IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
515	 35.67	0	569673..570485	+	270	21910051	-	SpyM3_0515	-	putative ABC transporter
516	 36.72	0	570626..570802	+	58	21910052	rpsU	SpyM3_0516	-	30S ribosomal protein S21
517	 35.26	0	570930..571292	-	120	21910053	mscL	SpyM3_0517	-	putative large conductance mechanosensitive channel
518	 38.42	0	571467..573236	+	589	21910054	dnaG	SpyM3_0518	-	DNA primase
519	 38.65	0	573245..574354	+	369	21910055	rpoD	SpyM3_0519	-	RNA polymerase sigma factor RpoD
520	 39.82	0	574590..574928	+	112	21910056	-	SpyM3_0520	-	hypothetical protein
521	 40.35	0	575066..575920	+	284	21910057	rmlD	SpyM3_0521	-	putative dTDP-4-keto-L-rhamnose reductase
522	 39.31	0	576039..577193	+	384	21910058	rgpAc	SpyM3_0522	-	hypothetical protein
523	 37.41	0	577183..578115	+	310	21910059	rgpBc	SpyM3_0523	-	alpha-L-Rha alpha-1,3-L-rhamnosyltransferase
524	 33.96	-1	578118..578921	+	267	21910060	rgpCc	SpyM3_0524	-	putative ABC-transporter (permease protein)
525	 35.24	0	578921..580126	+	401	21910061	rgpDc	SpyM3_0525	-	ABC transporter ATP-binding protein
526	 32.24	-1	580151..581158	+	335	21910062	rgpEc	SpyM3_0526	-	putative glycosyltransferase
527	 31.67	-1	581155..582900	+	581	21910063	rgpFc	SpyM3_0527	-	hypothetical protein
528	 32.04	-1	582897..585371	+	824	21910064	-	SpyM3_0528	-	hypothetical protein
529	 35.92	0	585550..586245	+	231	21910065	-	SpyM3_0529	-	putative glycosyl transferase
530	 27.19	-2	586247..586588	+	113	21910066	-	SpyM3_0530	-	hypothetical protein
531	 29.99	-2	586581..587867	+	428	21910067	-	SpyM3_0531	-	hypothetical protein
532	 29.99	-2	587848..589344	+	498	21910068	-	SpyM3_0532	-	hypothetical protein
533	 38.81	0	589438..590661	+	407	21910069	pepT	SpyM3_0533	-	peptidase T
534	 32.31	-1	590702..591190	+	162	21910070	-	SpyM3_0534	-	putative pore-forming peptide
535	 37.37	0	591177..591374	-	65	21910071	-	SpyM3_0535	-	putative ferredoxin
536	 37.95	0	591424..591900	+	158	21910072	-	SpyM3_0536	-	hypothetical protein
537	 40.09	0	591915..592595	+	226	21910073	cmk	SpyM3_0537	-	cytidylate kinase
538	 37.66	0	592757..593287	+	176	21910074	infC	SpyM3_0538	-	translation initiation factor IF-3
539	 42.42	+1	593329..593526	+	65	21910075	rpmI	SpyM3_0539	-	50S ribosomal protein L35
540	 41.67	0	593585..593944	+	119	21910076	rplT	SpyM3_0540	-	50S ribosomal protein L20
541	 35.05	0	594235..596445	-	736	21910077	-	SpyM3_0541	-	hypothetical protein
542	 37.03	0	596553..597716	+	387	21910078	-	SpyM3_0542	-	hypothetical protein
543	 37.26	0	597713..598399	+	228	21910079	aroD	SpyM3_0543	-	3-dehydroquinate dehydratase
544	 41.99	0	598493..599659	+	388	161485750	aroF	SpyM3_0544	-	chorismate synthase
545	 39.47	0	599720..600061	+	113	21910081	-	SpyM3_0545	-	hypothetical protein
546	 43.39	+1	600282..601634	+	450	21910082	gor	SpyM3_0546	-	glutathione reductase
547	 40.77	0	601714..602991	-	425	21910083	folC.2	SpyM3_0547	-	putative folyl-polyglutamate synthetase
548	 41.50	0	603021..603461	-	146	21910084	-	SpyM3_0548	-	hypothetical protein
