IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1339	 35.38	0	1341435..1342313	-	292	21910875	-	SpyM3_1339	-	putative DNA primase - phage associated
1340	 36.76	0	1342361..1342915	-	184	21910876	-	SpyM3_1340	-	putative DNA primase - phage associated
1341	 38.56	0	1342905..1343708	-	267	21910877	-	SpyM3_1341	-	hypothetical protein
1342	 34.42	-1	1343720..1344178	-	152	21910878	-	SpyM3_1342	-	hypothetical protein
1343	 39.02	0	1344194..1345423	-	409	21910879	-	SpyM3_1343	-	putative helicase - phage associated
1344	 36.27	0	1345525..1346205	-	226	21910880	-	SpyM3_1344	-	hypothetical protein
1345	 32.92	-1	1346206..1346688	-	160	21910881	-	SpyM3_1345	-	hypothetical protein
1346	 35.24	0	1346917..1347231	-	104	21910882	-	SpyM3_1346	-	hypothetical protein
1347	 31.16	-1	1347247..1347384	-	45	21910883	-	SpyM3_1347	-	hypothetical protein
1348	 35.32	0	1347415..1347666	-	83	21910884	-	SpyM3_1348	-	hypothetical protein
1349	 37.44	0	1347761..1347979	-	72	21910885	-	SpyM3_1349	-	putative Cro-like repressor - phage associated
1350	 40.00	0	1348168..1348527	+	119	21910886	-	SpyM3_1350	-	putative cI-like repressor - phage associated
1351	 31.75	-1	1348511..1348888	+	125	21910887	-	SpyM3_1351	-	cI-like repressor
1352	 32.68	-1	1348899..1349051	+	50	21910888	-	SpyM3_1352	-	hypothetical protein
1353	 28.09	-2	1349320..1349910	+	196	21910889	-	SpyM3_1353	-	hypothetical protein
1354	 35.22	0	1350084..1351250	+	388	21910890	int315.5	SpyM3_1354	-	putative phage integrase - phage associated
1355	 35.39	0	1351398..1352174	+	258	21910891	recX	SpyM3_1355	-	recombination regulator RecX
1356	 36.33	0	1352254..1352787	+	177	21910892	-	SpyM3_1356	-	hypothetical protein
1357	 36.20	0	1353157..1353435	+	92	21910893	-	SpyM3_1357	-	hypothetical protein
1358	 35.52	0	1360561..1361109	-	182	21910894	-	SpyM3_1358	-	putative ribosomal subunit interface protein
1359	 32.88	-1	1361189..1361854	-	221	21910895	comFC	SpyM3_1359	-	putative late competence protein
1360	 36.32	0	1361826..1362059	-	77	21910896	-	SpyM3_1360	-	putative late competence protein required for DNA uptake
1361	 36.52	0	1362086..1362994	-	302	21910897	-	SpyM3_1361	-	putative late competence protein required for DNA uptake
1362	 34.41	-1	1363190..1363837	+	215	21910898	-	SpyM3_1362	-	hypothetical protein
1363	 39.49	0	1363965..1364906	+	313	21910899	cysM	SpyM3_1363	-	putative O-acetylserine lyase
1364	 38.10	0	1364924..1365301	-	125	21910900	-	SpyM3_1364	-	hypothetical protein
1365	 40.69	0	1365301..1366701	-	466	21910901	-	SpyM3_1365	-	putative Cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type
1366	 39.56	0	1366738..1367379	-	213	21910902	-	SpyM3_1366	-	putative two-component response regulator
1367	 34.43	-1	1367372..1368376	-	334	21910903	-	SpyM3_1367	-	putative two-component sensor histidine kinase
1368	 31.46	-1	1368373..1369065	-	230	21910904	-	SpyM3_1368	-	hypothetical protein
1369	 39.76	0	1369188..1371086	-	632	21910905	-	SpyM3_1369	-	putative serine/threonine kinase
1370	 38.60	0	1371083..1371823	-	246	21910906	pppL	SpyM3_1370	-	putative phosphoprotein phosphatase
1371	 39.08	0	1371861..1373183	-	440	21910907	sunL	SpyM3_1371	-	16S rRNA m(5)C 967 methyltransferase
