IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
654	 44.08	0	658051..658683	+	210	182683624	pyrE	SPCG_0654	-	orotate phosphoribosyltransferase
655	 34.51	-1	659362..660126	+	254	182683625	-	SPCG_0655	-	hypothetical protein
656	 31.35	-1	660881..661585	+	234	182683626	-	SPCG_0656	-	hypothetical protein
657	 31.64	-1	661582..662229	+	215	182683627	-	SPCG_0657	-	ABC transporter, ATP-binding protein
658	 41.23	0	662309..663169	-	286	182683628	-	SPCG_0658	-	amino acid (glutamine) ABC transporter substrate binding protein
659	 43.08	0	663181..663939	-	252	182683629	-	SPCG_0659	-	amino acid ABC transporter, ATP-binding protein
660	 42.48	0	663940..664857	-	305	182683630	-	SPCG_0660	-	amino acid ABC transporter, permease protein
661	 40.82	0	664890..665036	+	48	182683631	-	SPCG_0661	-	hypothetical protein
662	 43.13	0	665164..666654	+	496	182683632	lysS	SPCG_0662	-	lysyl-tRNA synthetase
663	 45.47	+1	667278..668414	+	378	182683633	lctO	SPCG_0663	-	lactate oxidase
664	 40.36	0	668971..669639	+	222	182683634	-	SPCG_0664	-	transcriptional regulator, putative
665	 39.02	0	669636..669881	-	81	182683635	-	SPCG_0665	-	hypothetical protein
666	 36.57	0	669944..670747	+	267	182683636	thiM	SPCG_0666	-	hydroxyethylthiazole kinase
667	 34.13	-1	670749..671378	+	209	182683637	thiE	SPCG_0667	-	thiamine-phosphate pyrophosphorylase
668	 41.00	0	671937..672497	+	186	182683638	-	SPCG_0668	-	hypothetical protein
669	 44.01	0	672498..673883	+	461	182683639	-	SPCG_0669	-	ABC transporter, ATP-binding protein
670	 39.78	0	673885..674535	+	216	182683640	-	SPCG_0670	-	hypothetical protein
671	 38.82	0	674546..675238	+	230	182683641	tenA	SPCG_0671	-	transcriptional activator TenA
672	 40.95	0	675243..675767	+	174	182683642	-	SPCG_0672	-	hypothetical protein
673	 43.74	0	675764..676570	+	268	182683643	thiM	SPCG_0673	-	hydroxyethylthiazole kinase, putative
674	 43.44	0	676563..677195	+	210	182683644	thiE	SPCG_0674	-	thiamine-phosphate pyrophosphorylase
675	 43.31	0	677405..678196	-	263	182683645	thiD	SPCG_0675	-	phosphomethylpyrimidine kinase
676	 40.85	0	678532..678957	+	141	182683646	copY	SPCG_0676	-	transcriptional repressor, putative
677	 41.67	0	678968..679339	+	123	182683647	-	SPCG_0677	-	hypothetical protein
678	 43.68	0	679340..681592	+	750	182683648	ctpA	SPCG_0678	-	cation transporter E1-E2 family ATPase
679	 43.02	0	681799..683574	+	591	182683649	spxB	SPCG_0679	-	pyruvate oxidase
680	 37.93	0	683685..684032	+	115	182683650	-	SPCG_0680	-	hypothetical protein
681	 38.85	0	684244..684660	-	138	182683651	-	SPCG_0681	-	hypothetical protein
682	 41.20	0	684689..684955	-	88	182683652	-	SPCG_0682	-	hypothetical protein
683	 30.21	-1	685292..685387	-	31	182683653	-	SPCG_0683	-	hypothetical protein
684	 43.26	0	685452..685733	+	93	182683654	-	SPCG_0684	-	6-phospho-beta-glucosidase, truncation
685	 43.24	0	685811..686809	+	332	182683655	-	SPCG_0685	-	mannose-6-phosphate isomerase
686	 40.69	0	686793..686996	+	67	182683656	-	SPCG_0686	-	hypothetical protein
687	 43.73	0	686830..688089	-	419	182683657	-	SPCG_0687	-	sodium-dependent transporter
