IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
168	 46.99	+2	198610..199107	+	165	21909704	-	SpyM3_0168	-	hypothetical protein
169	 38.12	0	199238..199948	+	236	21909705	-	SpyM3_0169	-	hypothetical protein
170	 41.22	0	200131..201576	+	481	21909706	gltX	SpyM3_0170	-	glutamyl-tRNA synthetase
171	 33.18	-1	201971..203317	+	448	21909707	-	SpyM3_0171	-	putative histidine kinase
172	 31.09	-2	203314..203892	+	192	21909708	-	SpyM3_0172	-	putative histidine kinase
173	 33.19	-1	203913..204593	+	226	21909709	-	SpyM3_0173	-	putative histidine kinase
174	 35.76	0	204597..205337	+	246	21909710	-	SpyM3_0174	-	putative response regulator
175	 38.06	0	205877..206236	+	119	21909711	rnpA	SpyM3_0175	-	ribonuclease P
176	 40.46	0	206202..207029	+	275	21909712	-	SpyM3_0176	-	hypothetical protein
177	 41.42	0	207041..207955	+	304	21909713	-	SpyM3_0177	-	hypothetical protein
178	 44.44	+1	208270..208404	+	44	21909714	rpmH	SpyM3_0178	-	50S ribosomal protein L34
179	 44.96	+1	208678..209382	+	234	21909715	-	SpyM3_0179	-	N-acetylmannosamine-6-phosphate 2-epimerase
180	 39.94	0	209431..210489	+	352	21909716	-	SpyM3_0180	-	N-acetylneuraminate-binding protein
181	 36.56	0	210565..210750	+	61	21909717	-	SpyM3_0181	-	putative sugar transporter sugar binding lipoprotein
182	 39.10	0	210875..211741	+	288	21909718	-	SpyM3_0182	-	N-acetylneuraminate transport system permease protein
183	 41.28	0	211754..212584	+	276	21909719	-	SpyM3_0183	-	N-acetylneuraminate transport system permease protein
184	 39.06	0	212741..213403	+	220	21909720	-	SpyM3_0184	-	hypothetical protein
185	 43.50	+1	213415..214329	+	304	21909721	nanH	SpyM3_0185	-	N-acetylneuraminate lyase
186	 41.64	0	214351..215289	+	312	21909722	-	SpyM3_0186	-	putative glucose kinase
187	 38.63	0	215400..216230	-	276	21909723	-	SpyM3_0187	-	putative phosphosugar-binding transcriptional regulator
188	 42.68	+1	216419..217306	+	295	21909724	-	SpyM3_0188	-	hypothetical protein
189	 45.35	+1	217278..217868	+	196	21909725	-	SpyM3_0189	-	hypothetical protein
190	 42.04	0	217982..218854	+	290	21909726	ksgA	SpyM3_0190	-	dimethyladenosine transferase
191	 43.07	+1	219279..220151	+	290	161485754	-	SpyM3_0191	-	ribosome-associated GTPase
192	 43.89	+1	220161..220823	+	220	21909728	rpe	SpyM3_0192	-	ribulose-phosphate 3-epimerase
193	 40.92	0	220816..221448	+	210	21909729	-	SpyM3_0193	-	hypothetical protein
194	 41.12	0	221450..222721	+	423	21909730	-	SpyM3_0194	-	hypothetical protein
195	 39.83	0	222711..223649	+	312	21909731	cbf	SpyM3_0195	-	CMP-binding factor
196	 37.26	0	223916..224755	+	279	21909732	purR	SpyM3_0196	-	purine operon repressor
197	 39.32	0	224746..227367	+	873	21909733	prgA	SpyM3_0197	-	putative surface exclusion protein
198	 43.96	+1	227575..227988	+	137	21909734	rpsL	SpyM3_0198	-	30S ribosomal protein S12
199	 43.74	+1	228009..228479	+	156	21909735	rpsG	SpyM3_0199	-	30S ribosomal protein S7
200	 42.91	+1	228964..231042	+	692	21909736	fusA	SpyM3_0200	-	elongation factor G
201	 41.25	0	231383..232393	+	336	21909737	plr	SpyM3_0201	-	glyceraldehyde-3-phosphate dehydrogenase
