IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1499	 37.06	0	1493112..1493648	-	178	21911035	-	SpyM3_1499	-	hypothetical protein
1500	 40.09	0	1493907..1494542	-	211	21911036	trmB	SpyM3_1500	-	tRNA (guanine-N(7))-methyltransferase
1501	 37.25	0	1494542..1495333	-	263	21911037	-	SpyM3_1501	-	hypothetical protein
1502	 32.27	-1	1495397..1496431	-	344	21911038	-	SpyM3_1502	-	putative ABC transporter (permease)
1503	 36.50	0	1496434..1497159	-	241	21911039	-	SpyM3_1503	-	putative ABC transporter ATP-binding protein
1504	 42.14	0	1497231..1497650	+	139	21911040	hit	SpyM3_1504	-	putative cell-cycle regulation histidine triad (HIT) protein
1505	 37.25	0	1497647..1498003	+	118	21911041	-	SpyM3_1505	-	hypothetical protein
1506	 38.40	0	1498114..1499397	-	427	21911042	-	SpyM3_1506	-	putative transcription regulator
1507	 36.00	0	1499406..1499930	-	174	21911043	-	SpyM3_1507	-	hypothetical protein
1508	 37.66	0	1499905..1500366	-	153	21911044	-	SpyM3_1508	-	ATP/GTP hydrolase
1509	 38.19	0	1500520..1501980	-	486	21911045	-	SpyM3_1509	-	hypothetical protein
1510	 39.73	0	1502244..1503056	+	270	21911046	-	SpyM3_1510	-	hypothetical protein
1511	 41.19	0	1503408..1504400	+	330	21911047	manL	SpyM3_1511	-	putative mannose-specific phosphotransferase system component IIAB
1512	 45.43	+1	1504489..1505298	+	269	21911048	manM	SpyM3_1512	-	PTS system, mannose-specific IIC component
1513	 43.42	+1	1505315..1506226	+	303	21911049	manN	SpyM3_1513	-	PTS system, mannose-specific IID component
1514	 34.44	-1	1506247..1506699	+	150	21911050	-	SpyM3_1514	-	hypothetical protein
1515	 37.97	0	1507020..1508012	+	330	21911051	-	SpyM3_1515	-	IS1548 transposase
1516	 42.33	+1	1508417..1509694	+	425	21911052	serS	SpyM3_1516	-	seryl-tRNA synthetase
1517	 43.06	+1	1509925..1510695	-	256	21911053	accA	SpyM3_1517	-	acetyl-CoA carboxylase subunit alpha
1518	 41.52	0	1510692..1511558	-	288	21911054	accD	SpyM3_1518	-	acetyl-CoA carboxylase subunit beta
1519	 42.20	0	1511567..1512931	-	454	21911055	accC	SpyM3_1519	-	acetyl-CoA carboxylase biotin carboxylase subunit
1520	 42.32	0	1512963..1513385	-	140	21911056	fabZ	SpyM3_1520	-	(3R)-hydroxymyristoyl-ACP dehydratase
1521	 41.52	0	1513382..1513882	-	166	161485736	accB	SpyM3_1521	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1522	 42.01	0	1513884..1515116	-	410	21911058	fabF	SpyM3_1522	-	3-oxoacyl-(acyl carrier protein) synthase II
1523	 39.73	0	1515131..1515865	-	244	21911059	fabG	SpyM3_1523	-	3-ketoacyl-(acyl-carrier-protein) reductase
1524	 39.94	0	1515855..1516793	-	312	21911060	fabD	SpyM3_1524	-	acyl-carrier-protein S-malonyltransferase
1525	 41.53	0	1516818..1517732	-	304	21911061	fabK	SpyM3_1525	-	putative trans-2-enoyl-ACP reductase II
1526	 31.11	-2	1517990..1518214	-	74	21911062	acpP	SpyM3_1526	-	acyl carrier protein
1527	 40.41	0	1518275..1519249	-	324	21911063	fabH	SpyM3_1527	-	3-oxoacyl-(acyl carrier protein) synthase III
1528	 37.93	0	1519250..1519684	-	144	21911064	-	SpyM3_1528	-	MarR family transcriptional regulator
1529	 39.52	0	1519761..1520552	-	263	21911065	phaB	SpyM3_1529	-	enoyl-CoA hydratase
1530	 42.65	+1	1520772..1521962	-	396	21911066	dnaJ	SpyM3_1530	-	heat-shock (chaperone) protein
1531	 40.34	0	1522189..1524015	-	608	21911067	dnaK	SpyM3_1531	-	molecular chaperone DnaK
