IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
215	 40.28	0	248736..250706	+	656	21909751	oppA	SpyM3_0215	-	oligopeptide permease
216	 36.93	0	250771..252273	+	500	21909752	oppB	SpyM3_0216	-	putative oligopeptide permease
217	 37.22	0	252273..253199	+	308	21909753	oppC	SpyM3_0217	-	putative oligopeptide permease
218	 39.96	0	253208..254278	+	356	21909754	oppD	SpyM3_0218	-	putative oligopeptide ABC transporter, ATP-binding protein
219	 37.77	0	254271..255194	+	307	21909755	oppF	SpyM3_0219	-	putative oligopeptide ABC transporter, ATP-binding protein
220	 37.45	0	261586..262071	+	161	21909756	comX.1	SpyM3_0220	-	putative transcriptional regulator ComX1
221	 38.13	0	262681..263097	+	138	21909757	-	SpyM3_0221	-	IS1548 transposase
222	 37.94	0	263078..263815	+	245	21909758	-	SpyM3_0222	-	IS1548 transposase
223	 36.75	0	263921..264505	+	194	21909759	-	SpyM3_0223	-	hypothetical protein
224	 37.98	0	264505..265623	+	372	21909760	-	SpyM3_0224	-	GTP-binding protein YqeH
225	 34.30	-1	265648..265956	+	102	21909761	-	SpyM3_0225	-	hypothetical protein
226	 39.34	0	266025..266657	+	210	21909762	nadD	SpyM3_0226	-	nicotinic acid mononucleotide adenylyltransferase
227	 40.40	0	266654..267247	+	197	21909763	-	SpyM3_0227	-	hypothetical protein
228	 38.62	0	267247..267624	+	125	21909764	-	SpyM3_0228	-	iojap protein family
229	 38.98	0	267672..268415	+	247	21909765	-	SpyM3_0229	-	hypothetical protein
230	 36.13	0	268637..269743	+	368	21909766	-	SpyM3_0230	-	hypothetical protein
231	 38.63	0	270225..270941	+	238	21909767	-	SpyM3_0231	-	hypothetical protein
232	 38.55	0	271144..271986	+	280	21909768	atmA	SpyM3_0232	-	ABC transporter substrate-binding protein
233	 36.88	0	272310..273155	+	281	21909769	atmB	SpyM3_0233	-	ABC transporter substrate-binding protein
234	 39.15	0	273405..274469	+	354	21909770	atmD	SpyM3_0234	-	ABC transporter ATP-binding protein
235	 37.09	0	274470..275162	+	230	21909771	atmE	SpyM3_0235	-	ABC transporter permease
236	 36.98	0	275216..276586	-	456	21909772	braB	SpyM3_0236	-	putative branched-chain amino acid transport protein
237	 38.16	0	276895..278034	+	379	21909773	-	SpyM3_0237	-	serine/threonine transporter SstT
238	 37.63	0	278089..278763	-	224	21909774	-	SpyM3_0238	-	hypothetical protein
239	 38.36	0	278773..280164	-	463	21909775	-	SpyM3_0239	-	putative potassium uptake protein
240	 38.10	0	280233..280946	-	237	21909776	gidB	SpyM3_0240	-	glucose-inhibited division protein B
241	 36.20	0	281096..281653	+	185	21909777	lemA	SpyM3_0241	-	putative cytoplasmic membrane protein
242	 40.58	0	281700..282596	+	298	21909778	htpX	SpyM3_0242	-	heat shock protein HtpX
243	 37.45	0	282830..283363	+	177	21909779	-	SpyM3_0243	-	hypothetical protein
244	 38.57	0	283631..284317	+	228	21909780	csrR	SpyM3_0244	-	two-component response regulator
245	 35.53	0	284323..285825	+	500	21909781	csrS	SpyM3_0245	-	two-component sensory transduction histidine kinase
246	 38.79	0	286040..286534	+	164	21909782	-	SpyM3_0246	-	transcriptional regulator NrdR
247	 36.99	0	286518..287693	+	391	21909783	dnaB	SpyM3_0247	-	putative chromosome replication initiation protein/membrane attachment protein