549	 41.29	0	603696..604838	+	380	21910085	nifS	SpyM3_0549	-	putative iron-sulfur cofactor synthesis protein
550	 41.82	0	604910..606064	+	384	21910086	thiI	SpyM3_0550	-	thiamine biosynthesis protein ThiI
551	 37.56	0	606213..607394	+	393	21910087	-	SpyM3_0551	-	hypothetical protein
552	 39.05	0	607608..607922	+	104	21910088	rplU	SpyM3_0552	-	50S ribosomal protein L21
553	 37.00	0	607934..608260	+	108	21910089	-	SpyM3_0553	-	hypothetical protein
554	 42.18	0	608288..608581	+	97	21910090	rpmA	SpyM3_0554	-	50S ribosomal protein L27
555	 35.96	0	608939..609853	+	304	21910091	-	SpyM3_0555	-	putative capsular polysaccharide biosynthesis regulatory protein
556	 36.17	0	609850..610308	+	152	21910092	lsp	SpyM3_0556	-	putative prolipoprotein signal peptidase
557	 41.53	0	610298..611188	+	296	21910093	-	SpyM3_0557	-	putative ribosomal large subunit pseudouridine synthase
558	 41.76	0	611583..612104	+	173	21910094	pyrR	SpyM3_0558	-	pyrimidine regulatory protein PyrR
559	 38.77	0	612165..613379	+	404	21910095	pyrP	SpyM3_0559	-	putative uracil permease
560	 39.64	0	613440..614375	+	311	21910096	pyrB	SpyM3_0560	-	aspartate carbamoyltransferase catalytic subunit
561	 40.07	0	614419..615501	+	360	21910097	carA	SpyM3_0561	-	carbamoyl phosphate synthase small subunit
562	 38.02	0	615747..618923	+	1058	161485749	carB	SpyM3_0562	-	carbamoyl phosphate synthase large subunit
563	 36.32	0	619129..620400	+	423	21910099	-	SpyM3_0563	-	hypothetical protein
564	 35.37	0	620424..621110	+	228	21910100	-	SpyM3_0564	-	ABC transporter ATP-binding protein
565	 35.63	0	621122..622342	+	406	21910101	-	SpyM3_0565	-	ABC transporter permease
566	 31.72	-1	622596..624329	+	577	21910102	-	SpyM3_0566	-	putative glycerophosphodiester phosphodiesterase
567	 38.83	0	624456..624728	+	90	21910103	rpsP	SpyM3_0567	-	30S ribosomal protein S16
568	 35.00	0	624738..624977	+	79	21910104	-	SpyM3_0568	-	RNA binding protein
569	 35.93	0	625937..628936	+	999	21910105	-	SpyM3_0569	-	putative surface antigen
570	 36.82	0	628956..629357	+	133	21910106	-	SpyM3_0570	-	hypothetical protein
571	 33.90	-1	629537..630412	-	291	21910107	czcD	SpyM3_0571	-	putative cation-efflux system membrane protein
572	 29.89	-2	630548..631069	+	173	21910108	-	SpyM3_0572	-	hypothetical protein
573	 37.76	0	631284..631802	+	172	21910109	rimM	SpyM3_0573	-	16S rRNA-processing protein
574	 41.26	0	631792..632523	+	243	21910110	trmD	SpyM3_0574	-	tRNA (guanine-N(1)-)-methyltransferase
575	 37.26	0	632523..633515	+	330	21910111	-	SpyM3_0575	-	putative thioredoxin reductase
576	 39.75	0	633693..634751	+	352	21910112	-	SpyM3_0576	-	regulatory protein
577	 40.26	0	634764..635687	+	307	21910113	apbA	SpyM3_0577	-	2-dehydropantoate 2-reductase
578	 36.13	0	635943..636656	+	237	21910114	fruR	SpyM3_0578	-	putative fructose operon transcriptional repressor
579	 40.81	0	636776..637564	+	262	21910115	fruK	SpyM3_0579	-	putative fructose-1-phosphate kinase
580	 41.60	0	637561..639507	+	648	21910116	fruA	SpyM3_0580	-	PTS system, fructose-specific IIABC component
581	 37.21	0	639606..640199	+	197	21910117	-	SpyM3_0581	-	putative peptidoglycan hydrolase
