IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1557	 38.22	0	1548343..1550103	-	586	21911093	cycD	SpyM3_1557	-	ABC transporter ATP-binding protein
1558	 41.22	0	1550103..1550939	-	278	21911094	fhuC.2	SpyM3_1558	-	putative ferrichrome transport ATP-binding protein
1559	 40.47	0	1550936..1551958	-	340	21911095	fhuG.2	SpyM3_1559	-	putative ferrichrome ABC transporter (permease)
1560	 38.32	0	1551960..1553702	-	580	21911096	fhuD.2	SpyM3_1560	-	putative ferrichrome ABC transporter (ferrichrome-binding protein)
1561	 35.55	0	1553899..1557726	-	1275	21911097	-	SpyM3_1561	-	hypothetical protein
1562	 41.36	0	1558201..1559682	-	493	21911098	isp.2	SpyM3_1562	-	immunogenic secreted protein precursor-like protein
1563	 39.33	0	1559799..1560899	-	366	21911099	alr	SpyM3_1563	-	alanine racemase
1564	 36.41	0	1560896..1561252	-	118	21911100	acpS	SpyM3_1564	-	4'-phosphopantetheinyl transferase
1565	 41.27	0	1561368..1563887	-	839	21911101	secA	SpyM3_1565	-	preprotein translocase subunit SecA
1566	 41.40	0	1564021..1564974	-	317	21911102	pmi	SpyM3_1566	-	putative mannose-6-phosphate isomerase
1567	 46.10	+2	1565069..1565953	-	294	21911103	scrK	SpyM3_1567	-	putative fructokinase
1568	 37.73	0	1566217..1569216	-	999	21911104	ndoS	SpyM3_1568	-	putative secreted endoglycosidase
1569	 43.10	+1	1569447..1571330	-	627	21911105	scrA	SpyM3_1569	-	PTS system, sucrose-specific IIABC component
1570	 42.57	+1	1571572..1573011	+	479	21911106	scrB	SpyM3_1570	-	putative sucrose-6-phosphate hydrolase
1571	 37.59	0	1573136..1573981	+	281	21911107	scrR	SpyM3_1571	-	putative sucrose operon repressor
1572	 36.64	0	1574122..1574574	-	150	21911108	nusB	SpyM3_1572	-	transcription antitermination protein NusB
1573	 39.49	0	1574567..1574956	-	129	21911109	-	SpyM3_1573	-	hypothetical protein
1574	 40.68	0	1575002..1575559	-	185	21911110	efp	SpyM3_1574	-	elongation factor P
1575	 43.72	+1	1575655..1576116	-	153	21911111	comEB	SpyM3_1575	-	putative late competence protein required for DNA binding
1576	 43.20	+1	1576151..1577224	-	357	21911112	pepP	SpyM3_1576	-	Xaa-Pro dipeptidase
1577	 42.56	+1	1577340..1580168	-	942	21911113	uvrA	SpyM3_1577	-	excinuclease ABC subunit A
1578	 38.94	0	1580371..1581315	+	314	21911114	-	SpyM3_1578	-	divalent cation transport protein magnesium transporter
1579	 41.25	0	1581447..1582103	+	218	21911115	-	SpyM3_1579	-	hypothetical protein
1580	 40.83	0	1582236..1582475	-	79	21911116	rpsR	SpyM3_1580	-	30S ribosomal protein S18
1581	 42.89	+1	1582640..1583131	-	163	21911117	ssb.2	SpyM3_1581	-	single-strand DNA-binding protein
1582	 39.86	0	1583153..1583443	-	96	21911118	rpsF	SpyM3_1582	-	30S ribosomal protein S6
1583	 31.63	-1	1583616..1583909	-	97	21911119	-	SpyM3_1583	-	hypothetical protein
1584	 38.35	0	1584077..1585231	+	384	21911120	mutY	SpyM3_1584	-	putative A/G-specific adenine glycosylase
1585	 34.52	-1	1585408..1585995	+	195	21911121	-	SpyM3_1585	-	hypothetical protein
1586	 35.24	0	1586047..1586361	-	104	21911122	trx.2	SpyM3_1586	-	putative thioredoxin
1587	 32.93	-1	1586442..1586942	-	166	21911123	-	SpyM3_1587	-	putative PAP2 family protein
1588	 36.75	0	1586946..1589402	-	818	21911124	mutS.1	SpyM3_1588	-	putative DNA mismatch repair protein
1589	 34.07	-1	1589434..1589979	-	181	21911125	-	SpyM3_1589	-	hypothetical protein