248	 41.20	0	287694..288596	+	300	21909784	dnaI	SpyM3_0248	-	primosomal protein DnaI
249	 42.87	+1	288659..289969	+	436	21909785	engA	SpyM3_0249	-	GTP-binding protein EngA
250	 36.66	0	290176..293274	+	1032	21909786	snf	SpyM3_0250	-	putative SNF helicase
251	 36.32	0	293518..294120	+	200	21909787	-	SpyM3_0251	-	hypothetical protein
252	 37.62	0	294160..295488	+	442	21909788	murC	SpyM3_0252	-	UDP-N-acetylmuramate--L-alanine ligase
253	 39.13	0	295534..296016	+	160	21909789	-	SpyM3_0253	-	putative arylalkylamine n-acetyltransferase
254	 36.84	0	296134..297702	+	522	21909790	-	SpyM3_0254	-	putative aminodeoxychorismate lyase
255	 37.89	0	297775..298257	+	160	21909791	greA	SpyM3_0255	-	transcription elongation factor GreA
256	 40.15	0	298881..299804	-	307	21909792	-	SpyM3_0256	-	OxaA-like protein precursor
257	 37.28	0	299886..300164	-	92	21909793	-	SpyM3_0257	-	putative acylphosphate phosphohydrolase
258	 42.14	0	300424..301161	+	245	21909794	-	SpyM3_0258	-	23S rRNA methyltransferase
259	 40.30	0	301227..301700	+	157	21909795	-	SpyM3_0259	-	hypothetical protein
260	 36.81	0	301715..302404	+	229	21909796	-	SpyM3_0260	-	hypothetical protein
261	 36.63	0	302582..302824	+	80	21909797	-	SpyM3_0261	-	hypothetical protein
262	 40.25	0	303002..303796	+	264	21909798	glr	SpyM3_0262	-	glutamate racemase
263	 41.95	0	303793..304779	+	328	21909799	-	SpyM3_0263	-	fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein
264	 39.27	0	304758..305279	+	173	21909800	-	SpyM3_0264	-	putative phosphoesterase
265	 34.20	-1	305276..305737	+	153	21909801	-	SpyM3_0265	-	CBS domain containing protein
266	 32.66	-1	305734..306480	+	248	21909802	xerD	SpyM3_0266	-	site-specific tyrosine recombinase XerD-like protein
267	 35.18	0	306480..307184	+	234	21909803	scpA	SpyM3_0267	-	segregation and condensation protein A
268	 38.22	0	307181..307732	+	183	21909804	scpB	SpyM3_0268	-	segregation and condensation protein B
269	 39.42	0	307852..308574	+	240	21909805	-	SpyM3_0269	-	putative ribosomal large subunit pseudouridine synthase
270	 34.47	-1	308571..308834	+	87	21909806	-	SpyM3_0270	-	hypothetical protein
271	 37.34	0	309012..309560	+	182	21909807	-	SpyM3_0271	-	23S rRNA methyltransferase
272	 31.56	-1	309870..310433	+	187	21909808	-	SpyM3_0272	-	hypothetical protein
273	 34.10	-1	310435..311088	+	217	21909809	-	SpyM3_0273	-	putative phosphatase
274	 38.76	0	311381..312301	+	306	21909810	-	SpyM3_0274	-	hypothetical protein
275	 40.54	0	312340..312894	+	184	21909811	-	SpyM3_0275	-	SAM-dependent methyltransferase
276	 38.95	0	313027..314361	+	444	21909812	hlyX	SpyM3_0276	-	putative hemolysin
277	 38.13	0	314439..315230	+	263	21909813	pflC	SpyM3_0277	-	putative pyruvate formate-lyase activating enzyme
278	 40.34	0	315355..316296	+	313	21909814	-	SpyM3_0278	-	putative manganese-dependent inorganic pyrophosphatase
279	 39.91	0	316372..317025	+	217	21909815	-	SpyM3_0279	-	hypothetical protein
280	 39.12	0	317070..318071	-	333	21909816	fhuG.1	SpyM3_0280	-	putative ferrichrome ABC transporter (permease)
281	 42.07	0	318068..319120	-	350	21909817	fhuB	SpyM3_0281	-	putative ferrichrome ABC transporter (permease)
