IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1611	 37.50	0	1612757..1613428	-	223	21911147	deoC	SpyM3_1611	-	putative deoxyribose-phosphate aldolase
1612	 36.24	0	1613458..1614660	-	400	21911148	nupC	SpyM3_1612	-	putative nucleoside transporter
1613	 40.64	0	1614681..1615460	-	259	21911149	udp	SpyM3_1613	-	putative uridine phosphorylase
1614	 36.36	0	1615701..1616459	+	252	21911150	-	SpyM3_1614	-	GntR family transcriptional regulator
1615	 44.81	+1	1616679..1616948	+	89	21911151	rpsN	SpyM3_1615	-	30S ribosomal protein S14
1616	 41.79	0	1617119..1618147	-	342	21911152	gcp	SpyM3_1616	-	O-sialoglycoprotein endopeptidase
1617	 34.21	-1	1618137..1618592	-	151	21911153	-	SpyM3_1617	-	putative ribosomal-protein-alanine acetyltransferase
1618	 39.77	0	1618564..1619262	-	232	21911154	-	SpyM3_1618	-	putative glycoprotein endopeptidase
1619	 37.66	0	1619546..1619776	+	76	21911155	-	SpyM3_1619	-	hypothetical protein
1620	 39.99	0	1619778..1621460	+	560	21911156	-	SpyM3_1620	-	Zn-dependent hydrolase
1621	 37.71	0	1621688..1623034	-	448	21911157	glnA	SpyM3_1621	-	putative glutamine synthetase
1622	 37.37	0	1623072..1623443	-	123	21911158	glnR	SpyM3_1622	-	putative transcriptional repressor of glutamine synthetase
1623	 30.62	-2	1623510..1624061	-	183	21911159	-	SpyM3_1623	-	hypothetical protein
1624	 41.94	0	1624324..1625520	-	398	21911160	pgk	SpyM3_1624	-	phosphoglycerate kinase
1625	 35.44	0	1625713..1626567	-	284	21911161	lppC	SpyM3_1625	-	putative acid phosphatase
1626	 40.74	0	1626797..1627687	-	296	21911162	-	SpyM3_1626	-	hypothetical protein
1627	 42.22	0	1627924..1629555	-	543	21911163	-	SpyM3_1627	-	hypothetical protein
1628	 37.43	0	1629588..1629953	-	121	21911164	asp	SpyM3_1628	-	putative alkaline-shock protein
1629	 38.10	0	1630105..1630293	-	62	21911165	rpmB	SpyM3_1629	-	50S ribosomal protein L28
1630	 41.84	0	1630675..1631556	-	293	21911166	fba	SpyM3_1630	-	fructose-bisphosphate aldolase
1631	 38.94	0	1631903..1632829	-	308	21911167	-	SpyM3_1631	-	hypothetical protein
1632	 40.87	0	1632997..1634601	-	534	21911168	pyrG	SpyM3_1632	-	CTP synthetase
1633	 36.46	0	1634858..1635433	-	191	161485735	rpoE	SpyM3_1633	-	DNA-directed RNA polymerase subunit delta
1634	 37.54	0	1635650..1636933	-	427	21911170	tig	SpyM3_1634	-	trigger factor
1635	 34.28	-1	1637254..1638099	+	281	21911171	-	SpyM3_1635	-	hypothetical protein
1636	 40.46	0	1638164..1638724	-	186	21911172	-	SpyM3_1636	-	hypothetical protein
1637	 39.19	0	1638738..1639130	-	130	21911173	-	SpyM3_1637	-	hypothetical protein
1638	 35.82	0	1639198..1639962	-	254	21911174	thiD	SpyM3_1638	-	phosphomethylpyrimidine kinase
1639	 36.27	0	1639952..1640701	-	249	21911175	truA	SpyM3_1639	-	tRNA pseudouridine synthase A
1640	 37.45	0	1640888..1641373	-	161	21911176	comX.2	SpyM3_1640	-	putative competence protein ComX1
1641	 40.13	0	1647159..1648232	-	357	21911177	-	SpyM3_1641	-	putative glycerate kinase
1642	 39.07	0	1648582..1651560	+	992	21911178	hsdR	SpyM3_1642	-	putative type I site-specific deoxyribonuclease hsdR subunit
1643	 34.78	-1	1651573..1652748	+	391	21911179	hsdS	SpyM3_1643	-	putative type I site-specific deoxyribonuclease hsdS subunit
