IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.60 STD DEV: 3.72
Streptococcus pyogenes MGAS315, complete genome - 1..1900521
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1008	 37.64	0	1048418..1049113	+	231	21910544	-	SpyM3_1008	-	hypothetical protein
1009	 35.22	0	1049118..1049276	-	52	21910545	-	SpyM3_1009	-	hypothetical protein
1010	 44.27	+1	1049345..1050652	-	435	21910546	obgE	SpyM3_1010	-	GTPase ObgE
1011	 37.18	0	1051135..1051602	+	155	21910547	-	SpyM3_1011	-	putative transposase associated protein
1012	 39.53	0	1051623..1052429	+	268	21910548	-	SpyM3_1012	-	putative transposase - IS861
1013	 42.15	0	1052729..1053601	-	290	21910549	nadC	SpyM3_1013	-	nicotinate-nucleotide pyrophosphorylase
1014	 43.40	+1	1053825..1055135	+	436	21910550	-	SpyM3_1014	-	putative integral membrane protein
1015	 36.99	0	1055213..1055458	+	81	21910551	-	SpyM3_1015	-	hypothetical protein
1016	 37.71	0	1055538..1055834	+	98	21910552	-	SpyM3_1016	-	IS1076 transposase
1017	 39.20	0	1055937..1056260	+	107	21910553	-	SpyM3_1017	-	putative transposase - IS904A
1018	 43.44	+1	1056277..1057008	-	243	21910554	rsuA	SpyM3_1018	-	putative 16S pseudouridylate synthase
1019	 42.90	+1	1057123..1057488	+	121	21910555	-	SpyM3_1019	-	hypothetical protein
1020	 42.01	0	1057608..1058828	-	406	21910556	-	SpyM3_1020	-	hypothetical protein
1021	 40.47	0	1059202..1060686	+	494	21910557	-	SpyM3_1021	-	hypothetical protein
1022	 40.80	0	1060791..1061192	-	133	21910558	-	SpyM3_1022	-	hypothetical protein
1023	 43.12	+1	1061277..1061756	-	159	21910559	-	SpyM3_1023	-	putative phosphorylase
1024	 41.79	0	1062097..1063326	-	409	21910560	-	SpyM3_1024	-	TrmA family RNA methyltransferase
1025	 38.02	0	1063534..1064985	-	483	21910561	psr	SpyM3_1025	-	putative transcriptional repressor
1026	 34.15	-1	1065193..1065684	-	163	21910562	aroK	SpyM3_1026	-	shikimate kinase
1027	 41.53	0	1065677..1066969	-	430	21910563	aroA.1	SpyM3_1027	-	3-phosphoshikimate 1-carboxyvinyltransferase
1028	 34.37	-1	1067071..1068036	-	321	21910564	-	SpyM3_1028	-	hypothetical protein
1029	 42.04	0	1068038..1068898	-	286	21910565	map	SpyM3_1029	-	methionine aminopeptidase
1030	 35.28	0	1068913..1070196	-	427	21910566	-	SpyM3_1030	-	hypothetical protein
1031	 33.15	-1	1070205..1070747	-	180	21910567	-	SpyM3_1031	-	putative acetyl transferase
1032	 42.53	+1	1070985..1071974	-	329	21910568	grab	SpyM3_1032	-	protein G-related alpha 2M-bindingprotein
1033	 41.43	0	1072331..1073590	-	419	161485741	murZ	SpyM3_1033	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1034	 42.77	+1	1073764..1074960	-	398	21910570	metK	SpyM3_1034	-	S-adenosylmethionine synthetase
1035	 38.38	0	1075497..1077875	-	792	21910571	inlA	SpyM3_1035	-	putative internalin A precursor
1036	 40.98	0	1078079..1079020	+	313	21910572	birA	SpyM3_1036	-	biotin--protein ligase
1037	 34.39	-1	1078995..1079279	-	94	21910573	-	SpyM3_1037	-	hypothetical protein
1038	 40.75	0	1079283..1080953	-	556	21910574	dnaX	SpyM3_1038	-	DNA polymerase III subunits gamma and tau
1039	 39.72	0	1080953..1081516	-	187	21910575	-	SpyM3_1039	-	hypothetical protein
1040	 34.57	-1	1081595..1082404	+	269	21910576	-	SpyM3_1040	-	hypothetical protein