1372	 37.93	0	1373173..1374108	-	311	21910908	fmt	SpyM3_1372	-	methionyl-tRNA formyltransferase
1373	 38.70	0	1374170..1376554	-	794	21910909	priA	SpyM3_1373	-	primosome assembly protein PriA
1374	 38.99	0	1376619..1376936	-	105	21910910	-	SpyM3_1374	-	DNA-directed RNA polymerase subunit omega
1375	 39.31	0	1376952..1377587	-	211	21910911	gmk	SpyM3_1375	-	guanylate kinase
1376	 41.36	0	1377697..1379304	-	535	21910912	-	SpyM3_1376	-	hypothetical protein
1377	 35.90	0	1379434..1380330	-	298	21910913	-	SpyM3_1377	-	LysR family transcriptional regulator
1378	 41.67	0	1380529..1381716	+	395	21910914	atoB	SpyM3_1378	-	putative acetyl-CoA:acetyltransferase
1379	 41.67	0	1381815..1382390	+	191	21910915	atoD.1	SpyM3_1379	-	putative Acetyl-CoA:acetoacetyl-CoA transferase A subunit
1380	 41.36	0	1382392..1383051	+	219	21910916	atoA	SpyM3_1380	-	putative Acetyl-CoA:acetoacetyl-CoA transferase b subunit
1381	 36.61	0	1383084..1383266	+	60	21910917	-	SpyM3_1381	-	putative oxidoreductase
1382	 41.14	0	1383339..1383863	+	174	21910918	-	SpyM3_1382	-	3-hydroxybutyrate dehydrogenase
1383	 38.96	0	1383934..1385265	+	443	21910919	-	SpyM3_1383	-	putative permease
1384	 41.61	0	1385339..1385821	+	160	21910920	luxS	SpyM3_1384	-	S-ribosylhomocysteinase
1385	 40.41	0	1385966..1387435	-	489	21910921	-	SpyM3_1385	-	hypothetical protein
1386	 39.74	0	1387449..1388603	-	384	21910922	-	SpyM3_1386	-	putative N6-adenine-specific DNA methylase
1387	 31.80	-1	1389048..1389374	-	108	21910923	-	SpyM3_1387	-	hypothetical protein
1388	 33.72	-1	1389493..1390008	-	171	21910924	-	SpyM3_1388	-	hypothetical protein
1389	 36.12	0	1390089..1390697	+	202	21910925	recU	SpyM3_1389	-	Holliday junction-specific endonuclease
1390	 38.87	0	1390684..1392849	+	721	21910926	pbp1A	SpyM3_1390	-	putative penicillin-binding protein 1A
1391	 39.24	0	1393316..1394653	-	445	21910927	pepC	SpyM3_1391	-	putative aminopeptidase C
1392	 42.30	0	1394838..1395662	-	274	21910928	nadE	SpyM3_1392	-	NAD synthetase
1393	 40.04	0	1395659..1397119	-	486	21910929	-	SpyM3_1393	-	nicotinate phosphoribosyltransferase
1394	 39.78	0	1397289..1398668	-	459	21910930	aapA	SpyM3_1394	-	putative amino acid permease
1395	 39.54	0	1398837..1399754	-	305	21910931	nox.2	SpyM3_1395	-	putative thioredoxin reductase
1396	 30.22	-2	1399818..1400042	-	74	21910932	-	SpyM3_1396	-	hypothetical protein
1397	 39.92	0	1400146..1400889	-	247	21910933	-	SpyM3_1397	-	amino acid ABC transporter ATP-binding protein
1398	 39.30	0	1400889..1401692	-	267	21910934	-	SpyM3_1398	-	putative amino acid ABC transproter (permease protein)
1399	 41.89	0	1401887..1403230	-	447	21910935	-	SpyM3_1399	-	ATP-dependent RNA helicase
1400	 38.08	0	1403388..1404398	-	336	21910936	mraY	SpyM3_1400	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1401	 37.48	0	1404400..1406568	-	722	21910937	pbp2X	SpyM3_1401	-	putative penicillin binding protein 2X
1402	 34.18	-1	1406659..1407012	-	117	21910938	ftsL	SpyM3_1402	-	putative cell division protein
1403	 39.55	0	1406987..1408000	-	337	21910939	mraW	SpyM3_1403	-	S-adenosyl-methyltransferase MraW
