IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
572	 43.45	0	567629..569863	+	744	182683542	recJ	SPCG_0572	-	single-stranded-DNA-specific exonuclease RecJ
573	 43.20	0	570038..571699	+	553	182683543	-	SPCG_0573	-	metallo-beta-lactamase superfamily protein
574	 42.95	0	571768..572547	+	259	182683544	estA	SPCG_0574	-	tributyrin esterase
575	 37.02	0	572660..573880	+	406	182683545	murM	SPCG_0575	-	beta-lactam resistance factor
576	 35.28	0	573885..575117	+	410	182683546	murN	SPCG_0576	-	beta-lactam resistance factor
577	 45.78	+1	575175..575897	+	240	182683547	-	SPCG_0577	-	hypothetical protein
578	 45.18	+1	575937..577784	+	615	182683548	uvrC	SPCG_0578	-	excinuclease ABC subunit C
579	 44.75	+1	577834..578271	+	145	182683549	-	SPCG_0579	-	hypothetical protein
580	 38.69	0	578272..578607	+	111	182683550	-	SPCG_0580	-	hypothetical protein
581	 41.30	0	578791..579606	-	271	182683551	-	SPCG_0581	-	amino acid ABC transporter, amino acid-binding protein, putative
582	 30.63	-1	579665..579775	+	36	182683552	-	SPCG_0582	-	hypothetical protein
583	 41.75	0	579762..580367	+	201	182683553	nrd	SPCG_0583	-	nitroreductase family protein
584	 45.11	+1	580380..581780	+	466	182683554	pepV	SPCG_0584	-	dipeptidase
585	 44.21	0	581834..582412	+	192	182683555	-	SPCG_0585	-	hypothetical protein
586	 38.10	0	582536..582724	+	62	182683556	-	SPCG_0586	-	hypothetical protein
587	 42.36	0	583015..584355	+	446	182683557	brnQ	SPCG_0587	-	branched-chain amino acid transport system II carrier protein
588	 45.38	+1	584559..585596	+	345	182683558	-	SPCG_0588	-	hypothetical protein
589	 42.06	0	585565..586068	+	167	182683559	-	SPCG_0589	-	HIT family protein
590	 43.24	0	586071..586787	+	238	182683560	-	SPCG_0590	-	hypothetical protein
591	 41.31	0	587096..587521	+	141	182683561	rplK	SPCG_0591	-	50S ribosomal protein L11
592	 40.58	0	587729..588418	+	229	182683562	rplA	SPCG_0592	-	50S ribosomal protein L1
593	 33.92	-1	589020..589532	+	170	182683563	-	SPCG_0593	-	hypothetical protein
594	 43.20	0	590577..591569	+	330	182683564	-	SPCG_0594	-	ABC transporter, ATP-binding protein
595	 41.70	0	591529..592389	+	286	182683565	-	SPCG_0595	-	membrane protein
596	 39.31	0	592391..593176	+	261	182683566	-	SPCG_0596	-	hypothetical protein
597	 42.01	0	593274..593492	+	72	182683567	-	SPCG_0597	-	hypothetical protein
598	 36.67	0	593429..593638	+	69	182683568	-	SPCG_0598	-	hypothetical protein
599	 33.35	-1	594362..600796	+	2144	182683569	prtA	SPCG_0599	-	serine protease
600	 35.74	0	601407..601904	+	165	182683570	-	SPCG_0600	-	PTS system IIA component, putative
601	 40.52	0	601942..602247	+	101	182683571	-	SPCG_0601	-	PTS system, IIB component, putative
602	 41.33	0	602295..603770	+	491	182683572	-	SPCG_0602	-	PTS system, IIC component, putative
603	 42.08	0	604120..610821	+	2233	182683573	bgaA	SPCG_0603	-	beta-galactosidase
604	 40.18	0	611131..611685	-	184	182683574	-	SPCG_0604	-	degenerate transposase
605	 36.99	0	611673..611918	-	81	182683575	-	SPCG_0605	-	degenerate transposase
