IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1237	 46.12	+2	1258444..1258701	+	85	21910773	-	SpyM3_1237	-	hypothetical protein
1238	 44.32	+1	1258600..1258863	-	87	21910774	-	SpyM3_1238	-	hypothetical protein
1239	 45.83	+1	1258973..1259212	-	79	21910775	-	SpyM3_1239	-	hypothetical protein
1240	 38.32	0	1259340..1259780	-	146	21910776	-	SpyM3_1240	-	hypothetical protein
1241	 40.63	0	1260221..1260727	-	168	21910777	-	SpyM3_1241	-	hypothetical protein
1242	 37.43	0	1260724..1260894	-	56	21910778	-	SpyM3_1242	-	hypothetical protein
1243	 36.05	0	1260891..1261295	-	134	21910779	-	SpyM3_1243	-	hypothetical protein
1244	 27.04	-2	1261305..1261574	-	89	21910780	-	SpyM3_1244	-	hypothetical protein
1245	 41.75	0	1261571..1261855	-	94	21910781	-	SpyM3_1245	-	hypothetical protein
1246	 35.71	0	1261849..1262100	-	83	21910782	-	SpyM3_1246	-	hypothetical protein
1247	 37.25	0	1262097..1262453	-	118	21910783	-	SpyM3_1247	-	hypothetical protein
1248	 38.78	0	1262450..1262890	-	146	21910784	-	SpyM3_1248	-	hypothetical protein
1249	 41.90	0	1263099..1263518	-	139	21910785	-	SpyM3_1249	-	putative single-strand DNA-binding protein - phage associated
1250	 37.78	0	1263511..1264185	-	224	21910786	-	SpyM3_1250	-	putative recombination protein - phage associated
1251	 33.95	-1	1264186..1264668	-	160	21910787	-	SpyM3_1251	-	hypothetical protein
1252	 39.61	0	1264690..1264944	-	84	21910788	-	SpyM3_1252	-	hypothetical protein
1253	 35.90	0	1265092..1265325	-	77	21910789	-	SpyM3_1253	-	hypothetical protein
1254	 36.23	0	1265306..1265719	-	137	21910790	-	SpyM3_1254	-	hypothetical protein
1255	 40.08	0	1265841..1266092	-	83	21910791	-	SpyM3_1255	-	putative replication protein - phage associated
1256	 34.95	0	1266192..1266377	-	61	21910792	-	SpyM3_1256	-	hypothetical protein
1257	 34.20	-1	1266406..1266750	-	114	21910793	-	SpyM3_1257	-	hypothetical protein
1258	 40.78	0	1266909..1267163	-	84	21910794	-	SpyM3_1258	-	hypothetical protein
1259	 35.82	0	1267152..1267352	+	66	21910795	-	SpyM3_1259	-	hypothetical protein
1260	 40.00	0	1267349..1267498	-	49	21910796	-	SpyM3_1260	-	hypothetical protein
1261	 38.55	0	1267531..1268259	-	242	21910797	-	SpyM3_1261	-	putative P1-type antirepressor - phage associated
1262	 35.42	0	1268270..1268461	-	63	21910798	-	SpyM3_1262	-	hypothetical protein
1263	 36.67	0	1269257..1269616	+	119	21910799	-	SpyM3_1263	-	putative repressor - phage associated
1264	 35.17	0	1269630..1270010	+	126	21910800	-	SpyM3_1264	-	hypothetical protein
1265	 30.08	-2	1270021..1270542	+	173	21910801	-	SpyM3_1265	-	hypothetical protein
1266	 37.49	0	1270661..1271815	+	384	21910802	int315.4	SpyM3_1266	-	putative integrase - phage associated
1267	 41.46	0	1271926..1273032	-	368	21910803	msrA.1	SpyM3_1267	-	bifunctional methionine sulfoxide reductase A/B protein
1268	 39.10	0	1273075..1273698	-	207	21910804	-	SpyM3_1268	-	hypothetical protein
1269	 38.96	0	1273711..1274421	-	236	21910805	ccdA	SpyM3_1269	-	putative cytochrome C-type biogenesis protein
1270	 41.59	0	1274642..1275574	-	310	21910806	-	SpyM3_1270	-	putative divalent cation transport protein