1404	 39.39	0	1408024..1408188	-	54	21910940	-	SpyM3_1404	-	hypothetical protein
1405	 34.83	-1	1408290..1408490	-	66	21910941	-	SpyM3_1405	-	hypothetical protein
1406	 42.61	+1	1408471..1409721	-	416	21910942	proA	SpyM3_1406	-	gamma-glutamyl phosphate reductase
1407	 39.54	0	1409714..1410535	-	273	21910943	proB	SpyM3_1407	-	gamma-glutamyl kinase
1408	 41.53	0	1410725..1410907	-	60	21910944	-	SpyM3_1408	-	hypothetical protein
1409	 36.19	0	1411146..1412126	+	326	21910945	sdn	SpyM3_1409	-	streptodornase (Sdn) - phage associated
1410	 31.73	-1	1412441..1412815	-	124	21910946	-	SpyM3_1410	-	hypothetical protein
1411	 46.26	+2	1413077..1413811	-	244	21910947	-	SpyM3_1411	-	putative cell wall hydrolase, lysin - phage associated
1412	 40.74	0	1414091..1414279	-	62	21910948	-	SpyM3_1412	-	putative cell wall hydrolase, lysin - phage associated
1413	 39.47	0	1414395..1414622	-	75	21910949	-	SpyM3_1413	-	putative holin - phage associated
1414	 37.73	0	1414619..1414891	-	90	21910950	-	SpyM3_1414	-	hypothetical protein
1415	 43.20	+1	1414901..1415518	-	205	21910951	-	SpyM3_1415	-	hypothetical protein
1416	 37.21	0	1415515..1415952	-	145	21910952	-	SpyM3_1416	-	hypothetical protein
1417	 43.45	+1	1415964..1417979	-	671	21910953	-	SpyM3_1417	-	hypothetical protein
1418	 38.39	0	1417989..1418996	-	335	21910954	hylP.6	SpyM3_1418	-	putative hyaluronidase - phage associated
1419	 41.01	0	1418993..1420972	-	659	21910955	-	SpyM3_1419	-	hypothetical protein
1420	 37.96	0	1420982..1421824	-	280	21910956	-	SpyM3_1420	-	hypothetical protein
1421	 43.30	+1	1421836..1426218	-	1460	21910957	-	SpyM3_1421	-	putative tail protein - phage associated
1422	 37.61	0	1426233..1426466	-	77	21910958	-	SpyM3_1422	-	hypothetical protein
1423	 36.84	0	1426541..1426996	-	151	21910959	-	SpyM3_1423	-	hypothetical protein
1424	 39.83	0	1427050..1427649	-	199	21910960	-	SpyM3_1424	-	hypothetical protein
1425	 33.89	-1	1427661..1428020	-	119	21910961	-	SpyM3_1425	-	hypothetical protein
1426	 41.59	0	1428024..1428350	-	108	21910962	-	SpyM3_1426	-	hypothetical protein
1427	 35.84	0	1428365..1428643	-	92	21910963	-	SpyM3_1427	-	hypothetical protein
1428	 37.82	0	1428654..1429010	-	118	21910964	-	SpyM3_1428	-	hypothetical protein
1429	 39.86	0	1429022..1429909	-	295	21910965	-	SpyM3_1429	-	hypothetical protein
1430	 41.75	0	1429922..1430491	-	189	21910966	-	SpyM3_1430	-	hypothetical protein
1431	 37.83	0	1430659..1430925	-	88	21910967	-	SpyM3_1431	-	hypothetical protein
1432	 34.39	-1	1430930..1431118	-	62	21910968	-	SpyM3_1432	-	hypothetical protein
1433	 35.75	0	1431146..1432594	-	482	21910969	-	SpyM3_1433	-	hypothetical protein
1434	 37.62	0	1432554..1434023	-	489	21910970	-	SpyM3_1434	-	hypothetical protein
1435	 36.15	0	1434102..1435379	-	425	21910971	-	SpyM3_1435	-	putative terminase large subunit - phage associated
1436	 41.44	0	1435369..1435800	-	143	21910972	-	SpyM3_1436	-	putative terminase small subunit - phage associated
1437	 36.69	0	1435911..1436327	-	138	21910973	-	SpyM3_1437	-	putative transcriptional activator - phage associated
1438	 38.46	0	1436460..1436732	-	90	21910974	-	SpyM3_1438	-	hypothetical protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.