IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
863	 36.22	0	848703..850088	+	461	182683833	-	SPCG_0863	-	v-type ATP synthase subunit B
864	 30.56	-1	850111..850722	+	203	182683834	-	SPCG_0864	-	ATP synthase subunit D
865	 37.12	0	850832..851359	-	175	182683835	-	SPCG_0865	-	degenerate transposase
866	 37.76	0	851640..852158	-	172	182683836	-	SPCG_0866	-	degenerate transposase
867	 23.21	-2	852291..852458	+	55	182683837	-	SPCG_0867	-	hypothetical protein
868	 30.65	-1	852474..852734	+	86	182683838	-	SPCG_0868	-	hypothetical protein
869	 41.83	0	852838..853308	-	156	182683839	-	SPCG_0869	-	transcriptional repressor, putative
870	 41.20	0	853325..855598	-	757	182683840	-	SPCG_0870	-	x-prolyl-dipeptidyl aminopeptidase
871	 39.34	0	855918..859046	+	1042	182683841	-	SPCG_0871	-	DNA polymerase III subunit alpha
872	 44.25	0	859129..860136	+	335	182683842	pfkA	SPCG_0872	-	6-phosphofructokinase
873	 41.10	0	860195..861700	+	501	182683843	-	SPCG_0873	-	pyruvate kinase
874	 37.90	0	862864..863082	-	72	182683844	-	SPCG_0874	-	hypothetical protein
875	 39.40	0	863518..864390	+	290	182683845	-	SPCG_0875	-	hypothetical protein
876	 35.15	0	864403..864567	+	54	182683846	-	SPCG_0876	-	hypothetical protein
877	 39.78	0	864488..864580	+	30	182683847	-	SPCG_0877	-	hypothetical protein
878	 39.06	0	864497..864880	-	127	182683848	-	SPCG_0878	-	IS1381 transposase protein A
879	 34.29	-1	865023..865334	+	103	182683849	-	SPCG_0879	-	hypothetical protein
880	 33.89	-1	865338..866054	+	238	182683850	-	SPCG_0880	-	hypothetical protein
881	 40.69	0	866184..866999	-	271	182683851	-	SPCG_0881	-	hypothetical protein
882	 42.05	0	866996..867901	-	301	182683852	-	SPCG_0882	-	hypothetical protein
883	 35.61	0	867902..868033	-	43	182683853	-	SPCG_0883	-	hypothetical protein
884	 28.73	-2	868243..869610	+	455	182683854	-	SPCG_0884	-	capsular polysaccharide biosynthesis protein, putative
885	 42.78	0	869694..871841	+	715	182683855	-	SPCG_0885	-	transcriptional regulator, putative
886	 44.44	+1	871828..872277	+	149	182683856	-	SPCG_0886	-	hypothetical protein
887	 41.03	0	872335..872607	+	90	182683857	-	SPCG_0887	-	hypothetical protein
888	 33.33	-1	872655..872819	-	54	182683858	-	SPCG_0888	-	hypothetical protein
889	 43.26	0	873523..874338	+	271	182683859	-	SPCG_0889	-	ABC transporter, ATP-binding protein
890	 39.17	0	874340..876328	+	662	182683860	-	SPCG_0890	-	ABC transporter, permease protein, putative
891	 43.82	0	876370..876960	-	196	182683861	-	SPCG_0891	-	uncharacterized membrane protein
892	 39.41	0	877040..877960	-	306	182683862	-	SPCG_0892	-	IS1239 transposase
893	 43.70	0	878622..880097	+	491	182683863	cad	SPCG_0893	-	lysine decarboxylase
894	 35.88	0	880063..880533	-	156	182683864	-	SPCG_0894	-	pilin gene inverting-related protein,truncated
895	 44.60	+1	881034..881894	+	286	182683865	speE	SPCG_0895	-	spermidine synthase
896	 41.59	0	881891..883150	+	419	182683866	-	SPCG_0896	-	hypothetical protein