1271	 46.88	+2	1275666..1276625	-	319	21910807	-	SpyM3_1271	-	putative oxidoreductase
1272	 31.03	-2	1277635..1278414	+	259	21910808	-	SpyM3_1272	-	hypothetical protein
1273	 45.11	+1	1278630..1281278	-	882	21910809	valS	SpyM3_1273	-	valyl-tRNA synthetase
1274	 38.19	0	1281280..1281588	-	102	21910810	-	SpyM3_1274	-	hypothetical protein
1275	 42.08	0	1281613..1281795	-	60	21910811	-	SpyM3_1275	-	hypothetical protein
1276	 50.39	+2	1281792..1281920	-	42	21910812	-	SpyM3_1276	-	hypothetical protein
1277	 41.16	0	1282396..1282791	-	131	21910813	-	SpyM3_1277	-	hypothetical protein
1278	 34.90	0	1282812..1283066	-	84	21910814	-	SpyM3_1278	-	hypothetical protein
1279	 40.77	0	1283545..1284297	+	250	21910815	aroA.2	SpyM3_1279	-	3-deoxy-7-phosphoheptulonate synthase
1280	 42.27	0	1284353..1285426	+	357	21910816	aroB	SpyM3_1280	-	3-dehydroquinate synthase
1281	 37.58	0	1285862..1286167	-	101	21910817	-	SpyM3_1281	-	putative acetate kinase
1282	 41.00	0	1286169..1286507	-	112	21910818	-	SpyM3_1282	-	hypothetical protein
1283	 41.53	0	1286560..1287315	-	251	21910819	-	SpyM3_1283	-	SAM-dependent methyltransferase
1284	 46.30	+2	1287568..1288446	-	292	21910820	aroE.1	SpyM3_1284	-	putative shikimate 5-dehydrogenase
1285	 43.99	+1	1288584..1292000	-	1138	21910821	-	SpyM3_1285	-	putative beta-galactosidase
1286	 38.38	0	1292020..1293504	-	494	21910822	-	SpyM3_1286	-	putative two-component sensor response regulator
1287	 40.58	0	1293504..1295228	-	574	21910823	-	SpyM3_1287	-	putative two-component sensor histidine kinase
1288	 36.96	0	1295218..1295823	-	201	21910824	-	SpyM3_1288	-	hypothetical protein
1289	 39.14	0	1296129..1297574	-	481	21910825	-	SpyM3_1289	-	putative sugar ABC transporter substrate binding protein
1290	 39.59	0	1297655..1298581	-	308	21910826	-	SpyM3_1290	-	putative sugar ABC transporter permease protein
1291	 38.70	0	1298591..1299541	-	316	21910827	-	SpyM3_1291	-	putative sugar ABC transporter substrate binding protein
1292	 44.60	+1	1299737..1300615	+	292	21910828	-	SpyM3_1292	-	putative sugar kinase
1293	 44.91	+1	1301226..1302668	-	480	21910829	-	SpyM3_1293	-	putative beta-glucosidase
1294	 41.83	0	1302692..1304386	-	564	21910830	hyl	SpyM3_1294	-	putative hyaluronidase
1295	 41.02	0	1304437..1305477	-	346	21910831	-	SpyM3_1295	-	putative transcription regulator (LacI family)
1296	 43.99	+1	1305790..1306896	+	368	21910832	-	SpyM3_1296	-	hypothetical protein
1297	 44.27	+1	1306911..1309616	+	901	21910833	-	SpyM3_1297	-	putative sugar hydrolase
1298	 31.81	-1	1309821..1311071	-	416	21910834	-	SpyM3_1298	-	putative two-component response regulator histidine kinase
1299	 42.04	0	1311736..1313091	-	451	21910835	-	SpyM3_1299	-	putative RNA methyltransferase
1300	 35.52	0	1313282..1313464	-	60	21910836	-	SpyM3_1300	-	hypothetical protein
1301	 30.03	-2	1313684..1314439	+	251	21910837	speA3	SpyM3_1301	-	exotoxin type A precursor - phage associated
1302	 37.58	0	1314561..1315220	-	219	21910838	-	SpyM3_1302	-	hypothetical protein
