IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
732	 42.30	0	786358..786714	-	118	21910268	-	SpyM3_0732	-	hypothetical protein
733	 35.00	0	786772..787011	-	79	21910269	-	SpyM3_0733	-	hypothetical protein
734	 32.14	-1	787275..787526	-	83	21910270	-	SpyM3_0734	-	hypothetical protein
735	 38.78	0	787667..787813	-	48	21910271	-	SpyM3_0735	-	hypothetical protein
736	 35.24	0	787967..788176	+	69	21910272	-	SpyM3_0736	-	hypothetical protein
737	 43.26	+1	789310..791142	+	610	21910273	lepA	SpyM3_0737	-	GTP-binding protein LepA
738	 54.36	+2	791329..793050	+	573	21910274	sclB	SpyM3_0738	-	collagen-like protein SclB
739	 42.24	0	793203..793640	+	145	21910275	csrA	SpyM3_0739	-	methionine sulfoxide reductase B
740	 41.86	0	793770..794789	+	339	21910276	-	SpyM3_0740	-	hypothetical protein
741	 39.20	0	794996..795421	+	141	21910277	-	SpyM3_0741	-	PTS system, mannose/fructose family IIA component
742	 40.85	0	795448..795939	+	163	21910278	-	SpyM3_0742	-	PTS system, mannose/fructose family IIB component
743	 41.41	0	796085..796765	+	226	21910279	-	SpyM3_0743	-	PTS system, mannose/fructose family IIC component
744	 39.73	0	796762..797589	+	275	21910280	-	SpyM3_0744	-	PTS system, mannose/fructose family IID component
745	 35.70	0	797725..799374	+	549	21910281	-	SpyM3_0745	-	putative two-component sensor histidine kinase
746	 34.98	0	799378..800166	+	262	21910282	-	SpyM3_0746	-	putative two-component response regulator
747	 34.77	-1	800160..801206	+	348	21910283	-	SpyM3_0747	-	putative periplasmic-iron-binding protein
748	 40.63	0	801319..802689	+	456	21910284	-	SpyM3_0748	-	putative succinic semialdehyde dehydrogenase
749	 37.17	0	802819..804615	+	598	21910285	uvrC	SpyM3_0749	-	excinuclease ABC subunit C
750	 39.47	0	804799..805401	+	200	21910286	-	SpyM3_0750	-	NAD(P)H-dependent quinone reductase
751	 42.77	+1	805526..806935	+	469	21910287	-	SpyM3_0751	-	dipeptidase PepV
752	 42.19	0	807003..808379	-	458	21910288	trmE	SpyM3_0752	-	tRNA modification GTPase TrmE
753	 41.12	0	808712..809212	+	166	21910289	rplJ	SpyM3_0753	-	50S ribosomal protein L10
754	 41.26	0	809277..809642	+	121	21910290	rplL	SpyM3_0754	-	50S ribosomal protein L7/L12
755	 40.38	0	809869..811116	+	415	21910291	-	SpyM3_0755	-	putative D,D-carboxypeptidase, penicillin-binding protein
756	 36.45	0	811232..812194	-	320	21910292	-	SpyM3_0756	-	hypothetical protein
757	 33.97	-1	812282..812437	+	51	21910293	-	SpyM3_0757	-	hypothetical protein
758	 40.22	0	812527..813804	+	425	21910294	folC.1	SpyM3_0758	-	dihydrofolate synthase
759	 40.46	0	813821..814423	+	200	21910295	folE	SpyM3_0759	-	GTP cyclohydrolase I
760	 43.95	+1	814432..815232	+	266	21910296	folP	SpyM3_0760	-	dihydropteroate synthase
761	 40.56	0	815239..815598	+	119	21910297	folQ	SpyM3_0761	-	dihydroneopterin aldolase
762	 39.88	0	815595..816083	+	162	21910298	folK	SpyM3_0762	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
763	 41.33	0	816245..817132	+	295	21910299	murB	SpyM3_0763	-	UDP-N-acetylenolpyruvoylglucosamine reductase
764	 39.31	0	817178..818332	+	384	21910300	potA	SpyM3_0764	-	putative spermidine/putrescine ABC transporter ATP-binding protein
