IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1386	 39.74	0	1387449..1388603	-	384	21910922	-	SpyM3_1386	-	putative N6-adenine-specific DNA methylase
1387	 31.80	-1	1389048..1389374	-	108	21910923	-	SpyM3_1387	-	hypothetical protein
1388	 33.72	-1	1389493..1390008	-	171	21910924	-	SpyM3_1388	-	hypothetical protein
1389	 36.12	0	1390089..1390697	+	202	21910925	recU	SpyM3_1389	-	Holliday junction-specific endonuclease
1390	 38.87	0	1390684..1392849	+	721	21910926	pbp1A	SpyM3_1390	-	putative penicillin-binding protein 1A
1391	 39.24	0	1393316..1394653	-	445	21910927	pepC	SpyM3_1391	-	putative aminopeptidase C
1392	 42.30	0	1394838..1395662	-	274	21910928	nadE	SpyM3_1392	-	NAD synthetase
1393	 40.04	0	1395659..1397119	-	486	21910929	-	SpyM3_1393	-	nicotinate phosphoribosyltransferase
1394	 39.78	0	1397289..1398668	-	459	21910930	aapA	SpyM3_1394	-	putative amino acid permease
1395	 39.54	0	1398837..1399754	-	305	21910931	nox.2	SpyM3_1395	-	putative thioredoxin reductase
1396	 30.22	-2	1399818..1400042	-	74	21910932	-	SpyM3_1396	-	hypothetical protein
1397	 39.92	0	1400146..1400889	-	247	21910933	-	SpyM3_1397	-	amino acid ABC transporter ATP-binding protein
1398	 39.30	0	1400889..1401692	-	267	21910934	-	SpyM3_1398	-	putative amino acid ABC transproter (permease protein)
1399	 41.89	0	1401887..1403230	-	447	21910935	-	SpyM3_1399	-	ATP-dependent RNA helicase
1400	 38.08	0	1403388..1404398	-	336	21910936	mraY	SpyM3_1400	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1401	 37.48	0	1404400..1406568	-	722	21910937	pbp2X	SpyM3_1401	-	putative penicillin binding protein 2X
1402	 34.18	-1	1406659..1407012	-	117	21910938	ftsL	SpyM3_1402	-	putative cell division protein
1403	 39.55	0	1406987..1408000	-	337	21910939	mraW	SpyM3_1403	-	S-adenosyl-methyltransferase MraW
1404	 39.39	0	1408024..1408188	-	54	21910940	-	SpyM3_1404	-	hypothetical protein
1405	 34.83	-1	1408290..1408490	-	66	21910941	-	SpyM3_1405	-	hypothetical protein
1406	 42.61	+1	1408471..1409721	-	416	21910942	proA	SpyM3_1406	-	gamma-glutamyl phosphate reductase
1407	 39.54	0	1409714..1410535	-	273	21910943	proB	SpyM3_1407	-	gamma-glutamyl kinase
1408	 41.53	0	1410725..1410907	-	60	21910944	-	SpyM3_1408	-	hypothetical protein
1409	 36.19	0	1411146..1412126	+	326	21910945	sdn	SpyM3_1409	-	streptodornase (Sdn) - phage associated
1410	 31.73	-1	1412441..1412815	-	124	21910946	-	SpyM3_1410	-	hypothetical protein
1411	 46.26	+2	1413077..1413811	-	244	21910947	-	SpyM3_1411	-	putative cell wall hydrolase, lysin - phage associated
1412	 40.74	0	1414091..1414279	-	62	21910948	-	SpyM3_1412	-	putative cell wall hydrolase, lysin - phage associated
1413	 39.47	0	1414395..1414622	-	75	21910949	-	SpyM3_1413	-	putative holin - phage associated
1414	 37.73	0	1414619..1414891	-	90	21910950	-	SpyM3_1414	-	hypothetical protein
1415	 43.20	+1	1414901..1415518	-	205	21910951	-	SpyM3_1415	-	hypothetical protein
1416	 37.21	0	1415515..1415952	-	145	21910952	-	SpyM3_1416	-	hypothetical protein
1417	 43.45	+1	1415964..1417979	-	671	21910953	-	SpyM3_1417	-	hypothetical protein
