IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
774	 36.73	0	828156..829688	+	510	21910310	-	SpyM3_0774	-	hypothetical protein
775	 31.87	-1	829851..830465	+	204	21910311	-	SpyM3_0775	-	hypothetical protein
776	 32.71	-1	830645..831772	+	375	21910312	-	SpyM3_0776	-	hypothetical protein
777	 32.22	-1	831872..832501	+	209	21910313	radC	SpyM3_0777	-	DNA repair protein RadC
778	 38.94	0	832503..833198	-	231	21910314	-	SpyM3_0778	-	putative glutamine amidotransferase, class I
779	 38.76	0	833208..833852	-	214	21910315	-	SpyM3_0779	-	redox-sensing transcriptional repressor Rex
780	 29.02	-2	834104..834451	-	115	21910316	-	SpyM3_0780	-	hypothetical protein
781	 39.98	0	834441..835568	-	375	21910317	-	SpyM3_0781	-	putative iron-sulfur cofactor synthesis protein
782	 38.23	0	835565..836545	-	326	21910318	prs	SpyM3_0782	-	ribose-phosphate pyrophosphokinase
783	 32.99	-1	836685..837263	-	192	21910319	-	SpyM3_0783	-	hypothetical protein
784	 35.71	0	837351..838022	+	223	21910320	-	SpyM3_0784	-	putative GTP pyrophosphokinase
785	 37.40	0	837997..838833	+	278	21910321	ppnK	SpyM3_0785	-	inorganic polyphosphate/ATP-NAD kinase
786	 37.75	0	838830..839735	+	301	21910322	rluD	SpyM3_0786	-	putative ribosomal large subunit pseudouridine synthase
787	 38.65	0	839739..840734	+	331	161485746	eutD	SpyM3_0787	-	phosphotransacetylase
788	 42.54	+1	840861..841175	+	104	21910324	-	SpyM3_0788	-	putative oxidoreductase, short chain dehydrogenase/reductase
789	 42.22	0	841172..841621	+	149	21910325	-	SpyM3_0789	-	putative oxidoreductase, short chain dehydrogenase/reductase
790	 38.12	0	841814..842503	-	229	21910326	-	SpyM3_0790	-	Na+ driven multidrug efflux pump
791	 38.27	0	842926..843654	+	242	21910327	-	SpyM3_0791	-	putative ABC transporter ATP-binding protein
792	 39.10	0	843647..845173	+	508	21910328	-	SpyM3_0792	-	putative ABC transporter (binding protein)
793	 39.43	0	845451..846434	+	327	21910329	-	SpyM3_0793	-	guanosine 5'-monophosphate oxidoreductase
794	 38.49	0	846739..847320	+	193	21910330	xpt	SpyM3_0794	-	xanthine phosphoribosyltransferase
795	 40.34	0	847320..848603	+	427	21910331	-	SpyM3_0795	-	putative purine (xanthine) permease
796	 37.17	0	848667..849605	-	312	21910332	-	SpyM3_0796	-	putative thiamine biosynthesis lipoprotein precursor
797	 36.56	0	849658..849843	-	61	21910333	-	SpyM3_0797	-	4-oxalocrotonate tautomerase
798	 35.19	0	850011..850550	+	179	21910334	tdk	SpyM3_0798	-	thymidine kinase
799	 36.94	0	850585..851664	+	359	21910335	prfA	SpyM3_0799	-	peptide chain release factor 1
800	 35.71	0	851664..852503	+	279	21910336	hemK	SpyM3_0800	-	putative protoporphyrinogen oxidase
801	 37.73	0	852487..853077	+	196	21910337	-	SpyM3_0801	-	hypothetical protein
802	 41.06	0	853095..853547	+	150	21910338	-	SpyM3_0802	-	hypothetical protein
803	 42.40	+1	853537..854793	+	418	21910339	glyA	SpyM3_0803	-	serine hydroxymethyltransferase
804	 35.17	0	854800..855777	+	325	21910340	-	SpyM3_0804	-	hypothetical protein
805	 38.33	0	855778..856377	+	199	21910341	-	SpyM3_0805	-	hypothetical protein
806	 40.16	0	856502..858112	+	536	21910342	-	SpyM3_0806	-	putative ABC transporter ATP-binding protein