688	 37.72	0	688086..688313	-	75	182683658	-	SPCG_0688	-	hypothetical protein
689	 42.65	0	688412..689152	+	246	182683659	-	SPCG_0689	-	MerR family transcriptional regulator
690	 41.23	0	689181..689636	-	151	182683660	-	SPCG_0690	-	mutT/nudix family protein
691	 42.71	0	689656..690849	-	397	182683661	-	SPCG_0691	-	hypothetical protein
692	 42.67	0	690890..691735	-	281	182683662	-	SPCG_0692	-	hypothetical protein
693	 39.25	0	691860..692417	+	185	182683663	-	SPCG_0693	-	TetR family transcriptional regulator
694	 44.87	+1	692436..692903	+	155	182683664	-	SPCG_0694	-	cytidine and deoxycytidylate deaminase family protein
695	 41.47	0	692971..693621	+	216	182683665	-	SPCG_0695	-	uracil phosphoribosyltransferase
696	 41.62	0	693794..694384	+	196	182683666	-	SPCG_0696	-	ATP-dependent Clp protease proteolytic subunit
697	 33.33	-1	694381..694479	-	32	182683668	-	SPCG_0697	-	hypothetical protein
698	 36.55	0	694463..694711	+	82	182683667	-	SPCG_0698	-	hypothetical protein
699	 41.34	0	694813..695973	+	386	182683669	-	SPCG_0699	-	branched-chain amino acid ABC transporter, amino acid-binding protein
700	 43.00	0	696232..697110	+	292	182683670	-	SPCG_0700	-	branched-chain amino acid ABC transporter, permease protein
701	 40.75	0	697114..698070	+	318	182683671	-	SPCG_0701	-	branched-chain amino acid ABC transporter, permease protein
702	 38.95	0	698070..698834	+	254	182683672	-	SPCG_0702	-	branched-chain amino acid ABC transporter, ATP-binding protein
703	 41.49	0	698834..699544	+	236	182683673	-	SPCG_0703	-	branched-chain amino acid ABC transporter, ATP-binding protein
704	 37.75	0	699958..700614	+	218	182683674	-	SPCG_0704	-	acetoin utilization protein AcuB, putative
705	 42.63	0	700828..701817	+	329	182683675	prfB	SPCG_0705	-	peptide chain release factor 2
706	 41.13	0	701835..702527	+	230	182683676	ftsE	SPCG_0706	-	cell division ABC transporter, ATP-binding protein FtsE
707	 37.17	0	702457..703446	+	329	182683677	ftsX	SPCG_0707	-	cell division ABC transporter, permease protein FtsX
708	 41.27	0	703732..705912	+	726	182683678	ptsG	SPCG_0708	-	PTS system, IIABC components
709	 35.83	0	705918..706037	+	39	182683679	-	SPCG_0709	-	hypothetical protein
710	 41.73	0	706030..706779	+	249	182683680	-	SPCG_0710	-	hypothetical protein
711	 40.62	0	706919..708262	+	447	182683681	rheB	SPCG_0711	-	DEAD-box ATP dependent DNA helicase
712	 43.83	0	708477..709667	+	396	182683682	metK	SPCG_0712	-	S-adenosylmethionine synthetase
713	 42.63	0	710220..711155	+	311	182683683	-	SPCG_0713	-	dihydroorotate dehydrogenase
714	 39.31	0	711189..712226	+	345	182683684	holA	SPCG_0714	-	DNA polymerase III subunit delta
715	 43.40	0	712399..713004	+	201	182683685	sodA	SPCG_0715	-	superoxide dismutase, manganese-dependent
716	 40.11	0	713162..713692	+	176	182683686	-	SPCG_0716	-	hypothetical protein
717	 42.45	0	713713..714798	+	361	182683687	-	SPCG_0717	-	hypothetical protein
718	 37.06	0	714798..715280	+	160	182683688	-	SPCG_0718	-	vanZF-related protein
