IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
699	 41.34	0	694813..695973	+	386	182683669	-	SPCG_0699	-	branched-chain amino acid ABC transporter, amino acid-binding protein
700	 43.00	0	696232..697110	+	292	182683670	-	SPCG_0700	-	branched-chain amino acid ABC transporter, permease protein
701	 40.75	0	697114..698070	+	318	182683671	-	SPCG_0701	-	branched-chain amino acid ABC transporter, permease protein
702	 38.95	0	698070..698834	+	254	182683672	-	SPCG_0702	-	branched-chain amino acid ABC transporter, ATP-binding protein
703	 41.49	0	698834..699544	+	236	182683673	-	SPCG_0703	-	branched-chain amino acid ABC transporter, ATP-binding protein
704	 37.75	0	699958..700614	+	218	182683674	-	SPCG_0704	-	acetoin utilization protein AcuB, putative
705	 42.63	0	700828..701817	+	329	182683675	prfB	SPCG_0705	-	peptide chain release factor 2
706	 41.13	0	701835..702527	+	230	182683676	ftsE	SPCG_0706	-	cell division ABC transporter, ATP-binding protein FtsE
707	 37.17	0	702457..703446	+	329	182683677	ftsX	SPCG_0707	-	cell division ABC transporter, permease protein FtsX
708	 41.27	0	703732..705912	+	726	182683678	ptsG	SPCG_0708	-	PTS system, IIABC components
709	 35.83	0	705918..706037	+	39	182683679	-	SPCG_0709	-	hypothetical protein
710	 41.73	0	706030..706779	+	249	182683680	-	SPCG_0710	-	hypothetical protein
711	 40.62	0	706919..708262	+	447	182683681	rheB	SPCG_0711	-	DEAD-box ATP dependent DNA helicase
712	 43.83	0	708477..709667	+	396	182683682	metK	SPCG_0712	-	S-adenosylmethionine synthetase
713	 42.63	0	710220..711155	+	311	182683683	-	SPCG_0713	-	dihydroorotate dehydrogenase
714	 39.31	0	711189..712226	+	345	182683684	holA	SPCG_0714	-	DNA polymerase III subunit delta
715	 43.40	0	712399..713004	+	201	182683685	sodA	SPCG_0715	-	superoxide dismutase, manganese-dependent
716	 40.11	0	713162..713692	+	176	182683686	-	SPCG_0716	-	hypothetical protein
717	 42.45	0	713713..714798	+	361	182683687	-	SPCG_0717	-	hypothetical protein
718	 37.06	0	714798..715280	+	160	182683688	-	SPCG_0718	-	vanZF-related protein
719	 43.90	0	715282..716823	+	513	182683689	-	SPCG_0719	-	ABC transporter, ATP-binding protein
720	 43.41	0	716879..717682	-	267	182683690	ppiA	SPCG_0720	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
721	 35.68	0	717766..717978	-	70	182683691	-	SPCG_0721	-	hypothetical protein
722	 37.62	0	718457..718666	-	69	182683692	-	SPCG_0722	-	hypothetical protein
723	 39.93	0	718836..719123	+	95	182683693	rpsP	SPCG_0723	-	30S ribosomal protein S16
724	 36.25	0	719127..719366	+	79	182683694	-	SPCG_0724	-	KH domain-containing protein
725	 34.46	-1	719931..720731	+	266	182683695	-	SPCG_0725	-	hypothetical protein
726	 40.27	0	720762..721280	+	172	182683696	rimM	SPCG_0726	-	16S rRNA-processing protein
727	 42.92	0	721270..721989	+	239	182683697	trmD	SPCG_0727	-	tRNA (guanine-N(1)-)-methyltransferase
728	 37.76	0	722001..722339	+	112	182683698	-	SPCG_0728	-	ATP cone domain-containing protein
729	 38.01	0	722370..722690	-	106	182683699	-	SPCG_0729	-	hypothetical protein