1644	 36.75	0	1652761..1654341	+	526	21911180	hsdM	SpyM3_1644	-	putative type I site-specific deoxyribonuclease hsdM modification subunit
1645	 30.36	-2	1654898..1655503	-	201	21911181	salR	SpyM3_1645	-	putative response regulator of salavaricin regulon
1646	 29.04	-2	1655484..1656905	-	473	21911182	salK	SpyM3_1646	-	putative two-component sensor histidine kinase
1647	 31.18	-1	1657086..1658804	-	572	21911183	salY	SpyM3_1647	-	ABC transporter permease
1648	 32.52	-1	1658994..1659731	-	245	21911184	salX	SpyM3_1648	-	ABC transporter ATP-binding protein
1649	 30.51	-2	1659728..1661212	-	494	21911185	salT	SpyM3_1649	-	putative salivaricin A modification enzyme
1650	 29.77	-2	1661227..1661871	-	214	21911186	-	SpyM3_1650	-	putative salivaricin A modification enzyme
1651	 30.83	-2	1661849..1664683	-	944	21911187	salB	SpyM3_1651	-	putative salivaricin A modification enzyme
1652	 34.69	-1	1664766..1664912	-	48	21911188	salA	SpyM3_1652	-	lantibiotic salivaricin A precursor
1653	 37.95	0	1665427..1666833	-	468	21911189	lacG	SpyM3_1653	-	6-phospho-beta-galactosidase
1654	 38.75	0	1666906..1668603	-	565	21911190	lacE	SpyM3_1654	-	PTS system, lactose-specific IIBC component
1655	 37.11	0	1668603..1668920	-	105	21911191	lacF	SpyM3_1655	-	PTS system, lactose-specific IIA component
1656	 37.91	0	1668944..1669927	-	327	21911192	lacD.2	SpyM3_1656	-	tagatose 1,6-diphosphate aldolase
1657	 36.34	0	1669931..1670860	-	309	21911193	lacC.2	SpyM3_1657	-	tagatose-6-phosphate kinase
1658	 36.82	0	1670906..1671421	-	171	21911194	lacB.2	SpyM3_1658	-	galactose-6-phosphate isomerase subunit LacB
1659	 38.46	0	1671456..1671884	-	142	21911195	lacA.2	SpyM3_1659	-	galactose-6-phosphate isomerase subunit LacA
1660	 34.11	-1	1672329..1673102	+	257	21911196	lacR.2	SpyM3_1660	-	putative lactose phosphotransferase system repressor protein
1661	 34.03	-1	1673752..1674039	+	95	21911197	-	SpyM3_1661	-	DNA-damage-inducible protein J
1662	 33.93	-1	1674029..1674364	+	111	21911198	-	SpyM3_1662	-	hypothetical protein
1663	 45.04	+1	1675634..1676026	-	130	21911199	rpsI	SpyM3_1663	-	30S ribosomal protein S9
1664	 41.39	0	1676047..1676493	-	148	21911200	rplM	SpyM3_1664	-	50S ribosomal protein L13
1665	 42.03	0	1676711..1676917	-	68	21911201	-	SpyM3_1665	-	putative transcription regulator
1666	 41.77	0	1676914..1677612	-	232	21911202	-	SpyM3_1666	-	hypothetical protein
1667	 42.39	+1	1677739..1678599	-	286	21911203	-	SpyM3_1667	-	hypothetical protein
1668	 36.80	0	1678696..1679214	-	172	21911204	-	SpyM3_1668	-	hypothetical protein
1669	 38.55	0	1679218..1679964	-	248	21911205	-	SpyM3_1669	-	SpoU family tRNA/rRNA methyltransferase
1670	 36.72	0	1680011..1680808	-	265	21911206	-	SpyM3_1670	-	hypothetical protein
1671	 39.61	0	1681004..1681417	-	137	21911207	-	SpyM3_1671	-	hypothetical protein
1672	 41.15	0	1681410..1682753	-	447	21911208	cysS	SpyM3_1672	-	cysteinyl-tRNA synthetase
1673	 30.30	-2	1682781..1683011	-	76	21911209	-	SpyM3_1673	-	hypothetical protein
1674	 42.96	+1	1683490..1684071	-	193	21911210	cysE	SpyM3_1674	-	putative serine acetyltransferase
1675	 39.97	0	1684080..1684832	-	250	21911211	-	SpyM3_1675	-	hypothetical protein
1676	 44.26	+1	1684825..1686957	-	710	21911212	pnp	SpyM3_1676	-	polynucleotide phosphorylase/polyadenylase
