IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1741	 42.16	0	1761091..1761396	-	101	21911277	-	SpyM3_1741	-	hypothetical protein
1742	 39.60	0	1761398..1762594	-	398	21911278	speB	SpyM3_1742	-	pyrogenic exotoxin B
1743	 39.77	0	1762866..1763036	-	56	21911279	-	SpyM3_1743	-	hypothetical protein
1744	 32.15	-1	1763535..1764377	+	280	21911280	ropB	SpyM3_1744	-	putative transcription regulator
1745	 40.20	0	1764618..1765433	-	271	21911281	mf	SpyM3_1745	-	mitogenic factor 25K precursor
1746	 43.53	+1	1765796..1766305	+	169	21911282	-	SpyM3_1746	-	putative low temperature requirement C protein
1747	 44.90	+1	1766387..1767475	-	362	21911283	gldA	SpyM3_1747	-	glycerol dehydrogenase
1748	 42.60	+1	1767532..1768200	-	222	21911284	mipB	SpyM3_1748	-	fructose-6-phosphate aldolase
1749	 44.25	+1	1768213..1770630	-	805	21911285	pflD	SpyM3_1749	-	putative pyruvate formate-lyase
1750	 42.30	0	1770841..1772145	-	434	21911286	-	SpyM3_1750	-	PTS system, cellobiose-specific IIC component
1751	 39.48	0	1772155..1772463	-	102	21911287	-	SpyM3_1751	-	PTS system, cellobiose-specific IIB component
1752	 37.69	0	1772491..1772811	-	106	21911288	-	SpyM3_1752	-	PTS system, cellobiose-specific IIA component
1753	 41.69	0	1773099..1774079	-	326	21911289	-	SpyM3_1753	-	putative transcriptional regulator
1754	 40.83	0	1774095..1774841	-	248	21911290	-	SpyM3_1754	-	putative transcriptional regulator
1755	 42.25	0	1774967..1775740	+	257	21911291	-	SpyM3_1755	-	putative pyruvate formate-lyase activating enzyme
1756	 36.32	0	1775775..1775975	+	66	21911292	-	SpyM3_1756	-	hypothetical protein
1757	 35.03	0	1775977..1776153	-	58	21911293	secE	SpyM3_1757	-	preprotein translocase subunit SecE
1758	 40.47	0	1776368..1778638	-	756	21911294	pbp2A	SpyM3_1758	-	penicillin-binding protein 2a
1759	 40.42	0	1778743..1779123	-	126	21911295	-	SpyM3_1759	-	putative translation initiation inhibitor
1760	 40.10	0	1779614..1779805	+	63	21911296	-	SpyM3_1760	-	hypothetical protein
1761	 39.81	0	1779852..1780700	+	282	21911297	-	SpyM3_1761	-	putative ribosomal large subunit pseudouridine synthase
1762	 38.88	0	1780789..1782429	-	546	21911298	-	SpyM3_1762	-	hypothetical protein
1763	 39.67	0	1782676..1784175	+	499	21911299	-	SpyM3_1763	-	putative dipeptidase
1764	 36.70	0	1784898..1785164	-	88	21911300	-	SpyM3_1764	-	hypothetical protein
1765	 43.20	+1	1785415..1787046	-	543	21911301	groEL	SpyM3_1765	-	chaperonin GroEL
1766	 41.58	0	1787082..1787372	-	96	21911302	groES	SpyM3_1766	-	co-chaperonin GroES
1767	 40.00	0	1787550..1789994	-	814	21911303	clpC	SpyM3_1767	-	putative endopeptidase Clp ATP-binding chain C
1768	 39.61	0	1789994..1790455	-	153	21911304	ctsR	SpyM3_1768	-	putative transcriptional regulator
1769	 37.25	0	1790651..1790854	-	67	21911305	csp	SpyM3_1769	-	putative cold-shock protein
1770	 39.57	0	1791841..1792401	+	186	21911306	ahpC	SpyM3_1770	-	putative alkyl hydroperoxidase
1771	 43.84	+1	1792422..1793954	+	510	21911307	nox.3	SpyM3_1771	-	putative NADH oxidase/alkyl hydroperoxidase
1772	 41.71	0	1794012..1795277	-	421	21911308	hutI	SpyM3_1772	-	imidazolonepropionase