606	 35.20	0	612129..612449	-	106	182683577	-	SPCG_0606	-	hypothetical protein
607	 38.89	0	612424..613089	+	221	182683576	-	SPCG_0607	-	hypothetical protein
608	 42.51	0	613090..613536	+	148	182683578	-	SPCG_0608	-	Fe-S oxidoreductase
609	 43.44	0	613514..614077	+	187	182683579	-	SPCG_0609	-	hypothetical protein
610	 38.67	0	614101..614325	+	74	182683580	-	SPCG_0610	-	hypothetical protein
611	 35.29	0	614300..614401	+	33	182683581	-	SPCG_0611	-	hypothetical protein
612	 41.77	0	614376..616391	+	671	182683582	-	SPCG_0612	-	sodium/hydrogen exchanger family protein
613	 39.27	0	616555..617430	+	291	182683583	-	SPCG_0613	-	ribonuclease BN, putative
614	 41.77	0	617641..618351	+	236	182683584	ccdA	SPCG_0614	-	cytochrome c-type biogenesis protein CcdA
615	 42.09	0	618344..618937	+	197	182683585	-	SPCG_0615	-	thioredoxin family protein
616	 42.14	0	618948..620060	+	370	182683586	msrA	SPCG_0616	-	bifunctional methionine sulfoxide reductase A/B protein
617	 40.87	0	620400..621155	+	251	182683587	-	SPCG_0617	-	DNA-binding response regulator
618	 43.50	0	621152..622843	+	563	182683588	-	SPCG_0618	-	sensor histidine kinase, putative
619	 45.98	+1	622938..623522	+	194	182683589	-	SPCG_0619	-	hypothetical protein
620	 36.56	0	623544..629486	+	1980	182683590	zmpB	SPCG_0620	-	zinc metalloprotease ZmpB, putative
621	 45.06	+1	629547..631268	+	573	182683591	-	SPCG_0621	-	chorismate binding enzyme
622	 39.57	0	631269..631877	+	202	182683592	-	SPCG_0622	-	hypothetical protein
623	 37.94	0	631936..632934	+	332	182683593	-	SPCG_0623	-	pneumococcal surface protein, putative
624	 43.46	0	633043..634020	+	325	182683594	glcK	SPCG_0624	-	glucokinase
625	 43.45	0	634117..634956	+	279	182683595	thyA	SPCG_0625	-	thymidylate synthase
626	 45.03	+1	635004..635174	-	56	182683597	-	SPCG_0626	-	hypothetical protein
627	 43.92	0	635050..635238	+	62	182683596	-	SPCG_0627	-	hypothetical protein
628	 44.34	+1	635244..636179	+	311	182683598	miaA	SPCG_0628	-	tRNA delta(2)-isopentenylpyrophosphate transferase
629	 44.96	+1	636172..637410	+	412	182683599	-	SPCG_0629	-	GTP-binding protein HflX
630	 40.71	0	637403..638026	+	207	182683600	-	SPCG_0630	-	hypothetical protein
631	 45.38	+1	638041..638970	+	309	182683601	-	SPCG_0631	-	ribonuclease Z
632	 42.20	0	638991..639746	+	251	182683602	-	SPCG_0632	-	short chain dehydrogenase/reductase family oxidoreductase
633	 43.74	0	639800..640798	-	332	182683604	-	SPCG_0633	-	transcriptional regulator, putative
634	 34.81	-1	640772..641041	+	89	182683603	-	SPCG_0634	-	hypothetical protein
635	 41.73	0	641041..641421	+	126	182683605	-	SPCG_0635	-	hypothetical protein
636	 32.83	-1	641540..641737	+	65	182683606	-	SPCG_0636	-	hypothetical protein
637	 43.39	0	641777..642502	-	241	182683607	rsuA	SPCG_0637	-	ribosomal small subunit pseudouridine synthase A
638	 43.48	0	642643..644505	+	620	182683608	-	SPCG_0638	-	elongation factor Tu family protein
639	 34.51	-1	644525..644779	+	84	182683609	-	SPCG_0639	-	hypothetical protein
