IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
915	 39.23	0	900570..900959	-	129	182683885	-	SPCG_0915	-	IS1381 transposase protein B
916	 38.31	0	900976..901377	-	133	182683886	-	SPCG_0916	-	IS1381 transposase protein A
917	 44.99	+1	901748..903154	+	468	182683887	gidA	SPCG_0917	-	glucose-inhibited division protein A
918	 43.82	0	903232..903975	+	247	182683888	pyrH	SPCG_0918	-	uridylate kinase
919	 42.65	0	903984..904541	+	185	182683889	frr	SPCG_0919	-	ribosome releasing factor
920	 44.97	+1	904562..905455	+	297	182683890	-	SPCG_0920	-	hypothetical protein
921	 41.67	0	905464..905679	+	71	182683891	-	SPCG_0921	-	hypothetical protein
922	 45.10	+1	905765..906733	+	322	182683892	phoL	SPCG_0922	-	phoH family protein
923	 42.74	0	906736..907203	+	155	182683893	-	SPCG_0923	-	hypothetical protein
924	 38.36	0	907215..907592	+	125	182683894	-	SPCG_0924	-	hypothetical protein
925	 37.33	0	907775..908275	+	166	182683895	-	SPCG_0925	-	acetyltransferase
926	 37.72	0	908278..908505	+	75	182683896	-	SPCG_0926	-	hypothetical protein
927	 45.29	+1	908909..909184	-	91	182683897	-	SPCG_0927	-	alanine dehydrogenase
928	 45.65	+1	909181..910008	-	275	182683898	-	SPCG_0928	-	alanine dehydrogenase
929	 40.53	0	910185..910754	+	189	182683899	-	SPCG_0929	-	acetyltransferase
930	 44.85	+1	910822..911472	+	216	182683900	celA	SPCG_0930	-	competence protein CelA
931	 41.37	0	911456..913696	+	746	182683901	celB	SPCG_0931	-	competence protein CelB
932	 41.80	0	913875..914063	+	62	182683902	-	SPCG_0932	-	hypothetical protein
933	 41.29	0	914096..914623	+	175	182683903	-	SPCG_0933	-	ABC transporter, ATP-binding protein
934	 37.64	0	914679..915863	+	394	182683904	-	SPCG_0934	-	hypothetical protein
935	 39.12	0	916117..916704	+	195	182683905	infC	SPCG_0935	-	translation initiation factor IF-3
936	 41.29	0	916737..916937	+	66	182683906	rpmI	SPCG_0936	-	50S ribosomal protein L35
937	 41.11	0	916989..917348	+	119	182683907	rplT	SPCG_0937	-	50S ribosomal protein L20
938	 40.51	0	917355..917786	+	143	182683908	lguL	SPCG_0938	-	lactoylglutathione lyase
939	 45.19	+1	918036..918836	+	266	182683909	pyrDII	SPCG_0939	-	dihydroorotate dehydrogenase electron transfer subunit
940	 43.50	0	918793..919785	+	330	182683910	pyrD	SPCG_0940	-	dihydroorotate dehydrogenase
941	 38.25	0	919827..921860	+	677	182683911	lytB	SPCG_0941	-	endo-beta-N-acetylglucosaminidase
942	 42.60	0	921921..923603	-	560	182683912	flpA	SPCG_0942	-	adherence and virulence protein A
943	 40.96	0	923681..924178	+	165	182683913	-	SPCG_0943	-	hypothetical protein
944	 40.91	0	924159..924554	+	131	182683914	dgkA	SPCG_0944	-	diacylglycerol kinase
945	 44.33	+1	924571..925470	+	299	182683915	era	SPCG_0945	-	GTP-binding protein Era
946	 44.00	0	925519..926343	+	274	182683916	mutM	SPCG_0946	-	formamidopyrimidine-DNA glycosylase
947	 45.18	+1	926316..926948	+	210	182683917	coaE	SPCG_0947	-	dephospho-CoA kinase
