IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1429	 39.86	0	1429022..1429909	-	295	21910965	-	SpyM3_1429	-	hypothetical protein
1430	 41.75	0	1429922..1430491	-	189	21910966	-	SpyM3_1430	-	hypothetical protein
1431	 37.83	0	1430659..1430925	-	88	21910967	-	SpyM3_1431	-	hypothetical protein
1432	 34.39	-1	1430930..1431118	-	62	21910968	-	SpyM3_1432	-	hypothetical protein
1433	 35.75	0	1431146..1432594	-	482	21910969	-	SpyM3_1433	-	hypothetical protein
1434	 37.62	0	1432554..1434023	-	489	21910970	-	SpyM3_1434	-	hypothetical protein
1435	 36.15	0	1434102..1435379	-	425	21910971	-	SpyM3_1435	-	putative terminase large subunit - phage associated
1436	 41.44	0	1435369..1435800	-	143	21910972	-	SpyM3_1436	-	putative terminase small subunit - phage associated
1437	 36.69	0	1435911..1436327	-	138	21910973	-	SpyM3_1437	-	putative transcriptional activator - phage associated
1438	 38.46	0	1436460..1436732	-	90	21910974	-	SpyM3_1438	-	hypothetical protein
1439	 37.43	0	1436725..1436895	-	56	21910975	-	SpyM3_1439	-	hypothetical protein
1440	 41.19	0	1436896..1438218	-	440	21910976	-	SpyM3_1440	-	putative helicase - phage associated
1441	 40.58	0	1438215..1438490	-	91	21910977	-	SpyM3_1441	-	hypothetical protein
1442	 43.40	+1	1438856..1441240	-	794	21910978	-	SpyM3_1442	-	putative DNA primase/helicase - phage associated
1443	 45.19	+1	1441245..1443167	-	640	21910979	polA.2	SpyM3_1443	-	DNA polymerase A domain-containing protein
1444	 42.20	0	1443210..1443773	-	187	21910980	-	SpyM3_1444	-	hypothetical protein
1445	 42.06	0	1443787..1444944	-	385	21910981	-	SpyM3_1445	-	hypothetical protein
1446	 40.67	0	1444944..1445243	-	99	21910982	-	SpyM3_1446	-	hypothetical protein
1447	 42.16	0	1445331..1445534	-	67	21910983	-	SpyM3_1447	-	hypothetical protein
1448	 37.91	0	1445531..1445683	-	50	21910984	-	SpyM3_1448	-	hypothetical protein
1449	 37.24	0	1445680..1446063	-	127	21910985	-	SpyM3_1449	-	hypothetical protein
1450	 35.06	0	1446094..1446267	-	57	21910986	-	SpyM3_1450	-	hypothetical protein
1451	 33.33	-1	1446260..1446430	-	56	21910987	-	SpyM3_1451	-	hypothetical protein
1452	 35.27	0	1446459..1446716	-	85	21910988	-	SpyM3_1452	-	hypothetical protein
1453	 38.53	0	1446804..1447034	-	76	21910989	-	SpyM3_1453	-	hypothetical protein
1454	 32.81	-1	1447055..1447246	-	63	21910990	-	SpyM3_1454	-	putative transcriptional repressor - phage associated
1455	 38.93	0	1447861..1448235	+	124	21910991	-	SpyM3_1455	-	putative repressor - phage associated
1456	 35.68	0	1448249..1448632	+	127	21910992	-	SpyM3_1456	-	hypothetical protein
1457	 37.68	0	1448643..1449194	+	183	21910993	-	SpyM3_1457	-	hypothetical protein
1458	 37.19	0	1449370..1450458	+	362	21910994	int315.6	SpyM3_1458	-	putative integrase - phage associated
1459	 37.45	0	1450601..1452229	-	542	21910995	-	SpyM3_1459	-	ABC transporter permease
1460	 39.59	0	1452234..1452968	-	244	21910996	-	SpyM3_1460	-	ABC transporter ATP-binding protein
1461	 36.44	0	1453044..1453268	-	74	21910997	-	SpyM3_1461	-	hypothetical protein
1462	 44.96	+1	1453461..1455446	-	661	161485739	tkt	SpyM3_1462	-	transketolase
1463	 40.00	0	1455664..1456308	-	214	21910999	tal	SpyM3_1463	-	putative translaldolase
