IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1693	 43.68	+1	1705366..1705713	-	115	21911229	-	SpyM3_1693	-	putative transport accessory protein
1694	 43.20	+1	1705855..1709352	-	1165	21911230	pulA	SpyM3_1694	-	putative pullulanase
1695	 43.62	+1	1709550..1711163	-	537	21911231	dexB	SpyM3_1695	-	putative dextran glucosidase
1696	 42.77	+1	1711292..1712425	-	377	21911232	msmK	SpyM3_1696	-	sugar ABC transporter ATP-binding protein
1697	 44.88	+1	1712723..1713571	-	282	21911233	lrp	SpyM3_1697	-	leucine-rich protein
1698	 39.30	0	1713931..1715253	+	440	21911234	ska	SpyM3_1698	-	streptokinase A precursor
1699	 38.36	0	1715202..1715360	-	52	21911235	-	SpyM3_1699	-	hypothetical protein
1700	 43.02	+1	1715351..1715794	-	147	21911236	dtd	SpyM3_1700	-	D-tyrosyl-tRNA deacylase
1701	 44.34	+1	1715809..1717971	-	720	21911237	relA	SpyM3_1701	-	(p)ppGpp synthetase
1702	 49.28	+2	1718280..1718555	-	91	21911238	sclA	SpyM3_1702	-	putative collagen-like protein
1703	 44.29	+1	1718706..1719125	-	139	21911239	sclA	SpyM3_1703	-	putative collagen-like protein
1704	 37.92	0	1719526..1720659	+	377	21911240	-	SpyM3_1704	-	IS1548 transposase
1705	 37.04	0	1720664..1720798	+	44	21911241	-	SpyM3_1705	-	hypothetical protein
1706	 46.79	+2	1720833..1721315	+	160	21911242	nrdI.1	SpyM3_1706	-	hypothetical protein
1707	 42.12	0	1721710..1722528	-	272	21911243	rgfB	SpyM3_1707	-	putative RgfB protein
1708	 44.81	+1	1722607..1724793	-	728	21911244	-	SpyM3_1708	-	PTS system, glucose-specific IIABC component
1709	 43.47	+1	1725155..1725904	-	249	21911245	-	SpyM3_1709	-	hypothetical protein
1710	 44.03	+1	1725904..1726857	-	317	161485734	prmA	SpyM3_1710	-	ribosomal protein L11 methyltransferase
1711	 40.28	0	1726928..1727359	-	143	21911247	-	SpyM3_1711	-	hypothetical protein
1712	 44.60	+1	1727670..1729355	+	561	21911248	pabP	SpyM3_1712	-	putative para-aminobenzoate synthetase
1713	 45.50	+1	1729388..1729954	+	188	21911249	trpG	SpyM3_1713	-	anthranilate synthase component II
1714	 43.58	+1	1729987..1731255	+	422	21911250	-	SpyM3_1714	-	recombination factor protein RarA
1715	 33.33	-1	1731889..1732158	+	89	21911251	-	SpyM3_1715	-	hypothetical protein
1716	 27.78	-2	1732119..1732514	+	131	21911252	-	SpyM3_1716	-	hypothetical protein
1717	 24.44	-2	1732931..1733065	-	44	21911253	-	SpyM3_1717	-	hypothetical protein
1718	 39.84	0	1733244..1734872	+	542	21911254	dppA	SpyM3_1718	-	surface lipoprotein DppA
1719	 40.28	0	1735099..1735962	+	287	21911255	dppB	SpyM3_1719	-	putative dipeptide ABC transporter, permease protein
1720	 39.42	0	1735959..1736780	+	273	21911256	dppC	SpyM3_1720	-	putative dipeptide ABC transporter, permease protein
1721	 38.93	0	1736792..1737595	+	267	21911257	dppD	SpyM3_1721	-	putative dipeptide ABC transporter, ATP-binding protein
1722	 38.44	0	1737579..1738205	+	208	21911258	dppE	SpyM3_1722	-	putative dipeptide ABC transporter, ATP-binding protein
1723	 36.32	0	1738287..1738487	-	66	21911259	-	SpyM3_1723	-	hypothetical protein
1724	 40.13	0	1738656..1741127	-	823	21911260	-	SpyM3_1724	-	histidine triad protein
1725	 40.39	0	1741140..1742060	-	306	21911261	lmb	SpyM3_1725	-	laminin-binding protein