807	 38.43	0	858109..859836	+	575	21910343	-	SpyM3_0807	-	putative ABC transporter ATP-binding protein
808	 40.26	0	860077..861447	+	456	21910344	nox.1	SpyM3_0808	-	putative NADH oxidase
809	 40.85	0	861606..862589	-	327	21910345	ldh	SpyM3_0809	-	L-lactate dehydrogenase
810	 40.05	0	862780..865266	+	828	21910346	gyrA	SpyM3_0810	-	DNA gyrase subunit A
811	 36.00	0	865286..866035	+	249	21910347	-	SpyM3_0811	-	putative sortase
812	 35.99	0	866118..866531	+	137	21910348	-	SpyM3_0812	-	hypothetical protein
813	 37.07	0	867145..867519	+	124	21910349	-	SpyM3_0813	-	hypothetical protein
814	 38.16	0	867569..868480	-	303	21910350	-	SpyM3_0814	-	hypothetical protein
815	 37.63	0	868597..869247	-	216	21910351	hlyIII	SpyM3_0815	-	hypothetical protein
816	 37.64	0	869244..869684	-	146	21910352	-	SpyM3_0816	-	hypothetical protein
817	 38.40	0	869903..870751	+	282	21910353	rbgA	SpyM3_0817	-	ribosomal biogenesis GTPase
818	 41.92	0	870741..871532	+	263	21910354	rnhB	SpyM3_0818	-	ribonuclease HII
819	 39.31	0	871597..872433	+	278	21910355	smf	SpyM3_0819	-	Smf family DNA processing protein
820	 38.40	0	872539..874668	+	709	21910356	topA	SpyM3_0820	-	DNA topoisomerase I
821	 42.96	+1	874665..876149	+	494	21910357	gid	SpyM3_0821	-	tRNA (uracil-5-)-methyltransferase Gid
822	 42.08	0	876302..877708	+	468	161485745	-	SpyM3_0822	-	oxaloacetate decarboxylase
823	 37.46	0	877751..878065	+	104	21910359	-	SpyM3_0823	-	hypothetical protein
824	 42.45	+1	878065..878415	+	116	21910360	-	SpyM3_0824	-	putative methylmalonyl-CoA decarboxylase gamma-subunit
825	 43.15	+1	878425..879555	+	376	21910361	-	SpyM3_0825	-	putative methylmalonyl-CoA decarboxylase beta-subunit
826	 40.90	0	879756..880640	-	294	21910362	citG	SpyM3_0826	-	putative CitG protein,2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
827	 35.49	0	880633..881328	-	231	21910363	-	SpyM3_0827	-	GntR family transcriptional regulator
828	 40.72	0	881486..882892	-	468	21910364	-	SpyM3_0828	-	putative Mg2+/citrate complex transporter
829	 38.27	0	883269..883592	+	107	21910365	-	SpyM3_0829	-	hypothetical protein
830	 46.87	+2	883646..884044	+	132	161485744	-	SpyM3_0830	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
831	 41.83	0	884140..885210	+	356	21910367	-	SpyM3_0831	-	putative decarboxylase beta subunit
832	 41.42	0	885398..885706	+	102	21910368	citD	SpyM3_0832	-	citrate lyase subunit gamma
833	 42.45	+1	885694..886581	+	295	21910369	citE	SpyM3_0833	-	putative citrate lyase beta subunit
834	 42.79	+1	886584..888116	+	510	21910370	citF	SpyM3_0834	-	putative citrate lyase alpha subunit
835	 41.28	0	888109..888687	+	192	21910371	citX	SpyM3_0835	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
836	 43.15	+1	888702..890096	+	464	21910372	oadA	SpyM3_0836	-	oxaloacetate decarboxylase
837	 38.18	0	890207..891259	-	350	21910373	citC	SpyM3_0837	-	putative citrate lyase synthetase (citrate (pro-3S)-lyase ligase)
838	 36.44	0	891348..891830	-	160	21910374	-	SpyM3_0838	-	hypothetical protein
839	 37.82	0	892531..893601	-	356	21910375	xerS	SpyM3_0839	-	site-specific tyrosine recombinase XerS
840	 32.62	-1	894071..894769	+	232	21910376	-	SpyM3_0840	-	putative repressor protein