1677	 41.29	0	1687238..1687966	-	242	21911213	-	SpyM3_1677	-	putative translaldolase
1678	 44.28	+1	1687979..1689358	-	459	21911214	ulaA	SpyM3_1678	-	ascorbate-specific PTS system enzyme IIC
1679	 37.54	0	1689385..1689669	-	94	21911215	-	SpyM3_1679	-	putative PTS system IIB component
1680	 40.56	0	1689662..1691722	-	686	21911216	-	SpyM3_1680	-	putative transcriptional regulator
1681	 41.11	0	1692074..1692343	-	89	21911217	rpsO	SpyM3_1681	-	30S ribosomal protein S15
1682	 39.80	0	1692519..1692719	-	66	21911218	-	SpyM3_1682	-	hypothetical protein
1683	 41.48	0	1692845..1693114	+	89	21911219	-	SpyM3_1683	-	hypothetical protein
1684	 40.33	0	1693215..1693829	+	204	21911220	def	SpyM3_1684	-	peptide deformylase
1685	 42.17	0	1693862..1694404	-	180	21911221	-	SpyM3_1685	-	hypothetical protein
1686	 39.16	0	1694535..1694963	-	142	21911222	-	SpyM3_1686	-	MarR family transcriptional regulator
1687	 43.25	+1	1695073..1699470	-	1465	21911223	polC	SpyM3_1687	-	DNA polymerase III PolC
1688	 43.46	+1	1699724..1701580	-	618	21911224	proS	SpyM3_1688	-	prolyl-tRNA synthetase
1689	 40.56	0	1701778..1703037	-	419	21911225	eep	SpyM3_1689	-	putative determinant for enhanced expression of pheromone
1690	 38.99	0	1703110..1703904	-	264	21911226	cdsA	SpyM3_1690	-	putative phosphatidate cytidylyltransferase
1691	 40.53	0	1703917..1704666	-	249	21911227	uppS	SpyM3_1691	-	putative undecaprenyl pyrophosphate synthetase
1692	 39.34	0	1704885..1705250	-	121	21911228	yajC	SpyM3_1692	-	preprotein translocase subunit YajC
1693	 43.68	+1	1705366..1705713	-	115	21911229	-	SpyM3_1693	-	putative transport accessory protein
1694	 43.20	+1	1705855..1709352	-	1165	21911230	pulA	SpyM3_1694	-	putative pullulanase
1695	 43.62	+1	1709550..1711163	-	537	21911231	dexB	SpyM3_1695	-	putative dextran glucosidase
1696	 42.77	+1	1711292..1712425	-	377	21911232	msmK	SpyM3_1696	-	sugar ABC transporter ATP-binding protein
1697	 44.88	+1	1712723..1713571	-	282	21911233	lrp	SpyM3_1697	-	leucine-rich protein
1698	 39.30	0	1713931..1715253	+	440	21911234	ska	SpyM3_1698	-	streptokinase A precursor
1699	 38.36	0	1715202..1715360	-	52	21911235	-	SpyM3_1699	-	hypothetical protein
1700	 43.02	+1	1715351..1715794	-	147	21911236	dtd	SpyM3_1700	-	D-tyrosyl-tRNA deacylase
1701	 44.34	+1	1715809..1717971	-	720	21911237	relA	SpyM3_1701	-	(p)ppGpp synthetase
1702	 49.28	+2	1718280..1718555	-	91	21911238	sclA	SpyM3_1702	-	putative collagen-like protein
1703	 44.29	+1	1718706..1719125	-	139	21911239	sclA	SpyM3_1703	-	putative collagen-like protein
1704	 37.92	0	1719526..1720659	+	377	21911240	-	SpyM3_1704	-	IS1548 transposase
1705	 37.04	0	1720664..1720798	+	44	21911241	-	SpyM3_1705	-	hypothetical protein
1706	 46.79	+2	1720833..1721315	+	160	21911242	nrdI.1	SpyM3_1706	-	hypothetical protein
1707	 42.12	0	1721710..1722528	-	272	21911243	rgfB	SpyM3_1707	-	putative RgfB protein
1708	 44.81	+1	1722607..1724793	-	728	21911244	-	SpyM3_1708	-	PTS system, glucose-specific IIABC component
1709	 43.47	+1	1725155..1725904	-	249	21911245	-	SpyM3_1709	-	hypothetical protein
1710	 44.03	+1	1725904..1726857	-	317	161485734	prmA	SpyM3_1710	-	ribosomal protein L11 methyltransferase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.