IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1124	 36.43	0	1160173..1160592	-	139	21910660	-	SpyM3_1124	-	hypothetical protein
1125	 27.78	-2	1160668..1160919	-	83	21910661	-	SpyM3_1125	-	hypothetical protein
1126	 35.26	0	1160916..1161071	-	51	21910662	-	SpyM3_1126	-	hypothetical protein
1127	 38.99	0	1161068..1161385	-	105	21910663	-	SpyM3_1127	-	hypothetical protein
1128	 38.79	0	1161421..1161933	-	170	21910664	-	SpyM3_1128	-	hypothetical protein
1129	 33.03	-1	1161930..1162262	-	110	21910665	-	SpyM3_1129	-	hypothetical protein
1130	 37.12	0	1162273..1163619	-	448	21910666	-	SpyM3_1130	-	hypothetical protein
1131	 37.37	0	1163616..1164011	-	131	21910667	-	SpyM3_1131	-	hypothetical protein
1132	 41.73	0	1164376..1165173	-	265	21910668	-	SpyM3_1132	-	hypothetical protein
1133	 32.34	-1	1165166..1165366	-	66	21910669	-	SpyM3_1133	-	hypothetical protein
1134	 37.86	0	1165363..1166289	-	308	21910670	recT	SpyM3_1134	-	putative recombinase - phage associated
1135	 37.91	0	1166292..1166444	-	50	21910671	-	SpyM3_1135	-	hypothetical protein
1136	 29.31	-2	1166449..1166622	-	57	21910672	-	SpyM3_1136	-	hypothetical protein
1137	 41.06	0	1166678..1166884	-	68	21910673	-	SpyM3_1137	-	hypothetical protein
1138	 35.47	0	1167030..1167263	-	77	21910674	-	SpyM3_1138	-	hypothetical protein
1139	 36.43	0	1167244..1167630	-	128	21910675	-	SpyM3_1139	-	hypothetical protein
1140	 38.71	0	1168134..1168319	-	61	21910676	-	SpyM3_1140	-	hypothetical protein
1141	 35.26	0	1168321..1168632	-	103	21910677	xis	SpyM3_1141	-	putative excisionase - phage associated
1142	 34.27	-1	1168902..1169114	-	70	21910678	-	SpyM3_1142	-	putative Cro-like repressor protein - phage associated
1143	 36.77	0	1169316..1170071	+	251	21910679	-	SpyM3_1143	-	putative cI-like repressor - phage associated
1144	 32.56	-1	1170083..1170601	+	172	21910680	-	SpyM3_1144	-	hypothetical protein
1145	 35.43	0	1170725..1171867	+	380	21910681	-	SpyM3_1145	-	putative integrase - phage associated
1146	 40.58	0	1171956..1172231	-	91	21910682	-	SpyM3_1146	-	putative histone-like DNA-binding protein
1147	 31.97	-1	1172330..1172917	-	195	21910683	-	SpyM3_1147	-	hypothetical protein
1148	 32.62	-1	1172895..1173737	-	280	21910684	-	SpyM3_1148	-	hypothetical protein
1149	 37.86	0	1173730..1174569	-	279	21910685	-	SpyM3_1149	-	hypothetical protein
1150	 36.61	0	1174797..1175741	-	314	21910686	-	SpyM3_1150	-	hypothetical protein
1151	 39.35	0	1175913..1177574	-	553	21910687	recN	SpyM3_1151	-	putative DNA repair and genetic recombination protein
1152	 34.18	-1	1177596..1178066	-	156	21910688	-	SpyM3_1152	-	putative repressor protein
1153	 42.51	+1	1178053..1178880	-	275	21910689	hlyA	SpyM3_1153	-	putative hemolysin
1154	 41.12	0	1178873..1179745	-	290	21910690	fps	SpyM3_1154	-	putative geranyltranstransferase
1155	 34.72	-1	1179745..1179960	-	71	21910691	xseB	SpyM3_1155	-	exodeoxyribonuclease VII small subunit
1156	 42.28	0	1179938..1181278	-	446	21910692	xseA	SpyM3_1156	-	exodeoxyribonuclease VII large subunit
1157	 39.88	0	1181431..1182285	-	284	21910693	folD	SpyM3_1157	-	methenyltetrahydrofolate cyclohydrolase
