-	40	21910464	-	SpyM3_0928	-	hyaluronidase C-terminal portion - phage associated
929	 44.44	+1	985021..985803	-	260	21910465	hylP.2	SpyM3_0929	-	hyaluronidase N-terminal portion - phage associated
930	 41.83	0	985800..987776	-	658	21910466	-	SpyM3_0930	-	hypothetical protein
931	 42.09	0	987941..988648	-	235	21910467	-	SpyM3_0931	-	hypothetical protein
932	 41.95	0	988648..992571	-	1307	21910468	-	SpyM3_0932	-	hypothetical protein
933	 36.90	0	992584..992751	-	55	21910469	-	SpyM3_0933	-	hypothetical protein
934	 36.39	0	992781..993107	-	108	21910470	-	SpyM3_0934	-	hypothetical protein
935	 41.83	0	993160..993771	-	203	21910471	-	SpyM3_0935	-	hypothetical protein
936	 34.98	0	993790..994215	-	141	21910472	-	SpyM3_0936	-	hypothetical protein
937	 40.21	0	994212..994589	-	125	21910473	-	SpyM3_0937	-	hypothetical protein
938	 34.51	-1	994586..994924	-	112	21910474	-	SpyM3_0938	-	hypothetical protein
939	 37.62	0	994921..995223	-	100	21910475	-	SpyM3_0939	-	hypothetical protein
940	 38.76	0	995226..995354	-	42	21910476	-	SpyM3_0940	-	hypothetical protein
941	 37.55	0	995368..996552	-	394	21910477	-	SpyM3_0941	-	hypothetical protein
942	 38.44	0	996578..997243	-	221	21910478	clpP.2	SpyM3_0942	-	putative ClpP protease ATP-dependent protease proteolytic subunit - phage associated
943	 39.89	0	997221..998441	-	406	21910479	-	SpyM3_0943	-	hypothetical protein
944	 36.70	0	998475..998741	-	88	21910480	-	SpyM3_0944	-	hypothetical protein
945	 30.99	-2	998734..998904	-	56	21910481	-	SpyM3_0945	-	hypothetical protein
946	 38.29	0	998901..1000655	-	584	21910482	-	SpyM3_0946	-	hypothetical protein
947	 37.61	0	1000670..1001137	-	155	21910483	-	SpyM3_0947	-	hypothetical protein
948	 38.94	0	1001309..1001647	-	112	21910484	-	SpyM3_0948	-	hypothetical protein
949	 46.73	+2	1001644..1001949	-	101	21910485	-	SpyM3_0949	-	hypothetical protein
950	 37.64	0	1002233..1002673	-	146	21910486	-	SpyM3_0950	-	hypothetical protein
951	 36.16	0	1002946..1003581	-	211	21910487	-	SpyM3_0951	-	hypothetical protein
952	 34.08	-1	1003581..1003982	-	133	21910488	-	SpyM3_0952	-	hypothetical protein
953	 37.07	0	1004173..1004547	-	124	21910489	-	SpyM3_0953	-	putative DNA methyltransferase - phage associated
954	 37.75	0	1004853..1005056	-	67	21910490	-	SpyM3_0954	-	hypothetical protein
955	 39.25	0	1005040..1005360	-	106	21910491	-	SpyM3_0955	-	hypothetical protein
956	 31.88	-1	1005357..1005770	-	137	21910492	-	SpyM3_0956	-	hypothetical protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.