1041	 31.44	-1	1082457..1082720	-	87	21910577	-	SpyM3_1041	-	hypothetical protein
1042	 37.16	0	1082800..1083426	-	208	21910578	udk	SpyM3_1042	-	uridine kinase
1043	 39.23	0	1083524..1084609	+	361	21910579	deaD.2	SpyM3_1043	-	ATP-dependent RNA helicase
1044	 33.49	-1	1084719..1085993	-	424	21910580	-	SpyM3_1044	-	putative peptidoglycan GlcNAc deacetylase
1045	 41.95	0	1086088..1087491	-	467	21910581	gapN	SpyM3_1045	-	putative NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
1046	 43.19	+1	1087700..1089424	-	574	21910582	ptsI	SpyM3_1046	-	putative phosphoenolpyruvate:sugar phosphotransferase system enzyme I
1047	 40.91	0	1089438..1089701	-	87	21910583	ptsH	SpyM3_1047	-	phosphocarrier protein HPr
1048	 34.52	-1	1090061..1090312	+	83	21910584	nrdH	SpyM3_1048	-	putative glutaredoxin-like protein
1049	 37.96	0	1090332..1092491	+	719	21910585	nrdE.1	SpyM3_1049	-	ribonucleotide-diphosphate reductase subunit alpha
1050	 36.15	0	1092824..1093783	+	319	21910586	nrdF	SpyM3_1050	-	ribonucleotide-diphosphate reductase subunit beta
1051	 41.40	0	1093758..1095071	+	437	21910587	-	SpyM3_1051	-	putative chloride channel protein
1052	 37.76	0	1095209..1095502	+	97	21910588	-	SpyM3_1052	-	putative transposase
1053	 38.05	0	1095535..1095831	+	98	21910589	-	SpyM3_1053	-	putative transposase
1054	 36.85	0	1095934..1096359	+	141	21910590	-	SpyM3_1054	-	putative transposase
1055	 35.78	0	1096456..1097151	-	231	21910591	-	SpyM3_1055	-	hypothetical protein
1056	 36.09	0	1097170..1097931	-	253	21910592	-	SpyM3_1056	-	hypothetical protein
1057	 41.67	0	1097928..1098143	-	71	21910593	-	SpyM3_1057	-	putative transcriptional regulator protein
1058	 42.45	+1	1098502..1100979	-	825	21910594	alaS	SpyM3_1058	-	alanyl-tRNA synthetase
1059	 35.98	0	1101507..1102562	-	351	21910595	prsA	SpyM3_1059	-	foldase protein PrsA
1060	 39.18	0	1102625..1103257	-	210	21910596	-	SpyM3_1060	-	O-methyltransferase
1061	 35.84	0	1103398..1104594	-	398	21910597	-	SpyM3_1061	-	putative oxalate:formate antiporter
1062	 38.93	0	1104970..1106775	-	601	21910598	pepB	SpyM3_1062	-	putative oligopeptidase
1063	 37.38	0	1106788..1107750	-	320	21910599	coiA	SpyM3_1063	-	putative competence protein
1064	 42.79	+1	1108047..1108712	-	221	21910600	-	SpyM3_1064	-	putative 16S pseudouridylate synthetase
1065	 38.87	0	1108882..1109586	-	234	21910601	nagB	SpyM3_1065	-	putative N-acetylglucosamine-6-phosphate isomerase
1066	 42.27	0	1109788..1110816	+	342	21910602	queA	SpyM3_1066	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1067	 38.57	0	1110823..1112043	+	406	21910603	-	SpyM3_1067	-	hypothetical protein
1068	 39.93	0	1112157..1112747	-	196	21910604	-	SpyM3_1068	-	hypothetical protein
1069	 42.57	+1	1112744..1112992	-	82	21910605	-	SpyM3_1069	-	hypothetical protein
1070	 37.72	0	1112977..1113204	-	75	21910606	-	SpyM3_1070	-	hypothetical protein
1071	 39.27	0	1113371..1113976	-	201	21910607	sodM	SpyM3_1071	-	superoxide dismutase
1072	 36.70	0	1114073..1115113	-	346	21910608	holA	SpyM3_1072	-	DNA polymerase III subunit delta
1073	 39.44	0	1115184..1117427	-	747	21910609	comEC	SpyM3_1073	-	putative competence protein
1074	 37.10	0	1117408..1118070	-	220	21910610	comEA	SpyM3_1074	-	putative competence protein