1158	 38.05	0	1182493..1184187	-	564	21910694	-	SpyM3_1158	-	putative phosphomannomutase
1159	 37.30	0	1184365..1185774	-	469	21910695	phr	SpyM3_1159	-	putative deoxyribodipyrimidine photolyase
1160	 40.95	0	1185923..1186657	-	244	21910696	-	SpyM3_1160	-	putative amino acid ABC transporter ATP-binding protein
1161	 39.88	0	1186657..1187343	-	228	21910697	-	SpyM3_1161	-	putative amino acid ABC transporter (permease protein)
1162	 38.53	0	1187470..1187700	-	76	21910698	-	SpyM3_1162	-	hypothetical protein
1163	 40.65	0	1187998..1190280	+	760	21910699	clpE	SpyM3_1163	-	putative ATP-dependent protease
1164	 39.25	0	1190408..1190863	+	151	21910700	mutT	SpyM3_1164	-	MutT/NUDIX family mutator protein
1165	 33.99	-1	1190914..1191216	+	100	21910701	-	SpyM3_1165	-	hypothetical protein
1166	 41.90	0	1191481..1194282	-	933	21910702	ileS	SpyM3_1166	-	isoleucyl-tRNA synthetase
1167	 36.76	0	1194555..1195313	-	252	21910703	divIVA	SpyM3_1167	-	putative cell-division initiation protein
1168	 31.06	-2	1195323..1196114	-	263	21910704	-	SpyM3_1168	-	RNA binding protein
1169	 31.37	-1	1196114..1196368	-	84	21910705	-	SpyM3_1169	-	hypothetical protein
1170	 37.75	0	1196373..1197029	-	218	21910706	-	SpyM3_1170	-	hypothetical protein
1171	 34.38	-1	1197041..1197712	-	223	21910707	-	SpyM3_1171	-	hypothetical protein
1172	 42.20	0	1197715..1199034	-	439	21910708	ftsZ	SpyM3_1172	-	cell division protein FtsZ
1173	 39.34	0	1199058..1200422	-	454	21910709	ftsA	SpyM3_1173	-	putative cell division protein
1174	 37.86	0	1200633..1201781	-	382	21910710	divIB	SpyM3_1174	-	putative cell division protein
1175	 40.85	0	1201782..1202885	-	367	161485740	murG	SpyM3_1175	-	N-acetylglucosaminyl transferase
1176	 40.25	0	1202864..1204222	-	452	21910712	murD	SpyM3_1176	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1177	 36.51	0	1204578..1204829	-	83	21910713	-	SpyM3_1177	-	hypothetical protein
1178	 41.77	0	1204951..1206657	-	568	21910714	-	SpyM3_1178	-	putative GTP-binding protein TypA/BipA
1179	 38.46	0	1206975..1207364	-	129	21910715	-	SpyM3_1179	-	hypothetical protein
1180	 43.31	+1	1207374..1208345	-	323	21910716	glcK	SpyM3_1180	-	putative glucose kinase
1181	 33.33	-1	1208350..1208571	-	73	21910717	-	SpyM3_1181	-	hypothetical protein
1182	 39.96	0	1208695..1209222	-	175	21910718	dpr	SpyM3_1182	-	putative peroxide resistance protein
1183	 33.17	-1	1209450..1210076	+	208	21910719	-	SpyM3_1183	-	hypothetical protein
1184	 37.50	0	1210158..1211237	-	359	21910720	-	SpyM3_1184	-	hypothetical protein
1185	 33.82	-1	1211241..1211861	-	206	21910721	-	SpyM3_1185	-	hypothetical protein
1186	 37.73	0	1212309..1213286	-	325	21910722	-	SpyM3_1186	-	putative ribose transport operon repressor
1187	 38.25	0	1213700..1214737	-	345	21910723	-	SpyM3_1187	-	hypothetical protein
1188	 34.96	0	1214724..1215215	-	163	21910724	coaD	SpyM3_1188	-	phosphopantetheine adenylyltransferase
1189	 38.15	0	1215205..1215744	-	179	21910725	-	SpyM3_1189	-	putative type II DNA modification methyltransferase
1190	 40.99	0	1215867..1216859	-	330	21910726	asnA	SpyM3_1190	-	asparagine synthetase AsnA