765	 39.75	0	818316..819110	+	264	21910301	potB	SpyM3_0765	-	putative spermidine/putrescine ABC transporter (permease protein)
766	 36.94	0	819107..819883	+	258	21910302	potC	SpyM3_0766	-	putative spermidine/putrescine ABC transporter (permease protein)
767	 37.24	0	819876..820949	+	357	21910303	potD	SpyM3_0767	-	putative spermidine/putrescine ABC transporter (periplasmic transport protein)
768	 37.54	0	821004..821669	-	221	21910304	-	SpyM3_0768	-	putative two-component response regulator
769	 39.23	0	821650..823191	-	513	21910305	-	SpyM3_0769	-	putative two-component sensor histidine kinase
770	 42.04	0	823352..824683	+	443	21910306	malP	SpyM3_0770	-	putative L-malate permease
771	 41.73	0	824714..825880	+	388	21910307	-	SpyM3_0771	-	NAD-dependent malic enzyme
772	 38.67	0	825962..827011	-	349	21910308	-	SpyM3_0772	-	putative zinc-containing alcohol dehydrogenase
773	 36.07	0	827247..827978	+	243	21910309	aphA	SpyM3_0773	-	acid phosphatase/phosphotransferase
774	 36.73	0	828156..829688	+	510	21910310	-	SpyM3_0774	-	hypothetical protein
775	 31.87	-1	829851..830465	+	204	21910311	-	SpyM3_0775	-	hypothetical protein
776	 32.71	-1	830645..831772	+	375	21910312	-	SpyM3_0776	-	hypothetical protein
777	 32.22	-1	831872..832501	+	209	21910313	radC	SpyM3_0777	-	DNA repair protein RadC
778	 38.94	0	832503..833198	-	231	21910314	-	SpyM3_0778	-	putative glutamine amidotransferase, class I
779	 38.76	0	833208..833852	-	214	21910315	-	SpyM3_0779	-	redox-sensing transcriptional repressor Rex
780	 29.02	-2	834104..834451	-	115	21910316	-	SpyM3_0780	-	hypothetical protein
781	 39.98	0	834441..835568	-	375	21910317	-	SpyM3_0781	-	putative iron-sulfur cofactor synthesis protein
782	 38.23	0	835565..836545	-	326	21910318	prs	SpyM3_0782	-	ribose-phosphate pyrophosphokinase
783	 32.99	-1	836685..837263	-	192	21910319	-	SpyM3_0783	-	hypothetical protein
784	 35.71	0	837351..838022	+	223	21910320	-	SpyM3_0784	-	putative GTP pyrophosphokinase
785	 37.40	0	837997..838833	+	278	21910321	ppnK	SpyM3_0785	-	inorganic polyphosphate/ATP-NAD kinase
786	 37.75	0	838830..839735	+	301	21910322	rluD	SpyM3_0786	-	putative ribosomal large subunit pseudouridine synthase
787	 38.65	0	839739..840734	+	331	161485746	eutD	SpyM3_0787	-	phosphotransacetylase
788	 42.54	+1	840861..841175	+	104	21910324	-	SpyM3_0788	-	putative oxidoreductase, short chain dehydrogenase/reductase
789	 42.22	0	841172..841621	+	149	21910325	-	SpyM3_0789	-	putative oxidoreductase, short chain dehydrogenase/reductase
790	 38.12	0	841814..842503	-	229	21910326	-	SpyM3_0790	-	Na+ driven multidrug efflux pump
791	 38.27	0	842926..843654	+	242	21910327	-	SpyM3_0791	-	putative ABC transporter ATP-binding protein
792	 39.10	0	843647..845173	+	508	21910328	-	SpyM3_0792	-	putative ABC transporter (binding protein)
793	 39.43	0	845451..846434	+	327	21910329	-	SpyM3_0793	-	guanosine 5'-monophosphate oxidoreductase
794	 38.49	0	846739..847320	+	193	21910330	xpt	SpyM3_0794	-	xanthine phosphoribosyltransferase
795	 40.34	0	847320..848603	+	427	21910331	-	SpyM3_0795	-	putative purine (xanthine) permease
796	 37.17	0	848667..849605	-	312	21910332	-	SpyM3_0796	-	putative thiamine biosynthesis lipoprotein precursor