841	 40.50	0	894904..896466	-	520	21910377	ffh	SpyM3_0841	-	putative signal recognition particle -inhibited division protein
842	 32.75	-1	896481..896822	-	113	21910378	ylxM	SpyM3_0842	-	hypothetical protein
843	 38.91	0	896911..897609	-	232	21910379	-	SpyM3_0843	-	GntR family transcriptional regulator
844	 35.15	0	897692..899125	-	477	21910380	-	SpyM3_0844	-	hypothetical protein
845	 40.69	0	899292..900854	+	520	21910381	guaA	SpyM3_0845	-	bifunctional GMP synthase/glutamine amidotransferase protein
846	 35.13	0	900896..902119	-	407	21910382	murM.2	SpyM3_0846	-	putative anti resistance factor
847	 36.89	0	902484..904028	-	514	21910383	-	SpyM3_0847	-	ABC transporter ATP-binding protein
848	 33.33	-1	904162..904719	-	185	21910384	-	SpyM3_0848	-	hypothetical protein
849	 33.91	-1	904697..905563	-	288	21910385	pdxK	SpyM3_0849	-	pyridoxamine kinase
850	 33.49	-1	905653..906921	+	422	21910386	-	SpyM3_0850	-	hypothetical protein
851	 35.99	0	907392..907730	-	112	21910387	-	SpyM3_0851	-	putative anaerobic ribonucleotide reductase
852	 33.59	-1	908069..909646	-	525	21910388	-	SpyM3_0852	-	putative cardiolipin synthetase
853	 42.73	+1	909731..911401	-	556	21910389	fhs.1	SpyM3_0853	-	formate--tetrahydrofolate ligase
854	 38.53	0	911529..912548	-	339	21910390	lplA	SpyM3_0854	-	putative lipoate-protein ligase
855	 39.64	0	912595..913371	-	258	21910391	-	SpyM3_0855	-	SIR2 family protein
856	 40.87	0	913469..914251	-	260	21910392	-	SpyM3_0856	-	hypothetical protein
857	 40.54	0	914274..914606	-	110	21910393	-	SpyM3_0857	-	putative glycine cleavage system H protein
858	 39.24	0	914648..915646	-	332	21910394	-	SpyM3_0858	-	hypothetical protein
859	 40.67	0	915643..916842	-	399	21910395	-	SpyM3_0859	-	putative trimethylamine dehydrogenase
860	 39.70	0	916839..917576	-	245	21910396	-	SpyM3_0860	-	hypothetical protein
861	 36.80	0	917871..918563	+	230	21910397	dpfB	SpyM3_0861	-	phosphopantothenate--cysteine ligase
862	 35.90	0	918556..919101	+	181	21910398	dfp	SpyM3_0862	-	phosphopantothenoylcysteine decarboxylase
863	 33.16	-1	919159..919728	+	189	21910399	-	SpyM3_0863	-	hypothetical protein
864	 37.75	0	919904..921622	+	572	21910400	pgmA	SpyM3_0864	-	putative phosphoglucomutase
865	 38.91	0	921837..922661	-	274	21910401	-	SpyM3_0865	-	putative sugar ABC transporter (permease protein)
866	 37.46	0	922795..923859	-	354	21910402	-	SpyM3_0866	-	putative sugar ABC transporter (permease protein)
867	 37.31	0	923852..925384	-	510	21910403	-	SpyM3_0867	-	putative sugar ABC transporter ATP-binding protein
868	 38.46	0	925523..926575	-	350	21910404	-	SpyM3_0868	-	putative ABC transporter (lipoprotein)
869	 35.90	0	926669..927058	-	129	21910405	cdd	SpyM3_0869	-	cytidine deaminase
870	 34.01	-1	927718..928311	-	197	21910406	-	SpyM3_0870	-	16S rRNA m(2)G 1207 methyltransferase
871	 31.60	-1	928579..929499	+	306	21910407	coaA	SpyM3_0871	-	pantothenate kinase
872	 39.74	0	929568..929801	+	77	161485743	rpsT	SpyM3_0872	-	30S ribosomal protein S20
873	 31.58	-1	929926..931236	-	436	21910409	ciaH	SpyM3_0873	-	putative sensor histidine kinase protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.