282	 37.51	0	319110..320042	-	310	21909818	fhuD.1	SpyM3_0282	-	putative ferrichrome ABC transporter (ferrichrome-binding protein)
283	 39.34	0	320068..320850	-	260	21909819	fhuC.1	SpyM3_0283	-	putative ferrichrome ABC transporter ATP-binding protein
284	 41.36	0	321096..322541	-	481	21909820	murE	SpyM3_0284	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
285	 40.12	0	322629..324263	+	544	21909821	-	SpyM3_0285	-	putative polysaccharide biosynthesis protein
286	 40.95	0	324431..325060	+	209	21909822	upp	SpyM3_0286	-	uracil phosphoribosyltransferase
287	 42.13	0	325283..325873	+	196	21909823	clpP	SpyM3_0287	-	ATP-dependent Clp protease proteolytic subunit
288	 33.33	-1	326365..326640	+	91	21909824	-	SpyM3_0288	-	hypothetical protein
289	 41.67	0	326889..327524	+	211	21909825	tdk	SpyM3_0289	-	thymidylate kinase
290	 39.38	0	327542..328417	+	291	21909826	-	SpyM3_0290	-	DNA polymerase III subunit delta'
291	 33.02	-1	329081..329404	+	107	21909827	-	SpyM3_0291	-	DNA replication intiation control protein YabA
292	 42.25	0	329409..330272	+	287	21909828	-	SpyM3_0292	-	putative tetrapyrrole methylase family protein
293	 36.13	0	330299..330691	+	130	21909829	-	SpyM3_0293	-	hypothetical protein
294	 45.40	+1	330738..331367	-	209	21909830	-	SpyM3_0294	-	putative copper homeostasis protein
295	 40.34	0	331665..332021	+	118	21909831	-	SpyM3_0295	-	putative arsenate reductase
296	 43.12	+1	332095..332922	-	275	21909832	exoA	SpyM3_0296	-	putative 3'-exo-deoxyribonuclease
297	 42.13	0	333160..334341	+	393	21909833	lctO	SpyM3_0297	-	L-lactate oxidase
298	 41.67	0	334685..339553	+	1622	21909834	prtS	SpyM3_0298	-	putative cell envelope proteinase
299	 40.57	0	340301..341032	+	243	21909835	-	SpyM3_0299	-	hypothetical protein
300	 44.19	+1	341275..343272	+	665	21909836	metG	SpyM3_0300	-	methionyl-tRNA synthetase
301	 43.20	+1	343766..344779	+	337	21909837	nrdF	SpyM3_0301	-	ribonucleotide-diphosphate reductase subunit beta
302	 41.72	0	344783..345271	+	162	21909838	nrdI	SpyM3_0302	-	ribonucleotide reductase stimulatory protein
303	 45.67	+1	345238..347418	+	726	21909839	nrdE.2	SpyM3_0303	-	ribonucleotide-diphosphate reductase subunit alpha
304	 51.13	+2	347580..348332	-	250	21909840	-	SpyM3_0304	-	hypothetical protein
305	 41.78	0	348790..349215	+	141	21909841	-	SpyM3_0305	-	hypothetical protein
306	 47.62	+2	349406..349657	+	83	21909842	-	SpyM3_0306	-	hypothetical protein
307	 34.27	-1	349822..350352	-	176	21909843	-	SpyM3_0307	-	hypothetical protein
308	 42.62	+1	350711..350947	+	78	21909844	-	SpyM3_0308	-	hypothetical protein
309	 44.21	+1	350940..351638	+	232	21909845	fabG	SpyM3_0309	-	3-ketoacyl-(acyl-carrier-protein) reductase
310	 41.98	0	351714..352673	+	319	21909846	-	SpyM3_0310	-	NAD-dependent oxidoreductase
311	 42.30	0	353006..354343	+	445	21909847	glpT	SpyM3_0311	-	putative glycerol-3-phosphate transporter
312	 43.17	+1	354516..355898	+	460	21909848	glmU	SpyM3_0312	-	putative UDP-N-acetylglucosamine pyrophosphorylase
313	 40.54	0	355929..356483	+	184	21909849	-	SpyM3_0313	-	hypothetical protein
314	 36.51	0	356483..356734	+	83	21909850	-	SpyM3_0314	-	hypothetical protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.