202	 40.76	0	232877..233617	-	246	21909738	-	SpyM3_0202	-	putative amino acid ABC transporter ATP-binding protein
203	 42.70	+1	233610..235178	-	522	21909739	-	SpyM3_0203	-	putative glutamine-binding periplasmic protein
204	 40.65	0	235376..237301	+	641	21909740	-	SpyM3_0204	-	hypothetical protein
205	 37.26	0	237367..238206	+	279	21909741	uppP	SpyM3_0205	-	undecaprenyl pyrophosphate phosphatase
206	 37.10	0	238424..239113	+	229	21909742	mecA	SpyM3_0206	-	adaptor protein
207	 37.53	0	239171..240289	+	372	21909743	rgpG	SpyM3_0207	-	putative polysacharide biosynthesis protein
208	 41.12	0	240411..241181	+	256	21909744	-	SpyM3_0208	-	putative ABC transporter, ATP-binding protein
209	 42.68	+1	241276..242538	+	420	21909745	-	SpyM3_0209	-	hypothetical protein
210	 42.95	+1	242569..243795	+	408	21909746	-	SpyM3_0210	-	putative aminotransferase
211	 42.50	+1	243782..244261	+	159	21909747	-	SpyM3_0211	-	hypothetical protein
212	 40.38	0	244254..245672	+	472	21909748	-	SpyM3_0212	-	hypothetical protein
213	 37.14	0	245824..247005	-	393	21909749	-	SpyM3_0213	-	putative DD-carboxypeptidase
214	 35.69	0	247173..248405	-	410	21909750	dacA	SpyM3_0214	-	putative D-alanyl-D-alanine carboxypeptidase
215	 40.28	0	248736..250706	+	656	21909751	oppA	SpyM3_0215	-	oligopeptide permease
216	 36.93	0	250771..252273	+	500	21909752	oppB	SpyM3_0216	-	putative oligopeptide permease
217	 37.22	0	252273..253199	+	308	21909753	oppC	SpyM3_0217	-	putative oligopeptide permease
218	 39.96	0	253208..254278	+	356	21909754	oppD	SpyM3_0218	-	putative oligopeptide ABC transporter, ATP-binding protein
219	 37.77	0	254271..255194	+	307	21909755	oppF	SpyM3_0219	-	putative oligopeptide ABC transporter, ATP-binding protein
220	 37.45	0	261586..262071	+	161	21909756	comX.1	SpyM3_0220	-	putative transcriptional regulator ComX1
221	 38.13	0	262681..263097	+	138	21909757	-	SpyM3_0221	-	IS1548 transposase
222	 37.94	0	263078..263815	+	245	21909758	-	SpyM3_0222	-	IS1548 transposase
223	 36.75	0	263921..264505	+	194	21909759	-	SpyM3_0223	-	hypothetical protein
224	 37.98	0	264505..265623	+	372	21909760	-	SpyM3_0224	-	GTP-binding protein YqeH
225	 34.30	-1	265648..265956	+	102	21909761	-	SpyM3_0225	-	hypothetical protein
226	 39.34	0	266025..266657	+	210	21909762	nadD	SpyM3_0226	-	nicotinic acid mononucleotide adenylyltransferase
227	 40.40	0	266654..267247	+	197	21909763	-	SpyM3_0227	-	hypothetical protein
228	 38.62	0	267247..267624	+	125	21909764	-	SpyM3_0228	-	iojap protein family
229	 38.98	0	267672..268415	+	247	21909765	-	SpyM3_0229	-	hypothetical protein
230	 36.13	0	268637..269743	+	368	21909766	-	SpyM3_0230	-	hypothetical protein
231	 38.63	0	270225..270941	+	238	21909767	-	SpyM3_0231	-	hypothetical protein
232	 38.55	0	271144..271986	+	280	21909768	atmA	SpyM3_0232	-	ABC transporter substrate-binding protein
233	 36.88	0	272310..273155	+	281	21909769	atmB	SpyM3_0233	-	ABC transporter substrate-binding protein
234	 39.15	0	273405..274469	+	354	21909770	atmD	SpyM3_0234	-	ABC transporter ATP-binding protein
235	 37.09	0	274470..275162	+	230	21909771	atmE	SpyM3_0235	-	ABC transporter permease