1590	 33.01	-1	1589982..1590290	-	102	21911126	-	SpyM3_1590	-	hypothetical protein
1591	 37.10	0	1590447..1591349	+	300	21911127	-	SpyM3_1591	-	ribonuclease HIII
1592	 37.04	0	1591360..1591953	+	197	21911128	spi	SpyM3_1592	-	putative signal peptidase I
1593	 41.24	0	1592011..1594464	+	817	21911129	recD	SpyM3_1593	-	putative exodeoxyribonuclease V alpha subunit
1594	 36.61	0	1594556..1595044	+	162	21911130	-	SpyM3_1594	-	hypothetical protein
1595	 41.99	0	1595133..1596230	-	365	21911131	dinP	SpyM3_1595	-	DNA polymerase IV
1596	 41.84	0	1596440..1598767	+	775	21911132	pfl	SpyM3_1596	-	putative pyruvate formate-lyase
1597	 37.33	0	1598946..1599896	-	316	21911133	-	SpyM3_1597	-	putative esterase
1598	 35.19	0	1599881..1600633	-	250	21911134	cppA	SpyM3_1598	-	putative putative C3-degrading proteinase
1599	 38.16	0	1600895..1601827	+	310	21911135	-	SpyM3_1599	-	hypothetical protein
1600	 38.29	0	1602163..1603110	-	315	21911136	glpF.2	SpyM3_1600	-	putative glycerol uptake facilitator protein
1601	 39.26	0	1603513..1604709	-	398	21911137	norA	SpyM3_1601	-	putative antibiotic resistance protein
1602	 32.50	-1	1604815..1605534	+	239	21911138	-	SpyM3_1602	-	putative transcriptional regulatory protein
1603	 39.68	0	1605556..1607838	+	760	21911139	pepXP	SpyM3_1603	-	x-prolyl-dipeptidyl aminopeptidase
1604	 33.78	-1	1607918..1608139	-	73	21911140	-	SpyM3_1604	-	hypothetical protein
1605	 34.67	-1	1608309..1608683	+	124	21911141	-	SpyM3_1605	-	putative repressor
1606	 40.33	0	1608876..1609175	+	99	21911142	-	SpyM3_1606	-	hypothetical protein
1607	 39.97	0	1609232..1609969	-	245	21911143	-	SpyM3_1607	-	putative transcriptional activator regulator protein
1608	 39.87	0	1610122..1610748	-	208	21911144	dnaQ	SpyM3_1608	-	DNA polymerase III subunit epsilon
1609	 40.30	0	1610758..1611288	-	176	21911145	-	SpyM3_1609	-	hypothetical protein
1610	 42.58	+1	1611538..1612662	+	374	21911146	-	SpyM3_1610	-	hypothetical protein
1611	 37.50	0	1612757..1613428	-	223	21911147	deoC	SpyM3_1611	-	putative deoxyribose-phosphate aldolase
1612	 36.24	0	1613458..1614660	-	400	21911148	nupC	SpyM3_1612	-	putative nucleoside transporter
1613	 40.64	0	1614681..1615460	-	259	21911149	udp	SpyM3_1613	-	putative uridine phosphorylase
1614	 36.36	0	1615701..1616459	+	252	21911150	-	SpyM3_1614	-	GntR family transcriptional regulator
1615	 44.81	+1	1616679..1616948	+	89	21911151	rpsN	SpyM3_1615	-	30S ribosomal protein S14
1616	 41.79	0	1617119..1618147	-	342	21911152	gcp	SpyM3_1616	-	O-sialoglycoprotein endopeptidase
1617	 34.21	-1	1618137..1618592	-	151	21911153	-	SpyM3_1617	-	putative ribosomal-protein-alanine acetyltransferase
1618	 39.77	0	1618564..1619262	-	232	21911154	-	SpyM3_1618	-	putative glycoprotein endopeptidase
1619	 37.66	0	1619546..1619776	+	76	21911155	-	SpyM3_1619	-	hypothetical protein
1620	 39.99	0	1619778..1621460	+	560	21911156	-	SpyM3_1620	-	Zn-dependent hydrolase
1621	 37.71	0	1621688..1623034	-	448	21911157	glnA	SpyM3_1621	-	putative glutamine synthetase
1622	 37.37	0	1623072..1623443	-	123	21911158	glnR	SpyM3_1622	-	putative transcriptional repressor of glutamine synthetase
1623	 30.62	-2	1623510..1624061	-	183	21911159	-	SpyM3_1623	-	hypothetical protein