1773	 44.81	+1	1795569..1797599	+	676	21911309	hutU	SpyM3_1773	-	urocanate hydratase
1774	 44.22	+1	1797687..1798586	+	299	21911310	-	SpyM3_1774	-	glutamate formiminotransferase
1775	 43.86	+1	1798597..1799223	+	208	21911311	-	SpyM3_1775	-	formiminotetrahydrofolate cyclodeaminase
1776	 47.49	+2	1799241..1800914	+	557	21911312	fhs.2	SpyM3_1776	-	formate--tetrahydrofolate ligase
1777	 44.39	+1	1800936..1801532	+	198	21911313	-	SpyM3_1777	-	hypothetical protein
1778	 43.60	+1	1801752..1803095	+	447	21911314	-	SpyM3_1778	-	putative cationic amino acid transporter protein
1779	 45.53	+1	1803106..1804647	+	513	21911315	hutH	SpyM3_1779	-	histidine ammonia-lyase
1780	 44.88	+1	1804834..1805820	+	328	21911316	hutG	SpyM3_1780	-	formimidoylglutamase
1781	 41.11	0	1805851..1808925	-	1024	21911317	-	SpyM3_1781	-	putative regulatory protein
1782	 43.10	+1	1809229..1809996	+	255	21911318	rpsB	SpyM3_1782	-	30S ribosomal protein S2
1783	 42.17	0	1810130..1811170	+	346	21911319	tsf	SpyM3_1783	-	elongation factor Ts
1784	 41.93	0	1811336..1813231	-	631	21911320	pepO	SpyM3_1784	-	putative endopeptidase O
1785	 42.05	0	1813439..1815067	-	542	21911321	dexS	SpyM3_1785	-	putative dextran glucosidase
1786	 41.83	0	1815134..1817158	-	674	21911322	-	SpyM3_1786	-	putative PTS system enzyme II
1787	 39.08	0	1817369..1818082	+	237	21911323	-	SpyM3_1787	-	putative transcriptional repressor
1788	 46.25	+2	1818360..1818599	-	79	21911324	-	SpyM3_1788	-	hypothetical protein
1789	 42.88	+1	1818884..1819648	+	254	21911325	-	SpyM3_1789	-	hypothetical protein
1790	 43.31	+1	1819783..1820514	+	243	21911326	-	SpyM3_1790	-	hypothetical protein
1791	 40.49	0	1820688..1821302	-	204	21911327	nrdG	SpyM3_1791	-	putative anaerobic ribonucleotide reductase activator
1792	 41.62	0	1821317..1821811	-	164	21911328	-	SpyM3_1792	-	hypothetical protein
1793	 40.81	0	1821820..1822755	-	311	21911329	-	SpyM3_1793	-	putative oxidoreductase
1794	 37.97	0	1823112..1825310	-	732	21911330	nrdD	SpyM3_1794	-	anaerobic ribonucleoside triphosphate reductase
1795	 33.65	-1	1825408..1826967	-	519	21911331	-	SpyM3_1795	-	hypothetical protein
1796	 35.62	0	1827380..1827685	-	101	21911332	-	SpyM3_1796	-	hypothetical protein
1797	 38.20	0	1827697..1828107	-	136	21911333	-	SpyM3_1797	-	Holliday junction resolvase-like protein
1798	 35.19	0	1828113..1828382	-	89	21911334	-	SpyM3_1798	-	hypothetical protein
1799	 35.59	0	1828495..1828893	-	132	21911335	spxA	SpyM3_1799	-	transcriptional regulator Spx
1800	 41.28	0	1829184..1830164	-	326	21911336	recA	SpyM3_1800	-	recombinase A
1801	 41.59	0	1830409..1831680	-	423	21911337	cinA	SpyM3_1801	-	competence damage-inducible protein A
1802	 39.22	0	1831749..1832309	-	186	21911338	tag	SpyM3_1802	-	DNA-3-methyladenine glycosylase
1803	 39.87	0	1832319..1832915	-	198	21911339	ruvA	SpyM3_1803	-	Holliday junction DNA helicase motor protein
1804	 38.17	0	1832917..1834137	-	406	21911340	lmrP	SpyM3_1804	-	putative integral membrane protein
1805	 39.54	0	1834148..1836130	-	660	21911341	mutL	SpyM3_1805	-	DNA mismatch repair protein
