IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1063	 37.38	0	1106788..1107750	-	320	21910599	coiA	SpyM3_1063	-	putative competence protein
1064	 42.79	+1	1108047..1108712	-	221	21910600	-	SpyM3_1064	-	putative 16S pseudouridylate synthetase
1065	 38.87	0	1108882..1109586	-	234	21910601	nagB	SpyM3_1065	-	putative N-acetylglucosamine-6-phosphate isomerase
1066	 42.27	0	1109788..1110816	+	342	21910602	queA	SpyM3_1066	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1067	 38.57	0	1110823..1112043	+	406	21910603	-	SpyM3_1067	-	hypothetical protein
1068	 39.93	0	1112157..1112747	-	196	21910604	-	SpyM3_1068	-	hypothetical protein
1069	 42.57	+1	1112744..1112992	-	82	21910605	-	SpyM3_1069	-	hypothetical protein
1070	 37.72	0	1112977..1113204	-	75	21910606	-	SpyM3_1070	-	hypothetical protein
1071	 39.27	0	1113371..1113976	-	201	21910607	sodM	SpyM3_1071	-	superoxide dismutase
1072	 36.70	0	1114073..1115113	-	346	21910608	holA	SpyM3_1072	-	DNA polymerase III subunit delta
1073	 39.44	0	1115184..1117427	-	747	21910609	comEC	SpyM3_1073	-	putative competence protein
1074	 37.10	0	1117408..1118070	-	220	21910610	comEA	SpyM3_1074	-	putative competence protein
1075	 41.70	0	1118270..1119010	-	246	21910611	-	SpyM3_1075	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1076	 38.60	0	1119050..1119904	+	284	21910612	-	SpyM3_1076	-	hypothetical protein
1077	 36.20	0	1119894..1120172	+	92	21910613	-	SpyM3_1077	-	hypothetical protein
1078	 39.98	0	1120196..1122196	-	666	21910614	kup	SpyM3_1078	-	putative cation/potassium uptake protein
1079	 41.73	0	1122323..1123942	-	539	21910615	deaD.1	SpyM3_1079	-	putative ATP-dependent RNA helicase
1080	 39.87	0	1124249..1125793	-	514	21910616	prfC	SpyM3_1080	-	peptide chain release factor 3
1081	 32.43	-1	1125750..1125971	+	73	21910617	-	SpyM3_1081	-	hypothetical protein
1082	 35.92	0	1126041..1126736	-	231	21910618	-	SpyM3_1082	-	hypothetical protein
1083	 39.69	0	1126840..1128207	-	455	21910619	murF	SpyM3_1083	-	putative D-Ala-D-Ala adding enzyme
1084	 38.61	0	1128406..1129371	-	321	21910620	ddl	SpyM3_1084	-	D-alanyl-alanine synthetase A
1085	 41.04	0	1129553..1130149	-	198	21910621	recR	SpyM3_1085	-	recombination protein RecR
1086	 35.42	0	1130196..1130387	-	63	21910622	-	SpyM3_1086	-	hypothetical protein
1087	 38.08	0	1130948..1131727	-	259	21910623	fdhC	SpyM3_1087	-	putative formate dehydrogenase
1088	 35.73	0	1131851..1132393	-	180	21910624	-	SpyM3_1088	-	hypothetical protein
1089	 34.87	-1	1132554..1133075	-	173	21910625	-	SpyM3_1089	-	putative transcriptional regulator
1090	 41.67	0	1133182..1133877	-	231	21910626	gpmA	SpyM3_1090	-	phosphoglyceromutase
1091	 41.35	0	1134116..1135051	+	311	21910627	pyrD	SpyM3_1091	-	dihydroorotate dehydrogenase 1A
1092	 29.89	-2	1135106..1135279	-	57	21910628	-	SpyM3_1092	-	hypothetical protein
1093	 41.01	0	1135351..1137213	-	620	21910629	cadA	SpyM3_1093	-	putative heavy metal/cadmium-transporting ATPase
1094	 40.98	0	1137743..1137925	-	60	21910630	-	SpyM3_1094	-	hypothetical protein
1095	 34.72	-1	1137992..1138786	-	264	21910631	mf4	SpyM3_1095	-	putative mitogenic factor - phage associated