1624	 41.94	0	1624324..1625520	-	398	21911160	pgk	SpyM3_1624	-	phosphoglycerate kinase
1625	 35.44	0	1625713..1626567	-	284	21911161	lppC	SpyM3_1625	-	putative acid phosphatase
1626	 40.74	0	1626797..1627687	-	296	21911162	-	SpyM3_1626	-	hypothetical protein
1627	 42.22	0	1627924..1629555	-	543	21911163	-	SpyM3_1627	-	hypothetical protein
1628	 37.43	0	1629588..1629953	-	121	21911164	asp	SpyM3_1628	-	putative alkaline-shock protein
1629	 38.10	0	1630105..1630293	-	62	21911165	rpmB	SpyM3_1629	-	50S ribosomal protein L28
1630	 41.84	0	1630675..1631556	-	293	21911166	fba	SpyM3_1630	-	fructose-bisphosphate aldolase
1631	 38.94	0	1631903..1632829	-	308	21911167	-	SpyM3_1631	-	hypothetical protein
1632	 40.87	0	1632997..1634601	-	534	21911168	pyrG	SpyM3_1632	-	CTP synthetase
1633	 36.46	0	1634858..1635433	-	191	161485735	rpoE	SpyM3_1633	-	DNA-directed RNA polymerase subunit delta
1634	 37.54	0	1635650..1636933	-	427	21911170	tig	SpyM3_1634	-	trigger factor
1635	 34.28	-1	1637254..1638099	+	281	21911171	-	SpyM3_1635	-	hypothetical protein
1636	 40.46	0	1638164..1638724	-	186	21911172	-	SpyM3_1636	-	hypothetical protein
1637	 39.19	0	1638738..1639130	-	130	21911173	-	SpyM3_1637	-	hypothetical protein
1638	 35.82	0	1639198..1639962	-	254	21911174	thiD	SpyM3_1638	-	phosphomethylpyrimidine kinase
1639	 36.27	0	1639952..1640701	-	249	21911175	truA	SpyM3_1639	-	tRNA pseudouridine synthase A
1640	 37.45	0	1640888..1641373	-	161	21911176	comX.2	SpyM3_1640	-	putative competence protein ComX1
1641	 40.13	0	1647159..1648232	-	357	21911177	-	SpyM3_1641	-	putative glycerate kinase
1642	 39.07	0	1648582..1651560	+	992	21911178	hsdR	SpyM3_1642	-	putative type I site-specific deoxyribonuclease hsdR subunit
1643	 34.78	-1	1651573..1652748	+	391	21911179	hsdS	SpyM3_1643	-	putative type I site-specific deoxyribonuclease hsdS subunit
1644	 36.75	0	1652761..1654341	+	526	21911180	hsdM	SpyM3_1644	-	putative type I site-specific deoxyribonuclease hsdM modification subunit
1645	 30.36	-2	1654898..1655503	-	201	21911181	salR	SpyM3_1645	-	putative response regulator of salavaricin regulon
1646	 29.04	-2	1655484..1656905	-	473	21911182	salK	SpyM3_1646	-	putative two-component sensor histidine kinase
1647	 31.18	-1	1657086..1658804	-	572	21911183	salY	SpyM3_1647	-	ABC transporter permease
1648	 32.52	-1	1658994..1659731	-	245	21911184	salX	SpyM3_1648	-	ABC transporter ATP-binding protein
1649	 30.51	-2	1659728..1661212	-	494	21911185	salT	SpyM3_1649	-	putative salivaricin A modification enzyme
1650	 29.77	-2	1661227..1661871	-	214	21911186	-	SpyM3_1650	-	putative salivaricin A modification enzyme
1651	 30.83	-2	1661849..1664683	-	944	21911187	salB	SpyM3_1651	-	putative salivaricin A modification enzyme
1652	 34.69	-1	1664766..1664912	-	48	21911188	salA	SpyM3_1652	-	lantibiotic salivaricin A precursor
1653	 37.95	0	1665427..1666833	-	468	21911189	lacG	SpyM3_1653	-	6-phospho-beta-galactosidase
1654	 38.75	0	1666906..1668603	-	565	21911190	lacE	SpyM3_1654	-	PTS system, lactose-specific IIBC component
1655	 37.11	0	1668603..1668920	-	105	21911191	lacF	SpyM3_1655	-	PTS system, lactose-specific IIA component
1656	 37.91	0	1668944..1669927	-	327	21911192	lacD.2	SpyM3_1656	-	tagatose 1,6-diphosphate aldolase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.