1303	 37.84	0	1315220..1315441	-	73	21910839	-	SpyM3_1303	-	hypothetical protein
1304	 37.21	0	1315451..1316224	-	257	21910840	-	SpyM3_1304	-	hypothetical protein
1305	 36.15	0	1316235..1316837	-	200	21910841	-	SpyM3_1305	-	hypothetical protein
1306	 43.14	+1	1316849..1317613	-	254	21910842	-	SpyM3_1306	-	putative cell wall hydrolase, lysin - phage associated
1307	 37.84	0	1317615..1317947	-	110	21910843	-	SpyM3_1307	-	putative holin - phage associated
1308	 30.30	-2	1318283..1318447	-	54	21910844	-	SpyM3_1308	-	hypothetical protein
1309	 36.21	0	1318419..1318766	-	115	21910845	-	SpyM3_1309	-	hypothetical protein
1310	 41.13	0	1318777..1320546	-	589	21910846	-	SpyM3_1310	-	putative minor structural protein - phage associated
1311	 41.09	0	1320644..1324084	-	1146	21910847	-	SpyM3_1311	-	putative tail protein - phage associated
1312	 38.38	0	1324085..1325569	-	494	21910848	-	SpyM3_1312	-	putative minor structural protein - phage associated
1313	 42.08	0	1325570..1327375	-	601	21910849	-	SpyM3_1313	-	putative platlet-binding protein, minor tail fiber protein - phage associated
1314	 41.18	0	1327368..1327826	-	152	21910850	-	SpyM3_1314	-	hypothetical protein
1315	 37.42	0	1327799..1328116	-	105	21910851	-	SpyM3_1315	-	hypothetical protein
1316	 38.46	0	1328129..1328635	-	168	21910852	-	SpyM3_1316	-	hypothetical protein
1317	 40.15	0	1328647..1329057	-	136	21910853	-	SpyM3_1317	-	hypothetical protein
1318	 42.45	+1	1329059..1329442	-	127	21910854	-	SpyM3_1318	-	hypothetical protein
1319	 41.35	0	1329451..1329762	-	103	21910855	-	SpyM3_1319	-	hypothetical protein
1320	 37.97	0	1329759..1330103	-	114	21910856	-	SpyM3_1320	-	hypothetical protein
1321	 39.46	0	1330117..1330410	-	97	21910857	-	SpyM3_1321	-	hypothetical protein
1322	 40.40	0	1330423..1331313	-	296	21910858	-	SpyM3_1322	-	hypothetical protein
1323	 39.44	0	1331331..1331903	-	190	21910859	-	SpyM3_1323	-	hypothetical protein
1324	 35.58	0	1332053..1332319	-	88	21910860	-	SpyM3_1324	-	hypothetical protein
1325	 39.05	0	1332326..1333234	-	302	21910861	-	SpyM3_1325	-	hypothetical protein
1326	 39.38	0	1333203..1334492	-	429	21910862	-	SpyM3_1326	-	hypothetical protein
1327	 40.51	0	1334528..1335349	-	273	21910863	-	SpyM3_1327	-	putative terminase large subunit - phage associated
1328	 38.14	0	1335536..1335826	-	96	21910864	-	SpyM3_1328	-	putative terminase large subunit - phage associated
1329	 38.94	0	1335792..1336148	-	118	21910865	-	SpyM3_1329	-	hypothetical protein
1330	 41.84	0	1336782..1337216	-	144	21910866	-	SpyM3_1330	-	hypothetical protein
1331	 37.50	0	1337667..1338170	-	167	21910867	-	SpyM3_1331	-	hypothetical protein
1332	 34.95	0	1338457..1338642	-	61	21910868	-	SpyM3_1332	-	hypothetical protein
1333	 29.76	-2	1338808..1339143	-	111	21910869	-	SpyM3_1333	-	hypothetical protein
1334	 36.84	0	1339427..1339597	-	56	21910870	-	SpyM3_1334	-	hypothetical protein
1335	 37.68	0	1339594..1340007	-	137	21910871	-	SpyM3_1335	-	hypothetical protein
1336	 40.00	0	1340004..1340288	-	94	21910872	-	SpyM3_1336	-	hypothetical protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.