IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
409	 42.21	0	405048..405959	+	303	182683379	shetA	SPCG_0409	-	exfoliative toxin, putative
410	 44.44	+1	405984..407342	-	452	182683380	serS	SPCG_0410	-	seryl-tRNA synthetase
411	 41.94	0	407472..407843	-	123	182683381	-	SPCG_0411	-	hypothetical protein
412	 42.49	0	407846..409210	-	454	182683382	lysC	SPCG_0412	-	aspartate kinase
413	 43.97	0	409579..410349	+	256	182683383	phaB	SPCG_0413	-	enoyl-CoA hydratase
414	 39.54	0	410459..410893	+	144	182683384	-	SPCG_0414	-	MarR family transcriptional regulator
415	 43.08	0	410893..411867	+	324	182683385	fabH	SPCG_0415	-	3-oxoacyl-(acyl carrier protein) synthase
416	 35.56	0	411927..412151	+	74	182683386	acp	SPCG_0416	-	acyl carrier protein
417	 44.21	0	412270..413244	+	324	182683387	fabK	SPCG_0417	-	enoyl-(acyl-carrier-protein) reductase
418	 45.82	+1	413237..414157	+	306	182683388	fabD	SPCG_0418	-	acyl-carrier-protein S-malonyltransferase
419	 41.80	0	414191..414922	+	243	182683389	fabG	SPCG_0419	-	3-ketoacyl-(acyl-carrier-protein) reductase
420	 42.41	0	414935..416179	+	414	182683390	fabF	SPCG_0420	-	3-oxoacyl-(acyl carrier protein) synthase
421	 43.21	0	416182..416667	+	161	182683391	accB	SPCG_0421	-	acetyl-CoA carboxylase
422	 43.74	0	416664..417086	+	140	182683392	fabZ	SPCG_0422	-	(3R)-hydroxymyristoyl ACP dehydratase
423	 43.06	0	417098..418465	+	455	182683393	accC	SPCG_0423	-	acetyl-CoA carboxylase
424	 44.06	0	418502..419368	+	288	182683394	accD	SPCG_0424	-	acetyl-CoA carboxylase beta subunit
425	 44.92	+1	419365..420132	+	255	182683395	accA	SPCG_0425	-	acetyl-CoA carboxylase alpha subunit
426	 37.30	0	420329..420580	+	83	182683396	-	SPCG_0426	-	hypothetical protein
427	 43.08	0	421370..421810	-	146	182683397	nusB	SPCG_0427	-	transcription antitermination protein NusB
428	 42.31	0	421785..422174	-	129	182683398	-	SPCG_0428	-	hypothetical protein
429	 41.71	0	422196..422756	-	186	182683399	efp	SPCG_0429	-	elongation factor P
430	 46.02	+1	422885..424327	-	480	182683400	gatB	SPCG_0430	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
431	 45.19	+1	424327..425793	-	488	182683401	gatA	SPCG_0431	-	glutamyl-tRNA amidotransferase subunit A
432	 42.98	0	425793..426155	-	120	182683402	gatC	SPCG_0432	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
433	 45.76	+1	426308..427852	+	514	182683403	prfC	SPCG_0433	-	peptide chain release factor 3
434	 31.31	-1	428107..428304	+	65	182683404	-	SPCG_0434	-	hypothetical protein
435	 37.29	0	428415..428591	+	58	182683405	-	SPCG_0435	-	hypothetical protein
436	 39.15	0	428707..428895	+	62	182683406	rpmB	SPCG_0436	-	50S ribosomal protein L28
437	 38.80	0	429052..429417	+	121	182683407	asp23	SPCG_0437	-	hypothetical protein
438	 43.53	0	429420..431087	+	555	182683408	-	SPCG_0438	-	hypothetical protein
439	 44.33	+1	431288..432988	+	566	182683409	ilvB	SPCG_0439	-	acetolactate synthase large subunit
440	 44.51	+1	432957..433457	+	166	182683410	ilvN	SPCG_0440	-	acetolactate synthase small subunit
441	 40.08	0	433523..434545	+	340	182683411	ilvC	SPCG_0441	-	ketol-acid reductoisomerase
442	 33.33	-1	434622..434888	+	88	182683412	-	SPCG_0442	-	hypothetical protein
443	 30.81	-1	435126..435482	+	118	182683413	-	SPCG_0443	-	hypothetical protein
444	 41.09	0	435532..436782	+	416	182683414	ilvA	SPCG_0444	-	threonine dehydratase
445	 37.57	0	436924..437112	+	62	182683415	-	SPCG_0445	-	hypothetical protein
446	 36.11	0	437666..437881	+	71	182683416	-	SPCG_0446	-	hypothetical protein
447	 43.59	0	437990..438730	-	246	182683417	glnQ	SPCG_0447	-	amino acid ABC transporter, ATP-binding protein
448	 43.10	0	438730..440295	-	521	182683418	glnH	SPCG_0448	-	amino acid ABC transporter, amino acid-binding protein/permease protein
449	 41.52	0	440430..442322	+	630	182683419	-	SPCG_0449	-	hypothetical protein
450	 27.49	-2	442319..442489	-	56	182683420	-	SPCG_0450	-	hypothetical protein
