IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
569	 35.93	0	625937..628936	+	999	21910105	-	SpyM3_0569	-	putative surface antigen
570	 36.82	0	628956..629357	+	133	21910106	-	SpyM3_0570	-	hypothetical protein
571	 33.90	-1	629537..630412	-	291	21910107	czcD	SpyM3_0571	-	putative cation-efflux system membrane protein
572	 29.89	-2	630548..631069	+	173	21910108	-	SpyM3_0572	-	hypothetical protein
573	 37.76	0	631284..631802	+	172	21910109	rimM	SpyM3_0573	-	16S rRNA-processing protein
574	 41.26	0	631792..632523	+	243	21910110	trmD	SpyM3_0574	-	tRNA (guanine-N(1)-)-methyltransferase
575	 37.26	0	632523..633515	+	330	21910111	-	SpyM3_0575	-	putative thioredoxin reductase
576	 39.75	0	633693..634751	+	352	21910112	-	SpyM3_0576	-	regulatory protein
577	 40.26	0	634764..635687	+	307	21910113	apbA	SpyM3_0577	-	2-dehydropantoate 2-reductase
578	 36.13	0	635943..636656	+	237	21910114	fruR	SpyM3_0578	-	putative fructose operon transcriptional repressor
579	 40.81	0	636776..637564	+	262	21910115	fruK	SpyM3_0579	-	putative fructose-1-phosphate kinase
580	 41.60	0	637561..639507	+	648	21910116	fruA	SpyM3_0580	-	PTS system, fructose-specific IIABC component
581	 37.21	0	639606..640199	+	197	21910117	-	SpyM3_0581	-	putative peptidoglycan hydrolase
582	 38.70	0	640426..641058	+	210	21910118	-	SpyM3_0582	-	putative peptidoglycan hydrolase
583	 38.04	0	642015..643034	-	339	21910119	-	SpyM3_0583	-	hypothetical protein
584	 41.24	0	643539..643715	+	58	21910120	-	SpyM3_0584	-	hypothetical protein
585	 35.17	0	643943..644323	+	126	21910121	-	SpyM3_0585	-	hypothetical protein
586	 36.75	0	644323..645171	+	282	21910122	-	SpyM3_0586	-	hypothetical protein
587	 39.95	0	645296..646504	+	402	21910123	papS	SpyM3_0587	-	tRNA CCA-pyrophosphorylase
588	 39.40	0	646501..648378	+	625	21910124	-	SpyM3_0588	-	putative ABC transporter ATP-binding protein
589	 30.72	-2	648882..649034	+	50	21910125	-	SpyM3_0589	-	hypothetical protein
590	 35.52	0	649290..649700	+	136	21910126	fms	SpyM3_0590	-	peptide deformylase
591	 35.72	0	649782..651794	-	670	21910127	-	SpyM3_0591	-	5'-nucleotidase
592	 35.48	0	652014..652664	+	216	21910128	-	SpyM3_0592	-	GTP pyrophosphokinase
593	 34.68	-1	652667..653335	+	222	21910129	-	SpyM3_0593	-	putative two-component response regulator
594	 34.87	-1	653344..654576	+	410	21910130	-	SpyM3_0594	-	putative putative two-component sensory transduction histidine kinase
595	 42.66	+1	654870..655748	+	292	21910131	mvaK1	SpyM3_0595	-	mevalonate kinase
596	 40.86	0	655811..656674	+	287	21910132	mvaD	SpyM3_0596	-	mevalonate diphosphate decarboxylase
597	 42.86	+1	656667..657674	+	335	21910133	mvaK2	SpyM3_0597	-	phosphomevalonate kinase
598	 42.12	0	657667..658656	+	329	21910134	-	SpyM3_0598	-	isopentenyl pyrophosphate isomerase
599	 40.06	0	658886..660163	-	425	21910135	mvaS.1	SpyM3_0599	-	putative 3-hydroxy-3-methylglutaryl-coenzyme A
600	 37.59	0	660150..661325	-	391	21910136	mvaS.2	SpyM3_0600	-	putative 3-hydroxy-3-methylglutaryl-coenzyme A synthase
601	 34.88	0	661534..662373	+	279	161485748	thyA	SpyM3_0601	-	thymidylate synthase