797	 36.56	0	849658..849843	-	61	21910333	-	SpyM3_0797	-	4-oxalocrotonate tautomerase
798	 35.19	0	850011..850550	+	179	21910334	tdk	SpyM3_0798	-	thymidine kinase
799	 36.94	0	850585..851664	+	359	21910335	prfA	SpyM3_0799	-	peptide chain release factor 1
800	 35.71	0	851664..852503	+	279	21910336	hemK	SpyM3_0800	-	putative protoporphyrinogen oxidase
801	 37.73	0	852487..853077	+	196	21910337	-	SpyM3_0801	-	hypothetical protein
802	 41.06	0	853095..853547	+	150	21910338	-	SpyM3_0802	-	hypothetical protein
803	 42.40	+1	853537..854793	+	418	21910339	glyA	SpyM3_0803	-	serine hydroxymethyltransferase
804	 35.17	0	854800..855777	+	325	21910340	-	SpyM3_0804	-	hypothetical protein
805	 38.33	0	855778..856377	+	199	21910341	-	SpyM3_0805	-	hypothetical protein
806	 40.16	0	856502..858112	+	536	21910342	-	SpyM3_0806	-	putative ABC transporter ATP-binding protein
807	 38.43	0	858109..859836	+	575	21910343	-	SpyM3_0807	-	putative ABC transporter ATP-binding protein
808	 40.26	0	860077..861447	+	456	21910344	nox.1	SpyM3_0808	-	putative NADH oxidase
809	 40.85	0	861606..862589	-	327	21910345	ldh	SpyM3_0809	-	L-lactate dehydrogenase
810	 40.05	0	862780..865266	+	828	21910346	gyrA	SpyM3_0810	-	DNA gyrase subunit A
811	 36.00	0	865286..866035	+	249	21910347	-	SpyM3_0811	-	putative sortase
812	 35.99	0	866118..866531	+	137	21910348	-	SpyM3_0812	-	hypothetical protein
813	 37.07	0	867145..867519	+	124	21910349	-	SpyM3_0813	-	hypothetical protein
814	 38.16	0	867569..868480	-	303	21910350	-	SpyM3_0814	-	hypothetical protein
815	 37.63	0	868597..869247	-	216	21910351	hlyIII	SpyM3_0815	-	hypothetical protein
816	 37.64	0	869244..869684	-	146	21910352	-	SpyM3_0816	-	hypothetical protein
817	 38.40	0	869903..870751	+	282	21910353	rbgA	SpyM3_0817	-	ribosomal biogenesis GTPase
818	 41.92	0	870741..871532	+	263	21910354	rnhB	SpyM3_0818	-	ribonuclease HII
819	 39.31	0	871597..872433	+	278	21910355	smf	SpyM3_0819	-	Smf family DNA processing protein
820	 38.40	0	872539..874668	+	709	21910356	topA	SpyM3_0820	-	DNA topoisomerase I
821	 42.96	+1	874665..876149	+	494	21910357	gid	SpyM3_0821	-	tRNA (uracil-5-)-methyltransferase Gid
822	 42.08	0	876302..877708	+	468	161485745	-	SpyM3_0822	-	oxaloacetate decarboxylase
823	 37.46	0	877751..878065	+	104	21910359	-	SpyM3_0823	-	hypothetical protein
824	 42.45	+1	878065..878415	+	116	21910360	-	SpyM3_0824	-	putative methylmalonyl-CoA decarboxylase gamma-subunit
825	 43.15	+1	878425..879555	+	376	21910361	-	SpyM3_0825	-	putative methylmalonyl-CoA decarboxylase beta-subunit
826	 40.90	0	879756..880640	-	294	21910362	citG	SpyM3_0826	-	putative CitG protein,2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
827	 35.49	0	880633..881328	-	231	21910363	-	SpyM3_0827	-	GntR family transcriptional regulator
828	 40.72	0	881486..882892	-	468	21910364	-	SpyM3_0828	-	putative Mg2+/citrate complex transporter
829	 38.27	0	883269..883592	+	107	21910365	-	SpyM3_0829	-	hypothetical protein
830	 46.87	+2	883646..884044	+	132	161485744	-	SpyM3_0830	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
831	 41.83	0	884140..885210	+	356	21910367	-	SpyM3_0831	-	putative decarboxylase beta subunit
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.