1726	 41.85	0	1742323..1745832	-	1169	21911262	scpA	SpyM3_1726	-	C5A peptidase precursor
1727	 37.63	0	1746202..1747947	-	581	21911263	emm3	SpyM3_1727	-	antiphagocytic M protein, type 3
1728	 38.18	0	1748131..1749741	-	536	21911264	mga	SpyM3_1728	-	M protein trans-acting positive regulator, multi-gene activator
1729	 32.82	-1	1750129..1750323	+	64	21911265	-	SpyM3_1729	-	hypothetical protein
1730	 40.08	0	1750429..1750680	-	83	21911266	-	SpyM3_1730	-	hypothetical protein
1731	 44.69	+1	1750758..1752386	-	542	21911267	isp.1	SpyM3_1731	-	immunogenic secreted protein precursor
1732	 38.01	0	1752488..1753876	-	462	21911268	-	SpyM3_1732	-	putative histidine kinase
1733	 38.38	0	1753873..1754526	-	217	21911269	-	SpyM3_1733	-	putative two-component response regulator
1734	 37.93	0	1754620..1755837	-	405	21911270	-	SpyM3_1734	-	ABC transporter permease
1735	 39.41	0	1755850..1756524	-	224	21911271	-	SpyM3_1735	-	ABC transporter ATP-binding protein
1736	 39.80	0	1756511..1757779	-	422	21911272	-	SpyM3_1736	-	putative ATP-binding cassette transporter protein
1737	 34.57	-1	1758202..1758606	-	134	21911273	-	SpyM3_1737	-	hypothetical protein
1738	 40.74	0	1758633..1758929	-	98	21911274	-	SpyM3_1738	-	hypothetical protein
1739	 49.79	+2	1759173..1759409	+	78	21911275	-	SpyM3_1739	-	hypothetical protein
1740	 42.04	0	1759682..1760611	-	309	21911276	prsA	SpyM3_1740	-	foldase protein PrsA
1741	 42.16	0	1761091..1761396	-	101	21911277	-	SpyM3_1741	-	hypothetical protein
1742	 39.60	0	1761398..1762594	-	398	21911278	speB	SpyM3_1742	-	pyrogenic exotoxin B
1743	 39.77	0	1762866..1763036	-	56	21911279	-	SpyM3_1743	-	hypothetical protein
1744	 32.15	-1	1763535..1764377	+	280	21911280	ropB	SpyM3_1744	-	putative transcription regulator
1745	 40.20	0	1764618..1765433	-	271	21911281	mf	SpyM3_1745	-	mitogenic factor 25K precursor
1746	 43.53	+1	1765796..1766305	+	169	21911282	-	SpyM3_1746	-	putative low temperature requirement C protein
1747	 44.90	+1	1766387..1767475	-	362	21911283	gldA	SpyM3_1747	-	glycerol dehydrogenase
1748	 42.60	+1	1767532..1768200	-	222	21911284	mipB	SpyM3_1748	-	fructose-6-phosphate aldolase
1749	 44.25	+1	1768213..1770630	-	805	21911285	pflD	SpyM3_1749	-	putative pyruvate formate-lyase
1750	 42.30	0	1770841..1772145	-	434	21911286	-	SpyM3_1750	-	PTS system, cellobiose-specific IIC component
1751	 39.48	0	1772155..1772463	-	102	21911287	-	SpyM3_1751	-	PTS system, cellobiose-specific IIB component
1752	 37.69	0	1772491..1772811	-	106	21911288	-	SpyM3_1752	-	PTS system, cellobiose-specific IIA component
1753	 41.69	0	1773099..1774079	-	326	21911289	-	SpyM3_1753	-	putative transcriptional regulator
1754	 40.83	0	1774095..1774841	-	248	21911290	-	SpyM3_1754	-	putative transcriptional regulator
1755	 42.25	0	1774967..1775740	+	257	21911291	-	SpyM3_1755	-	putative pyruvate formate-lyase activating enzyme
1756	 36.32	0	1775775..1775975	+	66	21911292	-	SpyM3_1756	-	hypothetical protein
1757	 35.03	0	1775977..1776153	-	58	21911293	secE	SpyM3_1757	-	preprotein translocase subunit SecE
1758	 40.47	0	1776368..1778638	-	756	21911294	pbp2A	SpyM3_1758	-	penicillin-binding protein 2a