897	 42.64	0	883150..884277	+	375	182683867	nspC	SPCG_0897	-	carboxynorspermidine decarboxylase
898	 44.29	+1	884274..885359	+	361	182683868	-	SPCG_0898	-	hypothetical protein
899	 43.15	0	885369..886244	+	291	182683869	-	SPCG_0899	-	carbon-nitrogen hydrolase family protein
900	 43.83	0	886425..887234	-	269	182683870	-	SPCG_0900	-	Cof family protein
901	 36.90	0	887781..888452	+	223	182683871	-	SPCG_0901	-	hypothetical protein
902	 40.48	0	888694..889602	+	302	182683872	cpsY	SPCG_0902	-	LysR family transcriptional regulator
903	 41.34	0	889599..890060	+	153	182683873	lspA	SPCG_0903	-	lipoprotein signal peptidase
904	 44.48	+1	890050..890937	+	295	182683874	rluD	SPCG_0904	-	ribosomal large subunit pseudouridine synthase D
905	 37.47	0	890940..892823	+	627	182683875	lytD	SPCG_0905	-	choline binding protein E
906	 44.30	+1	892903..894033	+	376	182683876	proB	SPCG_0906	-	gamma-glutamyl kinase
907	 45.53	+1	894043..895305	+	420	182683877	proA	SPCG_0907	-	gamma-glutamyl phosphate reductase
908	 44.74	+1	895309..896106	+	265	182683878	proC	SPCG_0908	-	pyrroline-5-carboxylate reductase
909	 46.48	+1	896326..896964	+	212	182683879	tmk	SPCG_0909	-	thymidylate kinase
910	 41.19	0	896961..897851	+	296	182683880	holB	SPCG_0910	-	DNA polymerase III subunit delta
911	 41.74	0	897864..898208	+	114	182683881	-	SPCG_0911	-	hypothetical protein
912	 43.45	0	898211..899080	+	289	182683882	-	SPCG_0912	-	tetrapyrrole methylase family protein
913	 32.97	-1	899280..899825	+	181	182683883	-	SPCG_0913	-	hypothetical protein
914	 30.34	-1	900078..900512	+	144	182683884	-	SPCG_0914	-	hypothetical protein
915	 39.23	0	900570..900959	-	129	182683885	-	SPCG_0915	-	IS1381 transposase protein B
916	 38.31	0	900976..901377	-	133	182683886	-	SPCG_0916	-	IS1381 transposase protein A
917	 44.99	+1	901748..903154	+	468	182683887	gidA	SPCG_0917	-	glucose-inhibited division protein A
918	 43.82	0	903232..903975	+	247	182683888	pyrH	SPCG_0918	-	uridylate kinase
919	 42.65	0	903984..904541	+	185	182683889	frr	SPCG_0919	-	ribosome releasing factor
920	 44.97	+1	904562..905455	+	297	182683890	-	SPCG_0920	-	hypothetical protein
921	 41.67	0	905464..905679	+	71	182683891	-	SPCG_0921	-	hypothetical protein
922	 45.10	+1	905765..906733	+	322	182683892	phoL	SPCG_0922	-	phoH family protein
923	 42.74	0	906736..907203	+	155	182683893	-	SPCG_0923	-	hypothetical protein
924	 38.36	0	907215..907592	+	125	182683894	-	SPCG_0924	-	hypothetical protein
925	 37.33	0	907775..908275	+	166	182683895	-	SPCG_0925	-	acetyltransferase
926	 37.72	0	908278..908505	+	75	182683896	-	SPCG_0926	-	hypothetical protein
927	 45.29	+1	908909..909184	-	91	182683897	-	SPCG_0927	-	alanine dehydrogenase
928	 45.65	+1	909181..910008	-	275	182683898	-	SPCG_0928	-	alanine dehydrogenase
929	 40.53	0	910185..910754	+	189	182683899	-	SPCG_0929	-	acetyltransferase
930	 44.85	+1	910822..911472	+	216	182683900	celA	SPCG_0930	-	competence protein CelA