1418	 38.39	0	1417989..1418996	-	335	21910954	hylP.6	SpyM3_1418	-	putative hyaluronidase - phage associated
1419	 41.01	0	1418993..1420972	-	659	21910955	-	SpyM3_1419	-	hypothetical protein
1420	 37.96	0	1420982..1421824	-	280	21910956	-	SpyM3_1420	-	hypothetical protein
1421	 43.30	+1	1421836..1426218	-	1460	21910957	-	SpyM3_1421	-	putative tail protein - phage associated
1422	 37.61	0	1426233..1426466	-	77	21910958	-	SpyM3_1422	-	hypothetical protein
1423	 36.84	0	1426541..1426996	-	151	21910959	-	SpyM3_1423	-	hypothetical protein
1424	 39.83	0	1427050..1427649	-	199	21910960	-	SpyM3_1424	-	hypothetical protein
1425	 33.89	-1	1427661..1428020	-	119	21910961	-	SpyM3_1425	-	hypothetical protein
1426	 41.59	0	1428024..1428350	-	108	21910962	-	SpyM3_1426	-	hypothetical protein
1427	 35.84	0	1428365..1428643	-	92	21910963	-	SpyM3_1427	-	hypothetical protein
1428	 37.82	0	1428654..1429010	-	118	21910964	-	SpyM3_1428	-	hypothetical protein
1429	 39.86	0	1429022..1429909	-	295	21910965	-	SpyM3_1429	-	hypothetical protein
1430	 41.75	0	1429922..1430491	-	189	21910966	-	SpyM3_1430	-	hypothetical protein
1431	 37.83	0	1430659..1430925	-	88	21910967	-	SpyM3_1431	-	hypothetical protein
1432	 34.39	-1	1430930..1431118	-	62	21910968	-	SpyM3_1432	-	hypothetical protein
1433	 35.75	0	1431146..1432594	-	482	21910969	-	SpyM3_1433	-	hypothetical protein
1434	 37.62	0	1432554..1434023	-	489	21910970	-	SpyM3_1434	-	hypothetical protein
1435	 36.15	0	1434102..1435379	-	425	21910971	-	SpyM3_1435	-	putative terminase large subunit - phage associated
1436	 41.44	0	1435369..1435800	-	143	21910972	-	SpyM3_1436	-	putative terminase small subunit - phage associated
1437	 36.69	0	1435911..1436327	-	138	21910973	-	SpyM3_1437	-	putative transcriptional activator - phage associated
1438	 38.46	0	1436460..1436732	-	90	21910974	-	SpyM3_1438	-	hypothetical protein
1439	 37.43	0	1436725..1436895	-	56	21910975	-	SpyM3_1439	-	hypothetical protein
1440	 41.19	0	1436896..1438218	-	440	21910976	-	SpyM3_1440	-	putative helicase - phage associated
1441	 40.58	0	1438215..1438490	-	91	21910977	-	SpyM3_1441	-	hypothetical protein
1442	 43.40	+1	1438856..1441240	-	794	21910978	-	SpyM3_1442	-	putative DNA primase/helicase - phage associated
1443	 45.19	+1	1441245..1443167	-	640	21910979	polA.2	SpyM3_1443	-	DNA polymerase A domain-containing protein
1444	 42.20	0	1443210..1443773	-	187	21910980	-	SpyM3_1444	-	hypothetical protein
1445	 42.06	0	1443787..1444944	-	385	21910981	-	SpyM3_1445	-	hypothetical protein
1446	 40.67	0	1444944..1445243	-	99	21910982	-	SpyM3_1446	-	hypothetical protein
1447	 42.16	0	1445331..1445534	-	67	21910983	-	SpyM3_1447	-	hypothetical protein
1448	 37.91	0	1445531..1445683	-	50	21910984	-	SpyM3_1448	-	hypothetical protein
1449	 37.24	0	1445680..1446063	-	127	21910985	-	SpyM3_1449	-	hypothetical protein
1450	 35.06	0	1446094..1446267	-	57	21910986	-	SpyM3_1450	-	hypothetical protein
1451	 33.33	-1	1446260..1446430	-	56	21910987	-	SpyM3_1451	-	hypothetical protein
1452	 35.27	0	1446459..1446716	-	85	21910988	-	SpyM3_1452	-	hypothetical protein
1453	 38.53	0	1446804..1447034	-	76	21910989	-	SpyM3_1453	-	hypothetical protein