1759	 40.42	0	1778743..1779123	-	126	21911295	-	SpyM3_1759	-	putative translation initiation inhibitor
1760	 40.10	0	1779614..1779805	+	63	21911296	-	SpyM3_1760	-	hypothetical protein
1761	 39.81	0	1779852..1780700	+	282	21911297	-	SpyM3_1761	-	putative ribosomal large subunit pseudouridine synthase
1762	 38.88	0	1780789..1782429	-	546	21911298	-	SpyM3_1762	-	hypothetical protein
1763	 39.67	0	1782676..1784175	+	499	21911299	-	SpyM3_1763	-	putative dipeptidase
1764	 36.70	0	1784898..1785164	-	88	21911300	-	SpyM3_1764	-	hypothetical protein
1765	 43.20	+1	1785415..1787046	-	543	21911301	groEL	SpyM3_1765	-	chaperonin GroEL
1766	 41.58	0	1787082..1787372	-	96	21911302	groES	SpyM3_1766	-	co-chaperonin GroES
1767	 40.00	0	1787550..1789994	-	814	21911303	clpC	SpyM3_1767	-	putative endopeptidase Clp ATP-binding chain C
1768	 39.61	0	1789994..1790455	-	153	21911304	ctsR	SpyM3_1768	-	putative transcriptional regulator
1769	 37.25	0	1790651..1790854	-	67	21911305	csp	SpyM3_1769	-	putative cold-shock protein
1770	 39.57	0	1791841..1792401	+	186	21911306	ahpC	SpyM3_1770	-	putative alkyl hydroperoxidase
1771	 43.84	+1	1792422..1793954	+	510	21911307	nox.3	SpyM3_1771	-	putative NADH oxidase/alkyl hydroperoxidase
1772	 41.71	0	1794012..1795277	-	421	21911308	hutI	SpyM3_1772	-	imidazolonepropionase
1773	 44.81	+1	1795569..1797599	+	676	21911309	hutU	SpyM3_1773	-	urocanate hydratase
1774	 44.22	+1	1797687..1798586	+	299	21911310	-	SpyM3_1774	-	glutamate formiminotransferase
1775	 43.86	+1	1798597..1799223	+	208	21911311	-	SpyM3_1775	-	formiminotetrahydrofolate cyclodeaminase
1776	 47.49	+2	1799241..1800914	+	557	21911312	fhs.2	SpyM3_1776	-	formate--tetrahydrofolate ligase
1777	 44.39	+1	1800936..1801532	+	198	21911313	-	SpyM3_1777	-	hypothetical protein
1778	 43.60	+1	1801752..1803095	+	447	21911314	-	SpyM3_1778	-	putative cationic amino acid transporter protein
1779	 45.53	+1	1803106..1804647	+	513	21911315	hutH	SpyM3_1779	-	histidine ammonia-lyase
1780	 44.88	+1	1804834..1805820	+	328	21911316	hutG	SpyM3_1780	-	formimidoylglutamase
1781	 41.11	0	1805851..1808925	-	1024	21911317	-	SpyM3_1781	-	putative regulatory protein
1782	 43.10	+1	1809229..1809996	+	255	21911318	rpsB	SpyM3_1782	-	30S ribosomal protein S2
1783	 42.17	0	1810130..1811170	+	346	21911319	tsf	SpyM3_1783	-	elongation factor Ts
1784	 41.93	0	1811336..1813231	-	631	21911320	pepO	SpyM3_1784	-	putative endopeptidase O
1785	 42.05	0	1813439..1815067	-	542	21911321	dexS	SpyM3_1785	-	putative dextran glucosidase
1786	 41.83	0	1815134..1817158	-	674	21911322	-	SpyM3_1786	-	putative PTS system enzyme II
1787	 39.08	0	1817369..1818082	+	237	21911323	-	SpyM3_1787	-	putative transcriptional repressor
1788	 46.25	+2	1818360..1818599	-	79	21911324	-	SpyM3_1788	-	hypothetical protein
1789	 42.88	+1	1818884..1819648	+	254	21911325	-	SpyM3_1789	-	hypothetical protein
1790	 43.31	+1	1819783..1820514	+	243	21911326	-	SpyM3_1790	-	hypothetical protein
1791	 40.49	0	1820688..1821302	-	204	21911327	nrdG	SpyM3_1791	-	putative anaerobic ribonucleotide reductase activator
1792	 41.62	0	1821317..1821811	-	164	21911328	-	SpyM3_1792	-	hypothetical protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.