931	 41.37	0	911456..913696	+	746	182683901	celB	SPCG_0931	-	competence protein CelB
932	 41.80	0	913875..914063	+	62	182683902	-	SPCG_0932	-	hypothetical protein
933	 41.29	0	914096..914623	+	175	182683903	-	SPCG_0933	-	ABC transporter, ATP-binding protein
934	 37.64	0	914679..915863	+	394	182683904	-	SPCG_0934	-	hypothetical protein
935	 39.12	0	916117..916704	+	195	182683905	infC	SPCG_0935	-	translation initiation factor IF-3
936	 41.29	0	916737..916937	+	66	182683906	rpmI	SPCG_0936	-	50S ribosomal protein L35
937	 41.11	0	916989..917348	+	119	182683907	rplT	SPCG_0937	-	50S ribosomal protein L20
938	 40.51	0	917355..917786	+	143	182683908	lguL	SPCG_0938	-	lactoylglutathione lyase
939	 45.19	+1	918036..918836	+	266	182683909	pyrDII	SPCG_0939	-	dihydroorotate dehydrogenase electron transfer subunit
940	 43.50	0	918793..919785	+	330	182683910	pyrD	SPCG_0940	-	dihydroorotate dehydrogenase
941	 38.25	0	919827..921860	+	677	182683911	lytB	SPCG_0941	-	endo-beta-N-acetylglucosaminidase
942	 42.60	0	921921..923603	-	560	182683912	flpA	SPCG_0942	-	adherence and virulence protein A
943	 40.96	0	923681..924178	+	165	182683913	-	SPCG_0943	-	hypothetical protein
944	 40.91	0	924159..924554	+	131	182683914	dgkA	SPCG_0944	-	diacylglycerol kinase
945	 44.33	+1	924571..925470	+	299	182683915	era	SPCG_0945	-	GTP-binding protein Era
946	 44.00	0	925519..926343	+	274	182683916	mutM	SPCG_0946	-	formamidopyrimidine-DNA glycosylase
947	 45.18	+1	926316..926948	+	210	182683917	coaE	SPCG_0947	-	dephospho-CoA kinase
948	 43.25	0	926935..928134	+	399	182683918	pmrA	SPCG_0948	-	multi-drug resistance efflux pump
949	 36.32	0	928323..928556	+	77	182683919	secG	SPCG_0949	-	translocase
950	 42.42	0	928658..931012	+	784	182683920	rnr	SPCG_0950	-	VacB/Rnb family exoribonuclease
951	 44.66	+1	930975..931442	+	155	182683921	smpB	SPCG_0951	-	ssrA-binding protein
952	 42.10	0	931452..932318	+	288	182683922	tehB	SPCG_0952	-	tellurite resistance protein TehB
953	 38.78	0	932391..933344	+	317	182683923	coiA	SPCG_0953	-	competence protein CoiA
954	 41.93	0	933363..935165	+	600	182683924	-	SPCG_0954	-	oligoendopeptidase F
955	 41.04	0	935167..935880	+	237	182683925	-	SPCG_0955	-	O-methyltransferase
956	 36.94	0	935947..936888	+	313	182683926	-	SPCG_0956	-	peptidylprolyl isomerase
957	 36.26	0	937007..937348	-	113	182683927	-	SPCG_0957	-	IS3-Spn1, transposase, truncation
958	 42.35	0	938109..938729	-	206	182683928	gpmB	SPCG_0958	-	phosphoglycerate mutase family protein
959	 39.54	0	938729..939211	-	160	182683929	ebsC	SPCG_0959	-	regulatory protein, putative
960	 41.64	0	939211..940053	-	280	182683930	-	SPCG_0960	-	hypothetical protein
961	 38.58	0	940148..940948	-	266	182683931	-	SPCG_0961	-	hypothetical protein
962	 41.04	0	941032..942471	+	479	182683932	gcaD	SPCG_0962	-	UDP-N-acetylglucosamine pyrophosphorylase
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.