IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1273	 45.11	+1	1278630..1281278	-	882	21910809	valS	SpyM3_1273	-	valyl-tRNA synthetase
1274	 38.19	0	1281280..1281588	-	102	21910810	-	SpyM3_1274	-	hypothetical protein
1275	 42.08	0	1281613..1281795	-	60	21910811	-	SpyM3_1275	-	hypothetical protein
1276	 50.39	+2	1281792..1281920	-	42	21910812	-	SpyM3_1276	-	hypothetical protein
1277	 41.16	0	1282396..1282791	-	131	21910813	-	SpyM3_1277	-	hypothetical protein
1278	 34.90	0	1282812..1283066	-	84	21910814	-	SpyM3_1278	-	hypothetical protein
1279	 40.77	0	1283545..1284297	+	250	21910815	aroA.2	SpyM3_1279	-	3-deoxy-7-phosphoheptulonate synthase
1280	 42.27	0	1284353..1285426	+	357	21910816	aroB	SpyM3_1280	-	3-dehydroquinate synthase
1281	 37.58	0	1285862..1286167	-	101	21910817	-	SpyM3_1281	-	putative acetate kinase
1282	 41.00	0	1286169..1286507	-	112	21910818	-	SpyM3_1282	-	hypothetical protein
1283	 41.53	0	1286560..1287315	-	251	21910819	-	SpyM3_1283	-	SAM-dependent methyltransferase
1284	 46.30	+2	1287568..1288446	-	292	21910820	aroE.1	SpyM3_1284	-	putative shikimate 5-dehydrogenase
1285	 43.99	+1	1288584..1292000	-	1138	21910821	-	SpyM3_1285	-	putative beta-galactosidase
1286	 38.38	0	1292020..1293504	-	494	21910822	-	SpyM3_1286	-	putative two-component sensor response regulator
1287	 40.58	0	1293504..1295228	-	574	21910823	-	SpyM3_1287	-	putative two-component sensor histidine kinase
1288	 36.96	0	1295218..1295823	-	201	21910824	-	SpyM3_1288	-	hypothetical protein
1289	 39.14	0	1296129..1297574	-	481	21910825	-	SpyM3_1289	-	putative sugar ABC transporter substrate binding protein
1290	 39.59	0	1297655..1298581	-	308	21910826	-	SpyM3_1290	-	putative sugar ABC transporter permease protein
1291	 38.70	0	1298591..1299541	-	316	21910827	-	SpyM3_1291	-	putative sugar ABC transporter substrate binding protein
1292	 44.60	+1	1299737..1300615	+	292	21910828	-	SpyM3_1292	-	putative sugar kinase
1293	 44.91	+1	1301226..1302668	-	480	21910829	-	SpyM3_1293	-	putative beta-glucosidase
1294	 41.83	0	1302692..1304386	-	564	21910830	hyl	SpyM3_1294	-	putative hyaluronidase
1295	 41.02	0	1304437..1305477	-	346	21910831	-	SpyM3_1295	-	putative transcription regulator (LacI family)
1296	 43.99	+1	1305790..1306896	+	368	21910832	-	SpyM3_1296	-	hypothetical protein
1297	 44.27	+1	1306911..1309616	+	901	21910833	-	SpyM3_1297	-	putative sugar hydrolase
1298	 31.81	-1	1309821..1311071	-	416	21910834	-	SpyM3_1298	-	putative two-component response regulator histidine kinase
1299	 42.04	0	1311736..1313091	-	451	21910835	-	SpyM3_1299	-	putative RNA methyltransferase
1300	 35.52	0	1313282..1313464	-	60	21910836	-	SpyM3_1300	-	hypothetical protein
1301	 30.03	-2	1313684..1314439	+	251	21910837	speA3	SpyM3_1301	-	exotoxin type A precursor - phage associated
1302	 37.58	0	1314561..1315220	-	219	21910838	-	SpyM3_1302	-	hypothetical protein
1303	 37.84	0	1315220..1315441	-	73	21910839	-	SpyM3_1303	-	hypothetical protein
1304	 37.21	0	1315451..1316224	-	257	21910840	-	SpyM3_1304	-	hypothetical protein
1305	 36.15	0	1316235..1316837	-	200	21910841	-	SpyM3_1305	-	hypothetical protein