602	 36.75	0	662453..662950	+	165	21910138	dyr	SpyM3_0602	-	putative dihydrofolate reductase
603	 34.50	-1	662970..663140	+	56	21910139	-	SpyM3_0603	-	hypothetical protein
604	 38.70	0	663270..664499	+	409	21910140	clpX	SpyM3_0604	-	ATP-dependent protease ATP-binding subunit
605	 38.67	0	664509..665108	+	199	21910141	-	SpyM3_0605	-	GTPase EngB
606	 34.14	-1	665256..666002	+	248	21910142	-	SpyM3_0606	-	hypothetical protein
607	 38.48	0	666055..668154	-	699	21910143	clpL	SpyM3_0607	-	putative ATP-dependent Clp proteinase (ATP-binding subunit)
608	 42.84	+1	668534..669217	+	227	21910144	rpiA	SpyM3_0608	-	ribose-5-phosphate isomerase A
609	 42.49	+1	669294..670505	+	403	21910145	deoB	SpyM3_0609	-	phosphopentomutase
610	 41.04	0	670524..670964	+	146	21910146	arsC	SpyM3_0610	-	putative arsenate reductase
611	 41.36	0	670948..671757	+	269	21910147	punA	SpyM3_0611	-	purine nucleoside phosphorylase
612	 43.56	+1	672528..673133	+	201	21910148	deoD2	SpyM3_0612	-	putative purine nucleoside phosphorylase
613	 39.60	0	673261..673914	+	217	21910149	-	SpyM3_0613	-	putative histidine protein kinase
614	 40.20	0	673994..674779	-	261	21910150	cpsY	SpyM3_0614	-	putative transcriptional regulator
615	 36.50	0	675121..675657	+	178	21910151	-	SpyM3_0615	-	hypothetical protein
616	 41.99	0	675934..676626	+	230	21910152	pyrF	SpyM3_0616	-	orotidine 5'-phosphate decarboxylase
617	 39.52	0	676684..677313	+	209	21910153	pyrE	SpyM3_0617	-	orotate phosphoribosyltransferase
618	 42.27	0	677510..678964	+	484	21910154	amiC	SpyM3_0618	-	amidase
619	 37.62	0	679082..679945	+	287	21910155	-	SpyM3_0619	-	putative ABC transporter (binding protein)
620	 39.32	0	679974..680624	+	216	21910156	-	SpyM3_0620	-	putative ABC transporter (permease)
621	 42.81	+1	680757..681410	+	217	21910157	ung	SpyM3_0621	-	uracil-DNA glycosylase
622	 40.98	0	681542..682810	+	422	21910158	pyrC	SpyM3_0622	-	dihydroorotase
623	 32.78	-1	682868..683590	-	240	21910159	-	SpyM3_0623	-	putative glycerol-3-phosphate acyltransferase PlsY
624	 41.73	0	683641..685593	+	650	21910160	parE	SpyM3_0624	-	DNA topoisomerase IV subunit B
625	 40.24	0	685684..688143	+	819	161485747	parC	SpyM3_0625	-	DNA topoisomerase IV subunit A
626	 40.74	0	688263..689288	+	341	21910162	bcaT	SpyM3_0626	-	branched-chain amino acid aminotransferase
627	 31.17	-1	689352..689582	+	76	21910163	-	SpyM3_0627	-	hypothetical protein
628	 41.29	0	689994..691199	+	401	21910164	rpsA	SpyM3_0628	-	30S ribosomal protein S1
629	 33.00	-1	691746..692048	-	100	21910165	-	SpyM3_0629	-	hypothetical protein
630	 38.10	0	692249..693235	+	328	21910166	-	SpyM3_0630	-	hypothetical protein
631	 40.57	0	693546..693932	+	128	21910167	-	SpyM3_0631	-	hypothetical protein
632	 39.49	0	693991..694899	+	302	21910168	-	SpyM3_0632	-	putative exfoliative toxin
633	 41.81	0	695017..695193	-	58	21910169	-	SpyM3_0633	-	hypothetical protein
634	 43.00	+1	695327..696226	+	299	21910170	miaA	SpyM3_0634	-	tRNA delta(2)-isopentenylpyrophosphate transferase
635	 39.55	0	696380..697537	+	385	21910171	hflX	SpyM3_0635	-	putative GTP-binding protein