640	 41.88	0	645326..645442	+	38	182683610	-	SPCG_0640	-	hypothetical protein
641	 37.69	0	645513..647534	+	673	182683611	-	SPCG_0641	-	hypothetical protein
642	 37.07	0	647536..648177	+	213	182683612	-	SPCG_0642	-	ABC transporter, ATP-binding protein
643	 44.72	+1	648281..649633	+	450	182683613	murD	SPCG_0643	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
644	 42.40	0	649635..650693	+	352	182683614	murG	SPCG_0644	-	N-acetylglucosaminyl transferase
645	 40.08	0	650703..651902	+	399	182683615	divIB	SPCG_0645	-	cell division protein DivIB
646	 36.73	0	652012..652158	+	48	182683616	-	SPCG_0646	-	hypothetical protein
647	 36.36	0	652170..652301	+	43	182683617	-	SPCG_0647	-	hypothetical protein
648	 25.21	-2	652642..653490	+	282	182683618	-	SPCG_0648	-	hypothetical protein
649	 30.77	-1	653820..654560	+	246	182683619	-	SPCG_0649	-	HesA/MoeB/ThiF family protein
650	 32.65	-1	655000..655875	+	291	182683620	-	SPCG_0650	-	ABC transporter ATP-binding protein - unknown substrate
651	 32.21	-1	655868..656581	+	237	182683621	-	SPCG_0651	-	hypothetical protein
652	 38.19	0	656855..656998	-	47	182683622	-	SPCG_0652	-	hypothetical protein
653	 45.87	+1	657316..658017	+	233	182683623	pyrF	SPCG_0653	-	orotidine 5'-phosphate decarboxylase
654	 44.08	0	658051..658683	+	210	182683624	pyrE	SPCG_0654	-	orotate phosphoribosyltransferase
655	 34.51	-1	659362..660126	+	254	182683625	-	SPCG_0655	-	hypothetical protein
656	 31.35	-1	660881..661585	+	234	182683626	-	SPCG_0656	-	hypothetical protein
657	 31.64	-1	661582..662229	+	215	182683627	-	SPCG_0657	-	ABC transporter, ATP-binding protein
658	 41.23	0	662309..663169	-	286	182683628	-	SPCG_0658	-	amino acid (glutamine) ABC transporter substrate binding protein
659	 43.08	0	663181..663939	-	252	182683629	-	SPCG_0659	-	amino acid ABC transporter, ATP-binding protein
660	 42.48	0	663940..664857	-	305	182683630	-	SPCG_0660	-	amino acid ABC transporter, permease protein
661	 40.82	0	664890..665036	+	48	182683631	-	SPCG_0661	-	hypothetical protein
662	 43.13	0	665164..666654	+	496	182683632	lysS	SPCG_0662	-	lysyl-tRNA synthetase
663	 45.47	+1	667278..668414	+	378	182683633	lctO	SPCG_0663	-	lactate oxidase
664	 40.36	0	668971..669639	+	222	182683634	-	SPCG_0664	-	transcriptional regulator, putative
665	 39.02	0	669636..669881	-	81	182683635	-	SPCG_0665	-	hypothetical protein
666	 36.57	0	669944..670747	+	267	182683636	thiM	SPCG_0666	-	hydroxyethylthiazole kinase
667	 34.13	-1	670749..671378	+	209	182683637	thiE	SPCG_0667	-	thiamine-phosphate pyrophosphorylase
668	 41.00	0	671937..672497	+	186	182683638	-	SPCG_0668	-	hypothetical protein
669	 44.01	0	672498..673883	+	461	182683639	-	SPCG_0669	-	ABC transporter, ATP-binding protein
670	 39.78	0	673885..674535	+	216	182683640	-	SPCG_0670	-	hypothetical protein
671	 38.82	0	674546..675238	+	230	182683641	tenA	SPCG_0671	-	transcriptional activator TenA
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.