730	 38.33	0	722764..723003	+	79	182683700	-	SPCG_0730	-	hypothetical protein
731	 42.64	0	723000..723128	-	42	182683701	-	SPCG_0731	-	hypothetical protein
732	 44.69	+1	723255..723791	-	178	182683702	-	SPCG_0732	-	hypothetical protein
733	 43.25	0	723964..725334	-	456	182683703	gor	SPCG_0733	-	glutathione reductase
734	 42.33	0	725620..726819	+	399	182683704	-	SPCG_0734	-	hypothetical protein
735	 41.74	0	726803..727504	+	233	182683705	-	SPCG_0735	-	ABC transporter, ATP-binding protein
736	 40.00	0	727506..728765	+	419	182683706	-	SPCG_0736	-	hypothetical protein
737	 42.65	0	728847..730886	+	679	182683707	metG	SPCG_0737	-	methionine--tRNA ligase
738	 40.43	0	731259..731582	+	107	182683708	-	SPCG_0738	-	hypothetical protein
739	 37.62	0	731586..732401	+	271	182683709	-	SPCG_0739	-	hypothetical protein
740	 36.67	0	732473..733402	+	309	182683710	-	SPCG_0740	-	aldo/keto reductase family oxidoreductase
741	 41.95	0	733468..733734	+	88	182683711	-	SPCG_0741	-	hypothetical protein
742	 44.92	+1	733727..734425	+	232	182683712	fabG	SPCG_0742	-	3-ketoacyl-(acyl-carrier-protein) reductase
743	 39.72	0	734436..734936	+	166	182683713	-	SPCG_0743	-	mutT/nudix family protein
744	 36.43	0	734911..735783	+	290	182683714	-	SPCG_0744	-	PEP-utilizing enzyme family protein
745	 42.63	0	735758..736198	+	146	182683715	-	SPCG_0745	-	hypothetical protein
746	 44.37	+1	736321..738867	+	848	182683716	pepN	SPCG_0746	-	aminopeptidase N
747	 37.11	0	738910..739650	+	246	182683717	ciaR	SPCG_0747	-	DNA-binding response regulator CiaR
748	 38.43	0	739640..740974	+	444	182683718	ciaH	SPCG_0748	-	sensor histidine kinase CiaH
749	 34.03	-1	741008..741295	-	95	182683720	-	SPCG_0749	-	hypothetical protein
750	 40.43	0	741294..742364	+	356	182683719	-	SPCG_0750	-	hypothetical protein
751	 40.07	0	742564..745014	+	816	182683721	dinG	SPCG_0751	-	ATP-dependent DNA helicase
752	 39.89	0	745024..746274	+	416	182683722	rodA	SPCG_0752	-	rod shape-determining protein RodA, putative
753	 43.60	0	746285..746839	+	184	182683723	thiJ	SPCG_0753	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
754	 37.52	0	746915..747487	+	190	182683724	gph	SPCG_0754	-	HAD superfamily hydrolase
755	 42.84	0	747502..749448	+	648	182683725	gyrB	SPCG_0755	-	DNA gyrase subunit B
756	 36.13	0	749503..751257	+	584	182683726	ezrA	SPCG_0756	-	septation ring formation regulator EzrA
757	 30.21	-1	751788..751883	+	31	182683727	-	SPCG_0757	-	hypothetical protein
758	 41.67	0	751981..752196	-	71	182683728	-	SPCG_0758	-	IS66 family Orf2
759	 37.33	0	752564..752863	-	99	182683729	-	SPCG_0759	-	hypothetical protein
760	 39.78	0	753028..753492	-	154	182683730	-	SPCG_0760	-	mutT/nudix family protein
761	 35.73	0	753542..753958	+	138	182683731	-	SPCG_0761	-	IS630-Spn1, transposase Orf1
762	 43.43	0	754612..756870	-	752	182683732	clpE	SPCG_0762	-	ATP-dependent Clp protease, ATP-binding subunit ClpE
763	 41.13	0	757099..757329	-	76	182683733	-	SPCG_0763	-	hypothetical protein
764	 39.42	0	757513..758202	+	229	182683734	-	SPCG_0764	-	amino acid ABC transporter, permease protein