582	 38.70	0	640426..641058	+	210	21910118	-	SpyM3_0582	-	putative peptidoglycan hydrolase
583	 38.04	0	642015..643034	-	339	21910119	-	SpyM3_0583	-	hypothetical protein
584	 41.24	0	643539..643715	+	58	21910120	-	SpyM3_0584	-	hypothetical protein
585	 35.17	0	643943..644323	+	126	21910121	-	SpyM3_0585	-	hypothetical protein
586	 36.75	0	644323..645171	+	282	21910122	-	SpyM3_0586	-	hypothetical protein
587	 39.95	0	645296..646504	+	402	21910123	papS	SpyM3_0587	-	tRNA CCA-pyrophosphorylase
588	 39.40	0	646501..648378	+	625	21910124	-	SpyM3_0588	-	putative ABC transporter ATP-binding protein
589	 30.72	-2	648882..649034	+	50	21910125	-	SpyM3_0589	-	hypothetical protein
590	 35.52	0	649290..649700	+	136	21910126	fms	SpyM3_0590	-	peptide deformylase
591	 35.72	0	649782..651794	-	670	21910127	-	SpyM3_0591	-	5'-nucleotidase
592	 35.48	0	652014..652664	+	216	21910128	-	SpyM3_0592	-	GTP pyrophosphokinase
593	 34.68	-1	652667..653335	+	222	21910129	-	SpyM3_0593	-	putative two-component response regulator
594	 34.87	-1	653344..654576	+	410	21910130	-	SpyM3_0594	-	putative putative two-component sensory transduction histidine kinase
595	 42.66	+1	654870..655748	+	292	21910131	mvaK1	SpyM3_0595	-	mevalonate kinase
596	 40.86	0	655811..656674	+	287	21910132	mvaD	SpyM3_0596	-	mevalonate diphosphate decarboxylase
597	 42.86	+1	656667..657674	+	335	21910133	mvaK2	SpyM3_0597	-	phosphomevalonate kinase
598	 42.12	0	657667..658656	+	329	21910134	-	SpyM3_0598	-	isopentenyl pyrophosphate isomerase
599	 40.06	0	658886..660163	-	425	21910135	mvaS.1	SpyM3_0599	-	putative 3-hydroxy-3-methylglutaryl-coenzyme A
600	 37.59	0	660150..661325	-	391	21910136	mvaS.2	SpyM3_0600	-	putative 3-hydroxy-3-methylglutaryl-coenzyme A synthase
601	 34.88	0	661534..662373	+	279	161485748	thyA	SpyM3_0601	-	thymidylate synthase
602	 36.75	0	662453..662950	+	165	21910138	dyr	SpyM3_0602	-	putative dihydrofolate reductase
603	 34.50	-1	662970..663140	+	56	21910139	-	SpyM3_0603	-	hypothetical protein
604	 38.70	0	663270..664499	+	409	21910140	clpX	SpyM3_0604	-	ATP-dependent protease ATP-binding subunit
605	 38.67	0	664509..665108	+	199	21910141	-	SpyM3_0605	-	GTPase EngB
606	 34.14	-1	665256..666002	+	248	21910142	-	SpyM3_0606	-	hypothetical protein
607	 38.48	0	666055..668154	-	699	21910143	clpL	SpyM3_0607	-	putative ATP-dependent Clp proteinase (ATP-binding subunit)
608	 42.84	+1	668534..669217	+	227	21910144	rpiA	SpyM3_0608	-	ribose-5-phosphate isomerase A
609	 42.49	+1	669294..670505	+	403	21910145	deoB	SpyM3_0609	-	phosphopentomutase
610	 41.04	0	670524..670964	+	146	21910146	arsC	SpyM3_0610	-	putative arsenate reductase
611	 41.36	0	670948..671757	+	269	21910147	punA	SpyM3_0611	-	purine nucleoside phosphorylase
612	 43.56	+1	672528..673133	+	201	21910148	deoD2	SpyM3_0612	-	putative purine nucleoside phosphorylase
613	 39.60	0	673261..673914	+	217	21910149	-	SpyM3_0613	-	putative histidine protein kinase
614	 40.20	0	673994..674779	-	261	21910150	cpsY	SpyM3_0614	-	putative transcriptional regulator
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.