236	 36.98	0	275216..276586	-	456	21909772	braB	SpyM3_0236	-	putative branched-chain amino acid transport protein
237	 38.16	0	276895..278034	+	379	21909773	-	SpyM3_0237	-	serine/threonine transporter SstT
238	 37.63	0	278089..278763	-	224	21909774	-	SpyM3_0238	-	hypothetical protein
239	 38.36	0	278773..280164	-	463	21909775	-	SpyM3_0239	-	putative potassium uptake protein
240	 38.10	0	280233..280946	-	237	21909776	gidB	SpyM3_0240	-	glucose-inhibited division protein B
241	 36.20	0	281096..281653	+	185	21909777	lemA	SpyM3_0241	-	putative cytoplasmic membrane protein
242	 40.58	0	281700..282596	+	298	21909778	htpX	SpyM3_0242	-	heat shock protein HtpX
243	 37.45	0	282830..283363	+	177	21909779	-	SpyM3_0243	-	hypothetical protein
244	 38.57	0	283631..284317	+	228	21909780	csrR	SpyM3_0244	-	two-component response regulator
245	 35.53	0	284323..285825	+	500	21909781	csrS	SpyM3_0245	-	two-component sensory transduction histidine kinase
246	 38.79	0	286040..286534	+	164	21909782	-	SpyM3_0246	-	transcriptional regulator NrdR
247	 36.99	0	286518..287693	+	391	21909783	dnaB	SpyM3_0247	-	putative chromosome replication initiation protein/membrane attachment protein
248	 41.20	0	287694..288596	+	300	21909784	dnaI	SpyM3_0248	-	primosomal protein DnaI
249	 42.87	+1	288659..289969	+	436	21909785	engA	SpyM3_0249	-	GTP-binding protein EngA
250	 36.66	0	290176..293274	+	1032	21909786	snf	SpyM3_0250	-	putative SNF helicase
251	 36.32	0	293518..294120	+	200	21909787	-	SpyM3_0251	-	hypothetical protein
252	 37.62	0	294160..295488	+	442	21909788	murC	SpyM3_0252	-	UDP-N-acetylmuramate--L-alanine ligase
253	 39.13	0	295534..296016	+	160	21909789	-	SpyM3_0253	-	putative arylalkylamine n-acetyltransferase
254	 36.84	0	296134..297702	+	522	21909790	-	SpyM3_0254	-	putative aminodeoxychorismate lyase
255	 37.89	0	297775..298257	+	160	21909791	greA	SpyM3_0255	-	transcription elongation factor GreA
256	 40.15	0	298881..299804	-	307	21909792	-	SpyM3_0256	-	OxaA-like protein precursor
257	 37.28	0	299886..300164	-	92	21909793	-	SpyM3_0257	-	putative acylphosphate phosphohydrolase
258	 42.14	0	300424..301161	+	245	21909794	-	SpyM3_0258	-	23S rRNA methyltransferase
259	 40.30	0	301227..301700	+	157	21909795	-	SpyM3_0259	-	hypothetical protein
260	 36.81	0	301715..302404	+	229	21909796	-	SpyM3_0260	-	hypothetical protein
261	 36.63	0	302582..302824	+	80	21909797	-	SpyM3_0261	-	hypothetical protein
262	 40.25	0	303002..303796	+	264	21909798	glr	SpyM3_0262	-	glutamate racemase
263	 41.95	0	303793..304779	+	328	21909799	-	SpyM3_0263	-	fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein
264	 39.27	0	304758..305279	+	173	21909800	-	SpyM3_0264	-	putative phosphoesterase
265	 34.20	-1	305276..305737	+	153	21909801	-	SpyM3_0265	-	CBS domain containing protein
266	 32.66	-1	305734..306480	+	248	21909802	xerD	SpyM3_0266	-	site-specific tyrosine recombinase XerD-like protein
267	 35.18	0	306480..307184	+	234	21909803	scpA	SpyM3_0267	-	segregation and condensation protein A
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.