1532	 40.84	0	1524195..1524767	-	190	21911068	grpE	SpyM3_1532	-	putative Hsp-70 cofactor
1533	 37.39	0	1524770..1525804	-	344	21911069	hrcA	SpyM3_1533	-	heat-inducible transcription repressor
1534	 35.26	0	1525939..1526508	-	189	21911070	-	SpyM3_1534	-	N-acetylmuramoyl-L-alanine amidase
1535	 39.65	0	1526505..1527248	-	247	21911071	-	SpyM3_1535	-	putative D,D-carboxypeptidase
1536	 39.83	0	1527238..1527945	-	235	21911072	-	SpyM3_1536	-	putative phosphoglycerate mutase
1537	 40.00	0	1528337..1528576	-	79	21911073	-	SpyM3_1537	-	hypothetical protein
1538	 37.04	0	1528795..1529010	-	71	21911074	-	SpyM3_1538	-	hypothetical protein
1539	 43.40	+1	1529007..1530446	-	479	21911075	gatB	SpyM3_1539	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1540	 43.35	+1	1530446..1531912	-	488	21911076	gatA	SpyM3_1540	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1541	 39.60	0	1531912..1532214	-	100	21911077	gatC	SpyM3_1541	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1542	 48.98	+2	1532445..1532738	-	97	21911078	-	SpyM3_1542	-	hypothetical protein
1543	 36.40	0	1533224..1533778	-	184	21911079	-	SpyM3_1543	-	putative pyrazinamidase/nicotinamidase
1544	 38.19	0	1533925..1534707	-	260	21911080	codY	SpyM3_1544	-	transcriptional repressor CodY
1545	 39.01	0	1534925..1536139	-	404	21911081	-	SpyM3_1545	-	aminotransferase AlaT
1546	 37.53	0	1536370..1536822	+	150	21911082	-	SpyM3_1546	-	hypothetical protein
1547	 38.01	0	1536945..1538333	-	462	21911083	-	SpyM3_1547	-	hypothetical protein
1548	 39.03	0	1538406..1539371	+	321	21911084	asnB	SpyM3_1548	-	L-asparaginase
1549	 30.92	-2	1539720..1540424	-	234	21911085	-	SpyM3_1549	-	hypothetical protein
1550	 35.11	0	1540437..1541339	-	300	21911086	-	SpyM3_1550	-	putative ABC transporter ATP-binding protein
1551	 37.10	0	1541632..1543647	-	671	21911087	recG	SpyM3_1551	-	putative ATP-dependent DNA helicase
1552	 42.29	0	1543740..1543940	+	66	21911088	-	SpyM3_1552	-	hypothetical protein
1553	 38.97	0	1544022..1545476	-	484	21911089	-	SpyM3_1553	-	putative ABC transporter ATP-binding protein
1554	 36.71	0	1545413..1546093	-	226	21911090	-	SpyM3_1554	-	hypothetical protein
1555	 35.19	0	1546090..1546683	-	197	21911091	-	SpyM3_1555	-	hypothetical protein
1556	 35.49	0	1546680..1548350	-	556	21911092	cycC	SpyM3_1556	-	ABC transporter ATP-binding protein
1557	 38.22	0	1548343..1550103	-	586	21911093	cycD	SpyM3_1557	-	ABC transporter ATP-binding protein
1558	 41.22	0	1550103..1550939	-	278	21911094	fhuC.2	SpyM3_1558	-	putative ferrichrome transport ATP-binding protein
1559	 40.47	0	1550936..1551958	-	340	21911095	fhuG.2	SpyM3_1559	-	putative ferrichrome ABC transporter (permease)
1560	 38.32	0	1551960..1553702	-	580	21911096	fhuD.2	SpyM3_1560	-	putative ferrichrome ABC transporter (ferrichrome-binding protein)
1561	 35.55	0	1553899..1557726	-	1275	21911097	-	SpyM3_1561	-	hypothetical protein
1562	 41.36	0	1558201..1559682	-	493	21911098	isp.2	SpyM3_1562	-	immunogenic secreted protein precursor-like protein
1563	 39.33	0	1559799..1560899	-	366	21911099	alr	SpyM3_1563	-	alanine racemase
1564	 36.41	0	1560896..1561252	-	118	21911100	acpS	SpyM3_1564	-	4'-phosphopantetheinyl transferase