1806	 40.22	0	1836259..1838814	-	851	21911342	mutS.2	SpyM3_1806	-	DNA mismatch repair protein
1807	 35.75	0	1838801..1839007	-	68	21911343	-	SpyM3_1807	-	hypothetical protein
1808	 40.18	0	1839150..1839587	-	145	21911344	ahrC	SpyM3_1808	-	putative arginine repressor
1809	 41.19	0	1839878..1841569	+	563	21911345	argS	SpyM3_1809	-	arginyl-tRNA synthetase
1810	 34.95	0	1841657..1841965	+	102	21911346	-	SpyM3_1810	-	hypothetical protein
1811	 39.52	0	1841992..1842864	-	290	21911347	-	SpyM3_1811	-	hypothetical protein
1812	 38.68	0	1842907..1843785	-	292	21911348	-	SpyM3_1812	-	hypothetical protein
1813	 39.49	0	1843805..1844746	-	313	21911349	-	SpyM3_1813	-	hypothetical protein
1814	 42.20	0	1844739..1846487	-	582	21911350	aspS	SpyM3_1814	-	aspartyl-tRNA synthetase
1815	 41.92	0	1846825..1848105	-	426	21911351	hisS	SpyM3_1815	-	histidyl-tRNA synthetase
1816	 41.53	0	1848325..1848507	+	60	21911352	rpmF	SpyM3_1816	-	50S ribosomal protein L32
1817	 34.00	-1	1848523..1848672	+	49	21911353	rpmG	SpyM3_1817	-	50S ribosomal protein L33
1818	 34.63	-1	1848953..1849567	+	204	21911354	cadD	SpyM3_1818	-	putative cadmium resistance protein
1819	 32.74	-1	1849579..1849917	+	112	21911355	cadX	SpyM3_1819	-	putative cadmium efflux system accessory protein
1820	 30.74	-2	1849968..1850891	+	307	21911356	-	SpyM3_1820	-	hypothetical protein
1821	 39.18	0	1850957..1851709	+	250	21911357	-	SpyM3_1821	-	hypothetical protein
1822	 37.98	0	1851706..1852308	+	200	21911358	-	SpyM3_1822	-	hypothetical protein
1823	 37.58	0	1852784..1852948	-	54	21911359	-	SpyM3_1823	-	hypothetical protein
1824	 25.16	-2	1853276..1853434	-	52	21911360	-	SpyM3_1824	-	hypothetical protein
1825	 37.60	0	1853519..1854361	+	280	21911361	-	SpyM3_1825	-	hypothetical protein
1826	 37.35	0	1854408..1854830	-	140	21911362	-	SpyM3_1826	-	hypothetical protein
1827	 37.18	0	1854961..1855116	-	51	21911363	-	SpyM3_1827	-	hypothetical protein
1828	 35.78	0	1855256..1855582	+	108	21911364	-	SpyM3_1828	-	hypothetical protein
1829	 43.37	+1	1855569..1856156	+	195	21911365	-	SpyM3_1829	-	hypothetical protein
1830	 38.70	0	1856153..1857232	+	359	21911366	-	SpyM3_1830	-	hypothetical protein
1831	 40.59	0	1857349..1859622	-	757	21911367	-	SpyM3_1831	-	hypothetical protein
1832	 32.77	-1	1859757..1860290	+	177	21911368	-	SpyM3_1832	-	TetR/AcrR family transcriptional regulator
1833	 41.34	0	1860444..1861055	-	203	21911369	rpsD	SpyM3_1833	-	30S ribosomal protein S4
1834	 32.60	-1	1861785..1862057	-	90	21911370	-	SpyM3_1834	-	hypothetical protein
1835	 39.04	0	1862074..1863441	-	455	21911371	dnaC	SpyM3_1835	-	replicative DNA helicase
1836	 34.44	-1	1863471..1863923	-	150	21911372	rplI	SpyM3_1836	-	50S ribosomal protein L9
1837	 34.29	-1	1863920..1865896	-	658	21911373	-	SpyM3_1837	-	hypothetical protein
1838	 39.76	0	1865986..1867884	-	632	21911374	gidA	SpyM3_1838	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1839	 35.85	0	1868008..1868325	-	105	21911375	-	SpyM3_1839	-	hypothetical protein
1840	 41.00	0	1869101..1870222	-	373	21911376	trmU	SpyM3_1840	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.