948	 43.25	0	926935..928134	+	399	182683918	pmrA	SPCG_0948	-	multi-drug resistance efflux pump
949	 36.32	0	928323..928556	+	77	182683919	secG	SPCG_0949	-	translocase
950	 42.42	0	928658..931012	+	784	182683920	rnr	SPCG_0950	-	VacB/Rnb family exoribonuclease
951	 44.66	+1	930975..931442	+	155	182683921	smpB	SPCG_0951	-	ssrA-binding protein
952	 42.10	0	931452..932318	+	288	182683922	tehB	SPCG_0952	-	tellurite resistance protein TehB
953	 38.78	0	932391..933344	+	317	182683923	coiA	SPCG_0953	-	competence protein CoiA
954	 41.93	0	933363..935165	+	600	182683924	-	SPCG_0954	-	oligoendopeptidase F
955	 41.04	0	935167..935880	+	237	182683925	-	SPCG_0955	-	O-methyltransferase
956	 36.94	0	935947..936888	+	313	182683926	-	SPCG_0956	-	peptidylprolyl isomerase
957	 36.26	0	937007..937348	-	113	182683927	-	SPCG_0957	-	IS3-Spn1, transposase, truncation
958	 42.35	0	938109..938729	-	206	182683928	gpmB	SPCG_0958	-	phosphoglycerate mutase family protein
959	 39.54	0	938729..939211	-	160	182683929	ebsC	SPCG_0959	-	regulatory protein, putative
960	 41.64	0	939211..940053	-	280	182683930	-	SPCG_0960	-	hypothetical protein
961	 38.58	0	940148..940948	-	266	182683931	-	SPCG_0961	-	hypothetical protein
962	 41.04	0	941032..942471	+	479	182683932	gcaD	SPCG_0962	-	UDP-N-acetylglucosamine pyrophosphorylase
963	 41.39	0	942481..943026	+	181	182683933	-	SPCG_0963	-	mutT/nudix family protein
964	 35.34	0	943005..943352	+	115	182683934	-	SPCG_0964	-	hypothetical protein
965	 43.43	0	943369..944061	+	230	182683935	pfs	SPCG_0965	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
966	 38.41	0	944138..944629	+	163	182683936	-	SPCG_0966	-	hypothetical protein
967	 39.71	0	944691..945317	+	208	182683937	dnaQ	SPCG_0967	-	DNA polymerase III subunit epsilon
968	 35.93	0	945320..947089	+	589	182683938	-	SPCG_0968	-	hypothetical protein
969	 36.21	0	947285..947632	+	115	182683939	-	SPCG_0969	-	IS630-Spn1 transposase
970	 38.30	0	947811..947951	+	46	182683940	-	SPCG_0970	-	hypothetical protein
971	 48.26	+1	948112..948312	+	66	182683941	-	SPCG_0971	-	hypothetical protein
972	 45.34	+1	948131..948763	-	210	182683942	-	SPCG_0972	-	hypothetical protein
973	 36.16	0	948989..949696	+	235	182683943	ccdA	SPCG_0973	-	cytochrome c-type biogenesis protein CcdA
974	 38.02	0	949689..950264	+	191	182683944	-	SPCG_0974	-	thioredoxin family protein
975	 41.10	0	950626..952029	+	467	182683945	yfnA	SPCG_0975	-	amino acid permease family protein
976	 38.57	0	952154..953089	+	311	182683946	lmb	SPCG_0976	-	adhesion lipoprotein
977	 41.80	0	953097..955601	+	834	182683947	-	SPCG_0977	-	hypothetical protein
978	 36.47	0	955811..958930	+	1039	182683948	-	SPCG_0978	-	hypothetical protein
979	 35.46	0	959760..959900	+	46	182683949	-	SPCG_0979	-	hypothetical protein
980	 40.37	0	959934..960416	+	160	182683950	-	SPCG_0980	-	pneumococcal histidine triad protein E precursor, truncation
981	 38.74	0	960525..960746	-	73	182683952	-	SPCG_0981	-	hypothetical protein