765	 43.27	0	758202..758936	+	244	182683735	-	SPCG_0765	-	amino acid ABC transporter, ATP-binding protein
766	 45.17	+1	759027..759947	+	306	182683736	-	SPCG_0766	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
767	 33.58	-1	760085..760906	+	273	182683737	-	SPCG_0767	-	hypothetical protein
768	 43.87	0	760921..761793	+	290	182683738	-	SPCG_0768	-	hypothetical protein
769	 30.95	-1	761790..761915	-	41	182683739	-	SPCG_0769	-	hypothetical protein
770	 43.05	0	762018..762758	+	246	182683740	rpiA	SPCG_0770	-	ribose-5-phosphate isomerase A
771	 42.27	0	762709..763983	+	424	182683741	deoB	SPCG_0771	-	phosphopentomutase
772	 41.38	0	763985..764158	+	57	182683742	-	SPCG_0772	-	hypothetical protein
773	 36.67	0	764273..764542	+	89	182683743	-	SPCG_0773	-	hypothetical protein
774	 44.69	+1	764542..765351	+	269	182683744	pnp	SPCG_0774	-	purine nucleoside phosphorylase
775	 40.20	0	765815..766222	+	135	182683745	-	SPCG_0775	-	hypothetical protein
776	 37.67	0	766232..766807	+	191	182683746	-	SPCG_0776	-	hypothetical protein
777	 41.72	0	766832..767344	+	170	182683747	-	SPCG_0777	-	hemolysin-related protein
778	 42.05	0	768002..768712	+	236	182683748	deoD	SPCG_0778	-	purine nucleoside phosphorylase
779	 38.67	0	768735..769259	-	174	182683749	flaR	SPCG_0779	-	topology modulation protein
780	 38.49	0	769312..769563	-	83	182683750	rpsT	SPCG_0780	-	30S ribosomal protein S20
781	 38.38	0	769616..770566	-	316	182683751	coaA	SPCG_0781	-	pantothenate kinase
782	 32.84	-1	770726..771130	+	134	182683752	-	SPCG_0782	-	hypothetical protein
783	 39.76	0	771337..771927	+	196	182683753	-	SPCG_0783	-	hypothetical protein
784	 43.11	0	771924..773201	+	425	182683754	pdp	SPCG_0784	-	pyrimidine-nucleoside phosphorylase
785	 42.23	0	773219..773881	+	220	182683755	deoC	SPCG_0785	-	deoxyribose-phosphate aldolase
786	 40.77	0	773868..774257	+	129	182683756	cdd	SPCG_0786	-	cytidine deaminase
787	 42.31	0	774275..775399	+	374	182683757	-	SPCG_0787	-	lipoprotein
788	 41.86	0	775543..777078	+	511	182683758	-	SPCG_0788	-	sugar ABC transporter, ATP-binding protein
789	 44.75	+1	777044..778129	+	361	182683759	-	SPCG_0789	-	sugar ABC transporter, permease protein, putative
790	 42.74	0	778132..779088	+	318	182683760	-	SPCG_0790	-	sugar ABC transporter, permease protein, putative
791	 27.70	-2	779173..779385	+	70	182683761	-	SPCG_0791	-	degenerate transposase
792	 39.29	0	779521..779688	+	55	182683762	-	SPCG_0792	-	hypothetical protein
793	 33.70	-1	779688..779960	+	90	182683763	-	SPCG_0793	-	degenerate transposase
794	 38.65	0	780022..780510	+	162	182683764	-	SPCG_0794	-	degenerate transposase
795	 41.12	0	780553..781194	-	213	182683765	-	SPCG_0795	-	hypothetical protein
796	 45.22	+1	781330..783273	+	647	182683766	parE	SPCG_0796	-	DNA topoisomerase IV subunit B
797	 27.78	-2	783273..783380	+	35	182683767	-	SPCG_0797	-	hypothetical protein
798	 35.71	0	783394..783519	+	41	182683768	-	SPCG_0798	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.