1464	 40.40	0	1456434..1457933	-	499	21911000	-	SpyM3_1464	-	trans-acting positive regulator
1465	 41.18	0	1457923..1459362	-	479	21911001	npx	SpyM3_1465	-	NADH peroxidase
1466	 46.30	+2	1459378..1460079	-	233	21911002	glpF.1	SpyM3_1466	-	putative glycerol uptake facilitator
1467	 42.74	+1	1460081..1461919	-	612	21911003	glpO	SpyM3_1467	-	putative alpha-glycerophosphate oxidase
1468	 41.91	0	1461935..1463461	-	508	21911004	glpK	SpyM3_1468	-	glycerol kinase
1469	 35.62	0	1463820..1464212	-	130	21911005	-	SpyM3_1469	-	hypothetical protein
1470	 43.02	+1	1464339..1464596	-	85	21911006	-	SpyM3_1470	-	hypothetical protein
1471	 43.87	+1	1464750..1466789	-	679	161485738	glyS	SpyM3_1471	-	glycyl-tRNA synthetase subunit beta
1472	 43.15	+1	1467156..1468082	-	308	21911008	glyQ	SpyM3_1472	-	glycyl-tRNA synthetase subunit alpha
1473	 35.11	0	1468454..1468960	-	168	21911009	-	SpyM3_1473	-	hypothetical protein
1474	 41.07	0	1469122..1469961	-	279	21911010	-	SpyM3_1474	-	reductase/dehydrogenase aldo/keto reductase family protein
1475	 43.52	+1	1470083..1471231	-	382	21911011	nagA	SpyM3_1475	-	N-acetylglucosamine-6-phosphate deacetylase
1476	 39.03	0	1471349..1472980	-	543	21911012	-	SpyM3_1476	-	putative Na/Pi cotransporter II-related protein
1477	 40.61	0	1473218..1473904	+	228	21911013	-	SpyM3_1477	-	hypothetical protein
1478	 38.08	0	1474034..1474876	-	280	21911014	-	SpyM3_1478	-	hypothetical protein
1479	 36.02	0	1475169..1475726	+	185	21911015	-	SpyM3_1479	-	TetR family transcriptional regulator
1480	 42.06	0	1475762..1476586	-	274	21911016	-	SpyM3_1480	-	hypothetical protein
1481	 42.57	+1	1476588..1477193	-	201	21911017	-	SpyM3_1481	-	hypothetical protein
1482	 40.49	0	1477402..1478379	-	325	21911018	lacD.1	SpyM3_1482	-	tagatose 1,6-diphosphate aldolase
1483	 39.32	0	1478529..1478879	-	116	21911019	lacC.1	SpyM3_1483	-	putative tagatose-6-phosphate kinase
1484	 38.95	0	1478889..1479404	-	171	21911020	lacB.1	SpyM3_1484	-	galactose-6-phosphate isomerase subunit LacB
1485	 42.02	0	1479419..1479844	-	141	21911021	lacA.1	SpyM3_1485	-	galactose-6-phosphate isomerase subunit LacA
1486	 42.15	0	1480101..1481552	-	483	21911022	-	SpyM3_1486	-	PTS system, galactose-specific IIC component
1487	 42.16	0	1481578..1481883	-	101	21911023	-	SpyM3_1487	-	PTS system, galactose-specific IIB component
1488	 39.24	0	1481876..1482349	-	157	21911024	-	SpyM3_1488	-	PTS system, galactose-specific IIA component
1489	 36.06	0	1482586..1483356	+	256	21911025	lacR.1	SpyM3_1489	-	putative phosphotransferase system repressor protein
1490	 42.16	0	1483560..1483763	-	67	21911026	copZ	SpyM3_1490	-	putative copper chaperone
1491	 43.37	+1	1483777..1486008	-	743	21911027	copA	SpyM3_1491	-	putative copper-transporting ATPase
1492	 40.92	0	1486008..1486442	-	144	21911028	copY	SpyM3_1492	-	putative negative regulator of copper transport operon
1493	 38.20	0	1486614..1487600	+	328	21911029	-	SpyM3_1493	-	putative esterase
1494	 39.03	0	1487736..1488086	-	116	21911030	rbfA	SpyM3_1494	-	ribosome-binding factor A
1495	 41.00	0	1488292..1491096	-	934	21911031	infB	SpyM3_1495	-	translation initiation factor IF-2
1496	 36.30	0	1491173..1491475	-	100	21911032	-	SpyM3_1496	-	hypothetical protein