1565	 41.27	0	1561368..1563887	-	839	21911101	secA	SpyM3_1565	-	preprotein translocase subunit SecA
1566	 41.40	0	1564021..1564974	-	317	21911102	pmi	SpyM3_1566	-	putative mannose-6-phosphate isomerase
1567	 46.10	+2	1565069..1565953	-	294	21911103	scrK	SpyM3_1567	-	putative fructokinase
1568	 37.73	0	1566217..1569216	-	999	21911104	ndoS	SpyM3_1568	-	putative secreted endoglycosidase
1569	 43.10	+1	1569447..1571330	-	627	21911105	scrA	SpyM3_1569	-	PTS system, sucrose-specific IIABC component
1570	 42.57	+1	1571572..1573011	+	479	21911106	scrB	SpyM3_1570	-	putative sucrose-6-phosphate hydrolase
1571	 37.59	0	1573136..1573981	+	281	21911107	scrR	SpyM3_1571	-	putative sucrose operon repressor
1572	 36.64	0	1574122..1574574	-	150	21911108	nusB	SpyM3_1572	-	transcription antitermination protein NusB
1573	 39.49	0	1574567..1574956	-	129	21911109	-	SpyM3_1573	-	hypothetical protein
1574	 40.68	0	1575002..1575559	-	185	21911110	efp	SpyM3_1574	-	elongation factor P
1575	 43.72	+1	1575655..1576116	-	153	21911111	comEB	SpyM3_1575	-	putative late competence protein required for DNA binding
1576	 43.20	+1	1576151..1577224	-	357	21911112	pepP	SpyM3_1576	-	Xaa-Pro dipeptidase
1577	 42.56	+1	1577340..1580168	-	942	21911113	uvrA	SpyM3_1577	-	excinuclease ABC subunit A
1578	 38.94	0	1580371..1581315	+	314	21911114	-	SpyM3_1578	-	divalent cation transport protein magnesium transporter
1579	 41.25	0	1581447..1582103	+	218	21911115	-	SpyM3_1579	-	hypothetical protein
1580	 40.83	0	1582236..1582475	-	79	21911116	rpsR	SpyM3_1580	-	30S ribosomal protein S18
1581	 42.89	+1	1582640..1583131	-	163	21911117	ssb.2	SpyM3_1581	-	single-strand DNA-binding protein
1582	 39.86	0	1583153..1583443	-	96	21911118	rpsF	SpyM3_1582	-	30S ribosomal protein S6
1583	 31.63	-1	1583616..1583909	-	97	21911119	-	SpyM3_1583	-	hypothetical protein
1584	 38.35	0	1584077..1585231	+	384	21911120	mutY	SpyM3_1584	-	putative A/G-specific adenine glycosylase
1585	 34.52	-1	1585408..1585995	+	195	21911121	-	SpyM3_1585	-	hypothetical protein
1586	 35.24	0	1586047..1586361	-	104	21911122	trx.2	SpyM3_1586	-	putative thioredoxin
1587	 32.93	-1	1586442..1586942	-	166	21911123	-	SpyM3_1587	-	putative PAP2 family protein
1588	 36.75	0	1586946..1589402	-	818	21911124	mutS.1	SpyM3_1588	-	putative DNA mismatch repair protein
1589	 34.07	-1	1589434..1589979	-	181	21911125	-	SpyM3_1589	-	hypothetical protein
1590	 33.01	-1	1589982..1590290	-	102	21911126	-	SpyM3_1590	-	hypothetical protein
1591	 37.10	0	1590447..1591349	+	300	21911127	-	SpyM3_1591	-	ribonuclease HIII
1592	 37.04	0	1591360..1591953	+	197	21911128	spi	SpyM3_1592	-	putative signal peptidase I
1593	 41.24	0	1592011..1594464	+	817	21911129	recD	SpyM3_1593	-	putative exodeoxyribonuclease V alpha subunit
1594	 36.61	0	1594556..1595044	+	162	21911130	-	SpyM3_1594	-	hypothetical protein
1595	 41.99	0	1595133..1596230	-	365	21911131	dinP	SpyM3_1595	-	DNA polymerase IV
1596	 41.84	0	1596440..1598767	+	775	21911132	pfl	SpyM3_1596	-	putative pyruvate formate-lyase
1597	 37.33	0	1598946..1599896	-	316	21911133	-	SpyM3_1597	-	putative esterase
1598	 35.19	0	1599881..1600633	-	250	21911134	cppA	SpyM3_1598	-	putative putative C3-degrading proteinase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.