1075	 41.70	0	1118270..1119010	-	246	21910611	-	SpyM3_1075	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1076	 38.60	0	1119050..1119904	+	284	21910612	-	SpyM3_1076	-	hypothetical protein
1077	 36.20	0	1119894..1120172	+	92	21910613	-	SpyM3_1077	-	hypothetical protein
1078	 39.98	0	1120196..1122196	-	666	21910614	kup	SpyM3_1078	-	putative cation/potassium uptake protein
1079	 41.73	0	1122323..1123942	-	539	21910615	deaD.1	SpyM3_1079	-	putative ATP-dependent RNA helicase
1080	 39.87	0	1124249..1125793	-	514	21910616	prfC	SpyM3_1080	-	peptide chain release factor 3
1081	 32.43	-1	1125750..1125971	+	73	21910617	-	SpyM3_1081	-	hypothetical protein
1082	 35.92	0	1126041..1126736	-	231	21910618	-	SpyM3_1082	-	hypothetical protein
1083	 39.69	0	1126840..1128207	-	455	21910619	murF	SpyM3_1083	-	putative D-Ala-D-Ala adding enzyme
1084	 38.61	0	1128406..1129371	-	321	21910620	ddl	SpyM3_1084	-	D-alanyl-alanine synthetase A
1085	 41.04	0	1129553..1130149	-	198	21910621	recR	SpyM3_1085	-	recombination protein RecR
1086	 35.42	0	1130196..1130387	-	63	21910622	-	SpyM3_1086	-	hypothetical protein
1087	 38.08	0	1130948..1131727	-	259	21910623	fdhC	SpyM3_1087	-	putative formate dehydrogenase
1088	 35.73	0	1131851..1132393	-	180	21910624	-	SpyM3_1088	-	hypothetical protein
1089	 34.87	-1	1132554..1133075	-	173	21910625	-	SpyM3_1089	-	putative transcriptional regulator
1090	 41.67	0	1133182..1133877	-	231	21910626	gpmA	SpyM3_1090	-	phosphoglyceromutase
1091	 41.35	0	1134116..1135051	+	311	21910627	pyrD	SpyM3_1091	-	dihydroorotate dehydrogenase 1A
1092	 29.89	-2	1135106..1135279	-	57	21910628	-	SpyM3_1092	-	hypothetical protein
1093	 41.01	0	1135351..1137213	-	620	21910629	cadA	SpyM3_1093	-	putative heavy metal/cadmium-transporting ATPase
1094	 40.98	0	1137743..1137925	-	60	21910630	-	SpyM3_1094	-	hypothetical protein
1095	 34.72	-1	1137992..1138786	-	264	21910631	mf4	SpyM3_1095	-	putative mitogenic factor - phage associated
1096	 44.28	+1	1139031..1140245	-	404	21910632	-	SpyM3_1096	-	putative N-acetylmuramoyl-L-alanine amidase, lysin - phage associated
1097	 37.50	0	1140357..1140812	-	151	21910633	-	SpyM3_1097	-	putative holin protein - phage associated
1098	 41.30	0	1140823..1141437	-	204	21910634	-	SpyM3_1098	-	hypothetical protein
1099	 36.81	0	1141440..1141871	-	143	21910635	-	SpyM3_1099	-	hypothetical protein
1100	 41.02	0	1141880..1143661	-	593	21910636	-	SpyM3_1100	-	hypothetical protein
1101	 39.82	0	1143676..1144785	-	369	21910637	hylP.3	SpyM3_1101	-	hyaluronoglucosaminidase - phage associated
1102	 40.02	0	1144785..1146758	-	657	21910638	pblB	SpyM3_1102	-	putative platelet-binding protein - phage associated
1103	 37.93	0	1146740..1147435	-	231	21910639	-	SpyM3_1103	-	hypothetical protein
1104	 40.10	0	1147432..1149795	-	787	21910640	pblA	SpyM3_1104	-	putative human platelet-binding protein - phage associated
1105	 37.63	0	1149795..1150166	-	123	21910641	-	SpyM3_1105	-	hypothetical protein
1106	 33.33	-1	1150181..1150444	-	87	21910642	-	SpyM3_1106	-	hypothetical protein
1107	 35.87	0	1150455..1151045	-	196	21910643	-	SpyM3_1107	-	putative structural protein - phage associated
38.60	MEAN

3.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.