1191	 42.59	+1	1217172..1218122	-	316	21910727	arcC	SpyM3_1191	-	carbamate kinase
1192	 41.82	0	1218142..1219473	-	443	21910728	-	SpyM3_1192	-	hypothetical protein
1193	 40.36	0	1219490..1220983	-	497	21910729	-	SpyM3_1193	-	putative arginine repressor
1194	 41.81	0	1221153..1222166	-	337	21910730	arcB	SpyM3_1194	-	ornithine carbamoyltransferase
1195	 39.63	0	1222206..1222634	-	142	21910731	-	SpyM3_1195	-	hypothetical protein
1196	 40.45	0	1222734..1223969	-	411	21910732	arcA	SpyM3_1196	-	arginine deiminase
1197	 35.83	0	1224245..1224925	-	226	21910733	-	SpyM3_1197	-	putative CRP/FNR transcriptional regulator
1198	 40.72	0	1225067..1225540	+	157	21910734	argR	SpyM3_1198	-	putative arginine repressor
1199	 41.56	0	1225707..1226423	-	238	21910735	-	SpyM3_1199	-	hypothetical protein
1200	 40.83	0	1226437..1227516	-	359	21910736	-	SpyM3_1200	-	hypothetical protein
1201	 43.37	+1	1227589..1229322	-	577	21910737	yesM	SpyM3_1201	-	putative two-component sensor histidine kinase
1202	 40.62	0	1229319..1230059	-	246	21910738	yesN	SpyM3_1202	-	putative two-component response regulator
1203	 43.17	+1	1230304..1230486	-	60	21910739	-	SpyM3_1203	-	hypothetical protein
1204	 35.24	0	1230832..1231407	-	191	21910740	sla	SpyM3_1204	-	streptococcal phospholipase A2 - phage associated
1205	 28.85	-2	1231883..1232662	-	259	21910741	speK	SpyM3_1205	-	streptococcal pyrogenic exotoxin SpeK - phage associated
1206	 32.53	-1	1232966..1233832	-	288	21910742	-	SpyM3_1206	-	hypothetical protein
1207	 34.48	-1	1233820..1234344	-	174	21910743	-	SpyM3_1207	-	hypothetical protein
1208	 44.22	+1	1234484..1235686	-	400	21910744	-	SpyM3_1208	-	putative cell wall hydrolase, lysin - phage associated
1209	 38.17	0	1235797..1235982	-	61	21910745	-	SpyM3_1209	-	hypothetical protein
1210	 39.06	0	1235979..1236275	-	98	21910746	-	SpyM3_1210	-	hypothetical protein
1211	 41.18	0	1236286..1236897	-	203	21910747	-	SpyM3_1211	-	hypothetical protein
1212	 36.57	0	1236900..1237331	-	143	21910748	-	SpyM3_1212	-	hypothetical protein
1213	 44.59	+1	1237343..1239226	-	627	21910749	-	SpyM3_1213	-	hypothetical protein
1214	 43.69	+1	1239241..1240254	-	337	21910750	hylP.4	SpyM3_1214	-	hyaluronidase - phage associated
1215	 41.31	0	1240251..1242395	-	714	21910751	-	SpyM3_1215	-	hypothetical protein
1216	 39.33	0	1242392..1243108	-	238	21910752	-	SpyM3_1216	-	hypothetical protein
1217	 43.05	+1	1243105..1246365	-	1086	21910753	-	SpyM3_1217	-	putative minor tail protein - phage associated
1218	 37.63	0	1246355..1246936	-	193	21910754	-	SpyM3_1218	-	hypothetical protein
1219	 39.54	0	1246940..1247374	-	144	21910755	-	SpyM3_1219	-	hypothetical protein
1220	 42.80	+1	1247413..1247898	-	161	21910756	-	SpyM3_1220	-	putative major tail shaft protein - phage associated
1221	 36.34	0	1247898..1248296	-	132	21910757	-	SpyM3_1221	-	putative minor capsid protein - phage associated
1222	 43.98	+1	1248293..1248649	-	118	21910758	-	SpyM3_1222	-	putative minor capsid protein - phage associated
1223	 38.84	0	1248649..1249011	-	120	21910759	-	SpyM3_1223	-	putative minor capsid protein - phage associated
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.