636	 38.21	0	697530..698165	+	211	21910172	-	SpyM3_0636	-	hypothetical protein
637	 40.54	0	698180..699109	+	309	21910173	-	SpyM3_0637	-	ribonuclease Z
638	 42.09	0	699109..699873	+	254	21910174	-	SpyM3_0638	-	oxidoreductase
639	 42.15	0	699870..702080	+	736	21910175	recJ	SpyM3_0639	-	putative single-strand DNA-specific exonuclease
640	 39.11	0	702230..702748	+	172	21910176	apt	SpyM3_0640	-	adenine phosphoribosyltransferase
641	 35.53	0	702829..703512	+	227	21910177	-	SpyM3_0641	-	hypothetical protein
642	 39.57	0	703509..704165	+	218	21910178	nth	SpyM3_0642	-	putative endonuclease III (DNA repair)
643	 42.36	+1	704237..704923	+	228	21910179	-	SpyM3_0643	-	hypothetical protein
644	 40.43	0	704913..705701	+	262	21910180	-	SpyM3_0644	-	hypothetical protein
645	 40.20	0	705741..706847	+	368	21910181	-	SpyM3_0645	-	putative oxidoreductase
646	 42.07	0	706905..707774	+	289	21910182	rmlA	SpyM3_0646	-	glucose-1-phosphate thymidyl transferase
647	 40.07	0	707774..708367	+	197	21910183	rmlC	SpyM3_0647	-	dTDP-4-dehydrorhamnose 3,5-epimerase
648	 40.15	0	708611..709651	+	346	21910184	rmlB	SpyM3_0648	-	dTDP-glucose 4,6-dehydratase
649	 39.62	0	709872..710348	+	158	21910185	mutX	SpyM3_0649	-	putative dGTP pyrophosphohydrolase
650	 38.32	0	710406..711587	+	393	21910186	-	SpyM3_0650	-	hypothetical protein
651	 39.42	0	711577..712824	+	415	21910187	-	SpyM3_0651	-	hypothetical protein
652	 40.05	0	712883..714535	-	550	21910188	-	SpyM3_0652	-	putative fibronectin-binding protein-like protein A
653	 38.34	0	714889..715887	+	332	21910189	-	SpyM3_0653	-	putative ABC transporter substrate-binding protein
654	 31.05	-2	715838..716056	+	72	21910190	-	SpyM3_0654	-	hypothetical protein
655	 36.21	0	716232..717101	+	289	21910191	-	SpyM3_0655	-	putative ABC transporter membrane-spanning permease
656	 37.55	0	717098..717856	+	252	21910192	-	SpyM3_0656	-	ABC transporter ATP-binding protein
657	 38.57	0	718060..719721	+	553	21910193	-	SpyM3_0657	-	Zn-dependent hydrolase
658	 41.09	0	719854..720639	+	261	21910194	estA	SpyM3_0658	-	putative tributyrin esterase
659	 35.47	0	720669..720995	+	108	21910195	-	SpyM3_0659	-	hypothetical protein
660	 40.88	0	721041..722948	+	635	21910196	-	SpyM3_0660	-	ABC transporter ATP-binding protein
661	 41.59	0	723233..724201	+	322	21910197	acoA	SpyM3_0661	-	putative acetoin dehydrogenase (TPP-dependent) alpha chain
662	 42.42	+1	724257..725258	+	333	21910198	acoB	SpyM3_0662	-	putative acetoin dehydrogenase (TPP-dependent) beta chain
663	 42.77	+1	725443..726852	+	469	21910199	acoC	SpyM3_0663	-	branched-chain alpha-keto acid dehydrogenase subunit E2
664	 41.50	0	727183..728946	+	587	21910200	acoL	SpyM3_0664	-	putative dihydrolipoamide dehydrogenase component E3
665	 35.93	0	729429..731852	-	807	21910201	hylA	SpyM3_0665	-	extracellular hyaluronate lyase
666	 37.47	0	732085..733074	+	329	21910202	-	SpyM3_0666	-	putative lipoate-protein ligase
667	 36.62	0	733183..733974	-	263	21910203	cobQ	SpyM3_0667	-	putative cobyric acid synthase
668	 37.97	0	733974..735311	-	445	21910204	murC	SpyM3_0668	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.