1497	 33.33	-1	1491468..1491764	-	98	21911033	-	SpyM3_1497	-	hypothetical protein
1498	 40.33	0	1491780..1492937	-	385	161485737	nusA	SpyM3_1498	-	transcription elongation factor NusA
1499	 37.06	0	1493112..1493648	-	178	21911035	-	SpyM3_1499	-	hypothetical protein
1500	 40.09	0	1493907..1494542	-	211	21911036	trmB	SpyM3_1500	-	tRNA (guanine-N(7))-methyltransferase
1501	 37.25	0	1494542..1495333	-	263	21911037	-	SpyM3_1501	-	hypothetical protein
1502	 32.27	-1	1495397..1496431	-	344	21911038	-	SpyM3_1502	-	putative ABC transporter (permease)
1503	 36.50	0	1496434..1497159	-	241	21911039	-	SpyM3_1503	-	putative ABC transporter ATP-binding protein
1504	 42.14	0	1497231..1497650	+	139	21911040	hit	SpyM3_1504	-	putative cell-cycle regulation histidine triad (HIT) protein
1505	 37.25	0	1497647..1498003	+	118	21911041	-	SpyM3_1505	-	hypothetical protein
1506	 38.40	0	1498114..1499397	-	427	21911042	-	SpyM3_1506	-	putative transcription regulator
1507	 36.00	0	1499406..1499930	-	174	21911043	-	SpyM3_1507	-	hypothetical protein
1508	 37.66	0	1499905..1500366	-	153	21911044	-	SpyM3_1508	-	ATP/GTP hydrolase
1509	 38.19	0	1500520..1501980	-	486	21911045	-	SpyM3_1509	-	hypothetical protein
1510	 39.73	0	1502244..1503056	+	270	21911046	-	SpyM3_1510	-	hypothetical protein
1511	 41.19	0	1503408..1504400	+	330	21911047	manL	SpyM3_1511	-	putative mannose-specific phosphotransferase system component IIAB
1512	 45.43	+1	1504489..1505298	+	269	21911048	manM	SpyM3_1512	-	PTS system, mannose-specific IIC component
1513	 43.42	+1	1505315..1506226	+	303	21911049	manN	SpyM3_1513	-	PTS system, mannose-specific IID component
1514	 34.44	-1	1506247..1506699	+	150	21911050	-	SpyM3_1514	-	hypothetical protein
1515	 37.97	0	1507020..1508012	+	330	21911051	-	SpyM3_1515	-	IS1548 transposase
1516	 42.33	+1	1508417..1509694	+	425	21911052	serS	SpyM3_1516	-	seryl-tRNA synthetase
1517	 43.06	+1	1509925..1510695	-	256	21911053	accA	SpyM3_1517	-	acetyl-CoA carboxylase subunit alpha
1518	 41.52	0	1510692..1511558	-	288	21911054	accD	SpyM3_1518	-	acetyl-CoA carboxylase subunit beta
1519	 42.20	0	1511567..1512931	-	454	21911055	accC	SpyM3_1519	-	acetyl-CoA carboxylase biotin carboxylase subunit
1520	 42.32	0	1512963..1513385	-	140	21911056	fabZ	SpyM3_1520	-	(3R)-hydroxymyristoyl-ACP dehydratase
1521	 41.52	0	1513382..1513882	-	166	161485736	accB	SpyM3_1521	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1522	 42.01	0	1513884..1515116	-	410	21911058	fabF	SpyM3_1522	-	3-oxoacyl-(acyl carrier protein) synthase II
1523	 39.73	0	1515131..1515865	-	244	21911059	fabG	SpyM3_1523	-	3-ketoacyl-(acyl-carrier-protein) reductase
1524	 39.94	0	1515855..1516793	-	312	21911060	fabD	SpyM3_1524	-	acyl-carrier-protein S-malonyltransferase
1525	 41.53	0	1516818..1517732	-	304	21911061	fabK	SpyM3_1525	-	putative trans-2-enoyl-ACP reductase II
1526	 31.11	-2	1517990..1518214	-	74	21911062	acpP	SpyM3_1526	-	acyl carrier protein
1527	 40.41	0	1518275..1519249	-	324	21911063	fabH	SpyM3_1527	-	3-oxoacyl-(acyl carrier protein) synthase III
1528	 37.93	0	1519250..1519684	-	144	21911064	-	SpyM3_1528	-	MarR family transcriptional regulator
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.