1096	 44.28	+1	1139031..1140245	-	404	21910632	-	SpyM3_1096	-	putative N-acetylmuramoyl-L-alanine amidase, lysin - phage associated
1097	 37.50	0	1140357..1140812	-	151	21910633	-	SpyM3_1097	-	putative holin protein - phage associated
1098	 41.30	0	1140823..1141437	-	204	21910634	-	SpyM3_1098	-	hypothetical protein
1099	 36.81	0	1141440..1141871	-	143	21910635	-	SpyM3_1099	-	hypothetical protein
1100	 41.02	0	1141880..1143661	-	593	21910636	-	SpyM3_1100	-	hypothetical protein
1101	 39.82	0	1143676..1144785	-	369	21910637	hylP.3	SpyM3_1101	-	hyaluronoglucosaminidase - phage associated
1102	 40.02	0	1144785..1146758	-	657	21910638	pblB	SpyM3_1102	-	putative platelet-binding protein - phage associated
1103	 37.93	0	1146740..1147435	-	231	21910639	-	SpyM3_1103	-	hypothetical protein
1104	 40.10	0	1147432..1149795	-	787	21910640	pblA	SpyM3_1104	-	putative human platelet-binding protein - phage associated
1105	 37.63	0	1149795..1150166	-	123	21910641	-	SpyM3_1105	-	hypothetical protein
1106	 33.33	-1	1150181..1150444	-	87	21910642	-	SpyM3_1106	-	hypothetical protein
1107	 35.87	0	1150455..1151045	-	196	21910643	-	SpyM3_1107	-	putative structural protein - phage associated
1108	 35.71	0	1151061..1151396	-	111	21910644	-	SpyM3_1108	-	hypothetical protein
1109	 39.26	0	1151397..1151666	-	89	21910645	-	SpyM3_1109	-	hypothetical protein
1110	 38.05	0	1151626..1151964	-	112	21910646	-	SpyM3_1110	-	hypothetical protein
1111	 39.24	0	1151924..1152346	-	140	21910647	-	SpyM3_1111	-	hypothetical protein
1112	 40.80	0	1152356..1152556	-	66	21910648	-	SpyM3_1112	-	hypothetical protein
1113	 40.13	0	1152556..1153467	-	303	21910649	-	SpyM3_1113	-	putative structural protein - phage associated
1114	 39.83	0	1153492..1153953	-	153	21910650	-	SpyM3_1114	-	hypothetical protein
1115	 40.04	0	1154034..1155449	-	471	21910651	-	SpyM3_1115	-	putative terminase - phage associated
1116	 36.30	0	1155531..1155800	-	89	21910652	-	SpyM3_1116	-	hypothetical protein
1117	 37.45	0	1155748..1156014	-	88	21910653	-	SpyM3_1117	-	hypothetical protein
1118	 32.68	-1	1156007..1156159	-	50	21910654	-	SpyM3_1118	-	hypothetical protein
1119	 37.61	0	1156236..1156469	-	77	21910655	-	SpyM3_1119	-	hypothetical protein
1120	 36.41	0	1156466..1157959	-	497	21910656	-	SpyM3_1120	-	hypothetical protein
1121	 41.45	0	1157952..1159220	-	422	21910657	-	SpyM3_1121	-	putative structural protein - phage associated
1122	 31.09	-2	1159217..1159573	-	118	21910658	-	SpyM3_1122	-	hypothetical protein
1123	 41.45	0	1159721..1160065	-	114	21910659	-	SpyM3_1123	-	hypothetical protein
1124	 36.43	0	1160173..1160592	-	139	21910660	-	SpyM3_1124	-	hypothetical protein
1125	 27.78	-2	1160668..1160919	-	83	21910661	-	SpyM3_1125	-	hypothetical protein
1126	 35.26	0	1160916..1161071	-	51	21910662	-	SpyM3_1126	-	hypothetical protein
1127	 38.99	0	1161068..1161385	-	105	21910663	-	SpyM3_1127	-	hypothetical protein
1128	 38.79	0	1161421..1161933	-	170	21910664	-	SpyM3_1128	-	hypothetical protein
1129	 33.03	-1	1161930..1162262	-	110	21910665	-	SpyM3_1129	-	hypothetical protein