719	 43.90	0	715282..716823	+	513	182683689	-	SPCG_0719	-	ABC transporter, ATP-binding protein
720	 43.41	0	716879..717682	-	267	182683690	ppiA	SPCG_0720	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
721	 35.68	0	717766..717978	-	70	182683691	-	SPCG_0721	-	hypothetical protein
722	 37.62	0	718457..718666	-	69	182683692	-	SPCG_0722	-	hypothetical protein
723	 39.93	0	718836..719123	+	95	182683693	rpsP	SPCG_0723	-	30S ribosomal protein S16
724	 36.25	0	719127..719366	+	79	182683694	-	SPCG_0724	-	KH domain-containing protein
725	 34.46	-1	719931..720731	+	266	182683695	-	SPCG_0725	-	hypothetical protein
726	 40.27	0	720762..721280	+	172	182683696	rimM	SPCG_0726	-	16S rRNA-processing protein
727	 42.92	0	721270..721989	+	239	182683697	trmD	SPCG_0727	-	tRNA (guanine-N(1)-)-methyltransferase
728	 37.76	0	722001..722339	+	112	182683698	-	SPCG_0728	-	ATP cone domain-containing protein
729	 38.01	0	722370..722690	-	106	182683699	-	SPCG_0729	-	hypothetical protein
730	 38.33	0	722764..723003	+	79	182683700	-	SPCG_0730	-	hypothetical protein
731	 42.64	0	723000..723128	-	42	182683701	-	SPCG_0731	-	hypothetical protein
732	 44.69	+1	723255..723791	-	178	182683702	-	SPCG_0732	-	hypothetical protein
733	 43.25	0	723964..725334	-	456	182683703	gor	SPCG_0733	-	glutathione reductase
734	 42.33	0	725620..726819	+	399	182683704	-	SPCG_0734	-	hypothetical protein
735	 41.74	0	726803..727504	+	233	182683705	-	SPCG_0735	-	ABC transporter, ATP-binding protein
736	 40.00	0	727506..728765	+	419	182683706	-	SPCG_0736	-	hypothetical protein
737	 42.65	0	728847..730886	+	679	182683707	metG	SPCG_0737	-	methionine--tRNA ligase
738	 40.43	0	731259..731582	+	107	182683708	-	SPCG_0738	-	hypothetical protein
739	 37.62	0	731586..732401	+	271	182683709	-	SPCG_0739	-	hypothetical protein
740	 36.67	0	732473..733402	+	309	182683710	-	SPCG_0740	-	aldo/keto reductase family oxidoreductase
741	 41.95	0	733468..733734	+	88	182683711	-	SPCG_0741	-	hypothetical protein
742	 44.92	+1	733727..734425	+	232	182683712	fabG	SPCG_0742	-	3-ketoacyl-(acyl-carrier-protein) reductase
743	 39.72	0	734436..734936	+	166	182683713	-	SPCG_0743	-	mutT/nudix family protein
744	 36.43	0	734911..735783	+	290	182683714	-	SPCG_0744	-	PEP-utilizing enzyme family protein
745	 42.63	0	735758..736198	+	146	182683715	-	SPCG_0745	-	hypothetical protein
746	 44.37	+1	736321..738867	+	848	182683716	pepN	SPCG_0746	-	aminopeptidase N
747	 37.11	0	738910..739650	+	246	182683717	ciaR	SPCG_0747	-	DNA-binding response regulator CiaR
748	 38.43	0	739640..740974	+	444	182683718	ciaH	SPCG_0748	-	sensor histidine kinase CiaH
749	 34.03	-1	741008..741295	-	95	182683720	-	SPCG_0749	-	hypothetical protein
750	 40.43	0	741294..742364	+	356	182683719	-	SPCG_0750	-	hypothetical protein
751	 40.07	0	742564..745014	+	816	182683721	dinG	SPCG_0751	-	ATP-dependent DNA helicase
752	 39.89	0	745024..746274	+	416	182683722	rodA	SPCG_0752	-	rod shape-determining protein RodA, putative
753	 43.60	0	746285..746839	+	184	182683723	thiJ	SPCG_0753	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.