1454	 32.81	-1	1447055..1447246	-	63	21910990	-	SpyM3_1454	-	putative transcriptional repressor - phage associated
1455	 38.93	0	1447861..1448235	+	124	21910991	-	SpyM3_1455	-	putative repressor - phage associated
1456	 35.68	0	1448249..1448632	+	127	21910992	-	SpyM3_1456	-	hypothetical protein
1457	 37.68	0	1448643..1449194	+	183	21910993	-	SpyM3_1457	-	hypothetical protein
1458	 37.19	0	1449370..1450458	+	362	21910994	int315.6	SpyM3_1458	-	putative integrase - phage associated
1459	 37.45	0	1450601..1452229	-	542	21910995	-	SpyM3_1459	-	ABC transporter permease
1460	 39.59	0	1452234..1452968	-	244	21910996	-	SpyM3_1460	-	ABC transporter ATP-binding protein
1461	 36.44	0	1453044..1453268	-	74	21910997	-	SpyM3_1461	-	hypothetical protein
1462	 44.96	+1	1453461..1455446	-	661	161485739	tkt	SpyM3_1462	-	transketolase
1463	 40.00	0	1455664..1456308	-	214	21910999	tal	SpyM3_1463	-	putative translaldolase
1464	 40.40	0	1456434..1457933	-	499	21911000	-	SpyM3_1464	-	trans-acting positive regulator
1465	 41.18	0	1457923..1459362	-	479	21911001	npx	SpyM3_1465	-	NADH peroxidase
1466	 46.30	+2	1459378..1460079	-	233	21911002	glpF.1	SpyM3_1466	-	putative glycerol uptake facilitator
1467	 42.74	+1	1460081..1461919	-	612	21911003	glpO	SpyM3_1467	-	putative alpha-glycerophosphate oxidase
1468	 41.91	0	1461935..1463461	-	508	21911004	glpK	SpyM3_1468	-	glycerol kinase
1469	 35.62	0	1463820..1464212	-	130	21911005	-	SpyM3_1469	-	hypothetical protein
1470	 43.02	+1	1464339..1464596	-	85	21911006	-	SpyM3_1470	-	hypothetical protein
1471	 43.87	+1	1464750..1466789	-	679	161485738	glyS	SpyM3_1471	-	glycyl-tRNA synthetase subunit beta
1472	 43.15	+1	1467156..1468082	-	308	21911008	glyQ	SpyM3_1472	-	glycyl-tRNA synthetase subunit alpha
1473	 35.11	0	1468454..1468960	-	168	21911009	-	SpyM3_1473	-	hypothetical protein
1474	 41.07	0	1469122..1469961	-	279	21911010	-	SpyM3_1474	-	reductase/dehydrogenase aldo/keto reductase family protein
1475	 43.52	+1	1470083..1471231	-	382	21911011	nagA	SpyM3_1475	-	N-acetylglucosamine-6-phosphate deacetylase
1476	 39.03	0	1471349..1472980	-	543	21911012	-	SpyM3_1476	-	putative Na/Pi cotransporter II-related protein
1477	 40.61	0	1473218..1473904	+	228	21911013	-	SpyM3_1477	-	hypothetical protein
1478	 38.08	0	1474034..1474876	-	280	21911014	-	SpyM3_1478	-	hypothetical protein
1479	 36.02	0	1475169..1475726	+	185	21911015	-	SpyM3_1479	-	TetR family transcriptional regulator
1480	 42.06	0	1475762..1476586	-	274	21911016	-	SpyM3_1480	-	hypothetical protein
1481	 42.57	+1	1476588..1477193	-	201	21911017	-	SpyM3_1481	-	hypothetical protein
1482	 40.49	0	1477402..1478379	-	325	21911018	lacD.1	SpyM3_1482	-	tagatose 1,6-diphosphate aldolase
1483	 39.32	0	1478529..1478879	-	116	21911019	lacC.1	SpyM3_1483	-	putative tagatose-6-phosphate kinase
1484	 38.95	0	1478889..1479404	-	171	21911020	lacB.1	SpyM3_1484	-	galactose-6-phosphate isomerase subunit LacB
1485	 42.02	0	1479419..1479844	-	141	21911021	lacA.1	SpyM3_1485	-	galactose-6-phosphate isomerase subunit LacA
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.