1130	 37.12	0	1162273..1163619	-	448	21910666	-	SpyM3_1130	-	hypothetical protein
1131	 37.37	0	1163616..1164011	-	131	21910667	-	SpyM3_1131	-	hypothetical protein
1132	 41.73	0	1164376..1165173	-	265	21910668	-	SpyM3_1132	-	hypothetical protein
1133	 32.34	-1	1165166..1165366	-	66	21910669	-	SpyM3_1133	-	hypothetical protein
1134	 37.86	0	1165363..1166289	-	308	21910670	recT	SpyM3_1134	-	putative recombinase - phage associated
1135	 37.91	0	1166292..1166444	-	50	21910671	-	SpyM3_1135	-	hypothetical protein
1136	 29.31	-2	1166449..1166622	-	57	21910672	-	SpyM3_1136	-	hypothetical protein
1137	 41.06	0	1166678..1166884	-	68	21910673	-	SpyM3_1137	-	hypothetical protein
1138	 35.47	0	1167030..1167263	-	77	21910674	-	SpyM3_1138	-	hypothetical protein
1139	 36.43	0	1167244..1167630	-	128	21910675	-	SpyM3_1139	-	hypothetical protein
1140	 38.71	0	1168134..1168319	-	61	21910676	-	SpyM3_1140	-	hypothetical protein
1141	 35.26	0	1168321..1168632	-	103	21910677	xis	SpyM3_1141	-	putative excisionase - phage associated
1142	 34.27	-1	1168902..1169114	-	70	21910678	-	SpyM3_1142	-	putative Cro-like repressor protein - phage associated
1143	 36.77	0	1169316..1170071	+	251	21910679	-	SpyM3_1143	-	putative cI-like repressor - phage associated
1144	 32.56	-1	1170083..1170601	+	172	21910680	-	SpyM3_1144	-	hypothetical protein
1145	 35.43	0	1170725..1171867	+	380	21910681	-	SpyM3_1145	-	putative integrase - phage associated
1146	 40.58	0	1171956..1172231	-	91	21910682	-	SpyM3_1146	-	putative histone-like DNA-binding protein
1147	 31.97	-1	1172330..1172917	-	195	21910683	-	SpyM3_1147	-	hypothetical protein
1148	 32.62	-1	1172895..1173737	-	280	21910684	-	SpyM3_1148	-	hypothetical protein
1149	 37.86	0	1173730..1174569	-	279	21910685	-	SpyM3_1149	-	hypothetical protein
1150	 36.61	0	1174797..1175741	-	314	21910686	-	SpyM3_1150	-	hypothetical protein
1151	 39.35	0	1175913..1177574	-	553	21910687	recN	SpyM3_1151	-	putative DNA repair and genetic recombination protein
1152	 34.18	-1	1177596..1178066	-	156	21910688	-	SpyM3_1152	-	putative repressor protein
1153	 42.51	+1	1178053..1178880	-	275	21910689	hlyA	SpyM3_1153	-	putative hemolysin
1154	 41.12	0	1178873..1179745	-	290	21910690	fps	SpyM3_1154	-	putative geranyltranstransferase
1155	 34.72	-1	1179745..1179960	-	71	21910691	xseB	SpyM3_1155	-	exodeoxyribonuclease VII small subunit
1156	 42.28	0	1179938..1181278	-	446	21910692	xseA	SpyM3_1156	-	exodeoxyribonuclease VII large subunit
1157	 39.88	0	1181431..1182285	-	284	21910693	folD	SpyM3_1157	-	methenyltetrahydrofolate cyclohydrolase
1158	 38.05	0	1182493..1184187	-	564	21910694	-	SpyM3_1158	-	putative phosphomannomutase
1159	 37.30	0	1184365..1185774	-	469	21910695	phr	SpyM3_1159	-	putative deoxyribodipyrimidine photolyase
1160	 40.95	0	1185923..1186657	-	244	21910696	-	SpyM3_1160	-	putative amino acid ABC transporter ATP-binding protein
1161	 39.88	0	1186657..1187343	-	228	21910697	-	SpyM3_1161	-	putative amino acid ABC transporter (permease protein)
1162	 38.53	0	1187470..1187700	-	76	21910698	-	SpyM3_1162	-	hypothetical protein
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.