982	 38.82	0	960732..960968	+	78	182683951	-	SPCG_0982	-	hypothetical protein
983	 36.34	0	960997..961329	+	110	182683953	-	SPCG_0983	-	hypothetical protein
984	 42.48	0	961365..962588	-	407	182683954	pepT	SPCG_0984	-	peptidase T
985	 37.90	0	962743..963837	+	364	182683955	hemH	SPCG_0985	-	ferrochelatase
986	 33.33	-1	963884..963976	-	30	182683956	-	SPCG_0986	-	hypothetical protein
987	 36.39	0	963992..964744	-	250	182683957	-	SPCG_0987	-	degenerate transposase
988	 38.46	0	964737..965282	-	181	182683958	-	SPCG_0988	-	degenerate transposase
989	 37.30	0	965398..965775	-	125	182683959	mscL	SPCG_0989	-	large conductance mechanosensitive channel protein MscL
990	 31.02	-1	965857..966288	-	143	182683960	-	SPCG_0990	-	gtrA family protein
991	 37.11	0	966339..966920	+	193	182683961	-	SPCG_0991	-	hypothetical protein
992	 40.00	0	967198..967452	+	84	182683962	-	SPCG_0992	-	hypothetical protein
993	 42.34	0	967678..968754	+	358	182683963	asd	SPCG_0993	-	aspartate-semialdehyde dehydrogenase
994	 43.38	0	968810..969745	+	311	182683964	dapA	SPCG_0994	-	dihydrodipicolinate synthase
995	 44.17	0	969792..971231	-	479	182683965	thdF	SPCG_0995	-	tRNA modification GTPase
996	 44.00	0	971302..971526	-	74	182683966	xylH	SPCG_0996	-	4-oxalocrotonate tautomerase
997	 43.99	0	971607..972197	+	196	182683967	tdk	SPCG_0997	-	thymidine kinase
998	 45.19	+1	972194..973273	+	359	182683968	prfA	SPCG_0998	-	peptide chain release factor 1
999	 38.45	0	973273..974112	+	279	182683969	hemK	SPCG_0999	-	hemK protein
1000	 43.33	0	974069..974698	+	209	182683970	-	SPCG_1000	-	Sua5/YciO/YrdC family protein
1001	 40.76	0	974661..975131	+	156	182683971	-	SPCG_1001	-	acetyltransferase
1002	 42.16	0	975193..976449	+	418	182683972	glyA	SPCG_1002	-	serine hydroxymethyltransferase
1003	 37.60	0	976424..977431	+	335	182683973	-	SPCG_1003	-	hypothetical protein
1004	 41.63	0	977431..978045	+	204	182683974	-	SPCG_1004	-	hypothetical protein
1005	 40.10	0	978119..979093	+	324	182683975	-	SPCG_1005	-	hypothetical protein
1006	 37.63	0	979062..979154	+	30	182683976	-	SPCG_1006	-	hypothetical protein
1007	 40.84	0	979167..980792	+	541	182683977	-	SPCG_1007	-	RNA methyltransferase
1008	 22.55	-2	981918..982019	+	33	182683978	-	SPCG_1008	-	hypothetical protein
1009	 30.90	-1	982140..983165	+	341	182683979	-	SPCG_1009	-	iron-compound ABC transporter, iron compound-binding protein
1010	 32.07	-1	983136..983690	-	184	182683981	-	SPCG_1010	-	hypothetical protein
1011	 33.24	-1	983143..984162	+	339	182683980	-	SPCG_1011	-	iron-compound ABC transporter, permease protein
1012	 30.46	-1	984162..985169	+	335	182683982	-	SPCG_1012	-	iron-compound ABC transporter, permease protein
1013	 33.71	-1	985169..985963	+	264	182683983	-	SPCG_1013	-	iron-compound ABC transporter, ATP-binding protein
1014	 23.58	-2	986832..987149	+	105	182683984	-	SPCG_1014	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.