1306	 43.14	+1	1316849..1317613	-	254	21910842	-	SpyM3_1306	-	putative cell wall hydrolase, lysin - phage associated
1307	 37.84	0	1317615..1317947	-	110	21910843	-	SpyM3_1307	-	putative holin - phage associated
1308	 30.30	-2	1318283..1318447	-	54	21910844	-	SpyM3_1308	-	hypothetical protein
1309	 36.21	0	1318419..1318766	-	115	21910845	-	SpyM3_1309	-	hypothetical protein
1310	 41.13	0	1318777..1320546	-	589	21910846	-	SpyM3_1310	-	putative minor structural protein - phage associated
1311	 41.09	0	1320644..1324084	-	1146	21910847	-	SpyM3_1311	-	putative tail protein - phage associated
1312	 38.38	0	1324085..1325569	-	494	21910848	-	SpyM3_1312	-	putative minor structural protein - phage associated
1313	 42.08	0	1325570..1327375	-	601	21910849	-	SpyM3_1313	-	putative platlet-binding protein, minor tail fiber protein - phage associated
1314	 41.18	0	1327368..1327826	-	152	21910850	-	SpyM3_1314	-	hypothetical protein
1315	 37.42	0	1327799..1328116	-	105	21910851	-	SpyM3_1315	-	hypothetical protein
1316	 38.46	0	1328129..1328635	-	168	21910852	-	SpyM3_1316	-	hypothetical protein
1317	 40.15	0	1328647..1329057	-	136	21910853	-	SpyM3_1317	-	hypothetical protein
1318	 42.45	+1	1329059..1329442	-	127	21910854	-	SpyM3_1318	-	hypothetical protein
1319	 41.35	0	1329451..1329762	-	103	21910855	-	SpyM3_1319	-	hypothetical protein
1320	 37.97	0	1329759..1330103	-	114	21910856	-	SpyM3_1320	-	hypothetical protein
1321	 39.46	0	1330117..1330410	-	97	21910857	-	SpyM3_1321	-	hypothetical protein
1322	 40.40	0	1330423..1331313	-	296	21910858	-	SpyM3_1322	-	hypothetical protein
1323	 39.44	0	1331331..1331903	-	190	21910859	-	SpyM3_1323	-	hypothetical protein
1324	 35.58	0	1332053..1332319	-	88	21910860	-	SpyM3_1324	-	hypothetical protein
1325	 39.05	0	1332326..1333234	-	302	21910861	-	SpyM3_1325	-	hypothetical protein
1326	 39.38	0	1333203..1334492	-	429	21910862	-	SpyM3_1326	-	hypothetical protein
1327	 40.51	0	1334528..1335349	-	273	21910863	-	SpyM3_1327	-	putative terminase large subunit - phage associated
1328	 38.14	0	1335536..1335826	-	96	21910864	-	SpyM3_1328	-	putative terminase large subunit - phage associated
1329	 38.94	0	1335792..1336148	-	118	21910865	-	SpyM3_1329	-	hypothetical protein
1330	 41.84	0	1336782..1337216	-	144	21910866	-	SpyM3_1330	-	hypothetical protein
1331	 37.50	0	1337667..1338170	-	167	21910867	-	SpyM3_1331	-	hypothetical protein
1332	 34.95	0	1338457..1338642	-	61	21910868	-	SpyM3_1332	-	hypothetical protein
1333	 29.76	-2	1338808..1339143	-	111	21910869	-	SpyM3_1333	-	hypothetical protein
1334	 36.84	0	1339427..1339597	-	56	21910870	-	SpyM3_1334	-	hypothetical protein
1335	 37.68	0	1339594..1340007	-	137	21910871	-	SpyM3_1335	-	hypothetical protein
1336	 40.00	0	1340004..1340288	-	94	21910872	-	SpyM3_1336	-	hypothetical protein
1337	 38.94	0	1340530..1340886	-	118	21910873	-	SpyM3_1337	-	hypothetical protein
1338	 39.25	0	1340870..1341190	-	106	21910874	-	SpyM3_1338	-	hypothetical protein
1339	 35.38	0	1341435..1342313	-	292	21910875	-	SpyM3_1339	-	putative DNA primase - phage associated
1340	 36.76	0	1342361..1342915	-	184	21910876	-	SpyM3_1340	-	putative DNA primase - phage associated
1341	 38.56	0	1342905..1343708	-	267	21910877	-	SpyM3_1341	-	hypothetical protein
1342	 34.42	-1	1343720..1344178	-	152	21910878	-	SpyM3_1342	-	hypothetical protein
1343	 39.02	0	1344194..1345423	-	409	21910879	-	SpyM3_1343	-	putative helicase - phage associated
1344	 36.27	0	1345525..1346205	-	226	21910880	-	SpyM3_1344	-	hypothetical protein
1345	 32.92	-1	1346206..1346688	-	160	21910881	-	SpyM3_1345	-	hypothetical protein
1346	 35.24	0	1346917..1347231	-	104	21910882	-	SpyM3_1346	-	hypothetical protein
1347	 31.16	-1	1347247..1347384	-	45	21910883	-	SpyM3_1347	-	hypothetical protein
1348	 35.32	0	1347415..1347666	-	83	21910884	-	SpyM3_1348	-	hypothetical protein
1349	 37.44	0	1347761..1347979	-	72	21910885	-	SpyM3_1349	-	putative Cro-like repressor - phage associated
1350	 40.00	0	1348168..1348527	+	119	21910886	-	SpyM3_1350	-	putative cI-like repressor - phage associated
1351	 31.75	-1	1348511..1348888	+	125	21910887	-	SpyM3_1351	-	cI-like repressor
1352	 32.68	-1	1348899..1349051	+	50	21910888	-	SpyM3_1352	-	hypothetical protein
1353	 28.09	-2	1349320..1349910	+	196	21910889	-	SpyM3_1353	-	hypothetical protein
1354	 35.22	0	1350084..1351250	+	388	21910890	int315.5	SpyM3_1354	-	putative phage integrase - phage associated
1355	 35.39	0	1351398..1352174	+	258	21910891	recX	SpyM3_1355	-	recombination regulator RecX
1356	 36.33	0	1352254..1352787	+	177	21910892	-	SpyM3_1356	-	hypothetical protein
1357	 36.20	0	1353157..1353435	+	92	21910893	-	SpyM3_1357	-	hypothetical protein
1358	 35.52	0	1360561..1361109	-	182	21910894	-	SpyM3_1358	-	putative ribosomal subunit interface protein
1359	 32.88	-1	1361189..1361854	-	221	21910895	comFC	SpyM3_1359	-	putative late competence protein
1360	 36.32	0	1361826..1362059	-	77	21910896	-	SpyM3_1360	-	putative late competence protein required for DNA uptake
1361	 36.52	0	1362086..1362994	-	302	21910897	-	SpyM3_1361	-	putative late competence protein required for DNA uptake
1362	 34.41	-1	1363190..1363837	+	215	21910898	-	SpyM3_1362	-	hypothetical protein
1363	 39.49	0	1363965..1364906	+	313	21910899	cysM	SpyM3_1363	-	putative O-acetylserine lyase
1364	 38.10	0	1364924..1365301	-	125	21910900	-	SpyM3_1364	-	hypothetical protein
1365	 40.69	0	1365301..1366701	-	466	21910901	-	SpyM3_1365	-	putative Cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type
1366	 39.56	0	1366738..1367379	-	213	21910902	-	SpyM3_1366	-	putative two-component response regulator
1367	 34.43	-1	1367372..1368376	-	334	21910903	-	SpyM3_1367	-	putative two-component sensor histidine kinase
1368	 31.46	-1	1368373..1369065	-	230	21910904	-	SpyM3_1368	-	hypothetical protein
1369	 39.76	0	1369188..1371086	-	632	21910905	-	SpyM3_1369	-	putative serine/threonine kinase
1370	 38.60	0	1371083..1371823	-	246	21910906	pppL	SpyM3_1370	-	putative phosphoprotein phosphatase
1371	 39.08	0	1371861..1373183	-	440	21910907	sunL	SpyM3_1371	-	16S rRNA m(5)C 967 methyltransferase
1372	 37.93	0	1373173..1374108	-	311	21910908	fmt	SpyM3_1372	-	methionyl-tRNA formyltransferase
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.