451	 42.46	0	442701..443171	-	156	182683421	-	SPCG_0451	-	degenerate transposase
452	 39.95	0	443747..444592	+	281	182683422	-	SPCG_0452	-	bacitracin resistance protein/undecaprenol kinase, putative
453	 35.81	0	444631..445275	-	214	182683423	-	SPCG_0453	-	degenerate transposase
454	 37.63	0	445272..445922	-	216	182683424	-	SPCG_0454	-	degenerate transposase
455	 40.87	0	446159..447286	-	375	182683425	dinP	SPCG_0455	-	DNA polymerase IV
456	 41.94	0	447568..449892	+	774	182683426	pfl	SPCG_0456	-	formate acetyltransferase
457	 31.32	-1	450260..450607	-	115	182683427	-	SPCG_0457	-	hypothetical protein
458	 32.28	-1	450805..451089	-	94	182683428	-	SPCG_0458	-	hypothetical protein
459	 36.89	0	452664..452888	+	74	182683429	-	SPCG_0459	-	PTS system, lactose-specific IIBC components, truncated
460	 43.47	0	453013..454452	-	479	182683430	trkH	SPCG_0460	-	Trk family potassium uptake protein
461	 42.59	0	454456..455805	-	449	182683431	trkA	SPCG_0461	-	Trk family potassium uptake protein
462	 42.92	0	455966..456841	+	291	182683432	-	SPCG_0462	-	hypothetical protein
463	 42.44	0	456856..457404	+	182	182683433	-	SPCG_0463	-	hypothetical protein
464	 41.09	0	457411..457668	+	85	182683434	-	SPCG_0464	-	hypothetical protein
465	 41.77	0	457770..459452	+	560	182683435	-	SPCG_0465	-	ABC transporter, ATP-binding protein
466	 41.40	0	459437..460267	+	276	182683436	-	SPCG_0466	-	hypothetical protein
467	 42.17	0	460421..460963	+	180	182683437	cspR	SPCG_0467	-	RNA methyltransferase
468	 40.59	0	461401..461979	+	192	182683438	-	SPCG_0468	-	hypothetical protein
469	 41.78	0	461969..462619	+	216	182683439	-	SPCG_0469	-	PAP2 family protein
470	 39.74	0	462647..463036	+	129	182683440	-	SPCG_0470	-	hypothetical protein
471	 40.22	0	463041..463490	+	149	182683441	-	SPCG_0471	-	hypothetical protein
472	 42.29	0	463603..464205	+	200	182683442	rpoE	SPCG_0472	-	DNA-directed RNA polymerase subunit delta
473	 44.15	0	464595..466202	+	535	182683443	pyrG	SPCG_0473	-	CTP synthetase
474	 42.16	0	466761..468392	-	543	182683444	-	SPCG_0474	-	Na/Pi cotransporter II-related protein
475	 28.83	-2	468594..468704	+	36	182683445	-	SPCG_0475	-	hypothetical protein
476	 41.41	0	468685..473664	+	1659	182683446	-	SPCG_0476	-	endo-beta-N-acetylglucosaminidase, putative
477	 43.53	0	473754..474950	+	398	182683447	pgk	SPCG_0477	-	phosphoglycerate kinase
478	 35.98	0	475086..475613	+	175	182683448	-	SPCG_0478	-	hypothetical protein
479	 42.02	0	475690..476046	+	118	182683449	glnR	SPCG_0479	-	MerR family transcriptional regulator
480	 42.32	0	476083..477429	+	448	182683450	glnA	SPCG_0480	-	glutamine synthetase, type I
481	 36.96	0	477902..478039	+	45	182683451	-	SPCG_0481	-	hypothetical protein
482	 30.55	-1	478210..479502	+	430	182683452	hsdS	SPCG_0482	-	type I restriction-modification system, S subunit
483	 31.21	-1	479450..481000	-	516	182683453	hsdS	SPCG_0483	-	type I restriction-modification system, S subunit
484	 34.63	-1	481000..482463	-	487	182683454	hsdM	SPCG_0484	-	type I restriction-modification system, M subunit
485	 36.93	0	482476..484809	-	777	182683455	hsdR	SPCG_0485	-	type I restriction-modification system, R subunit
486	 35.66	0	485159..485287	-	42	182683456	-	SPCG_0486	-	hypothetical protein
487	 34.70	-1	485488..485925	+	145	182683457	-	SPCG_0487	-	hypothetical protein
488	 43.82	0	486056..487123	+	355	182683458	hrcA	SPCG_0488	-	heat-inducible transcription repressor
489	 43.53	0	487126..487674	+	182	182683459	grpE	SPCG_0489	-	heat shock protein GrpE
490	 43.37	0	488154..489977	+	607	182683460	dnaK	SPCG_0490	-	molecular chaperone DnaK
491	 46.70	+1	491122..492258	+	378	182683461	-	SPCG_0491	-	dnaJ protein
492	 39.24	0	492948..493235	-	95	182683462	-	SPCG_0492	-	hypothetical protein
493	 42.82	0	493245..493655	-	136	182683463	-	SPCG_0493	-	HIT family protein
494	 44.54	+1	493723..494454	+	243	182683464	-	SPCG_0494	-	ABC transporter, ATP-binding protein
495	 43.05	0	494451..495500	+	349	182683465	-	SPCG_0495	-	ABC transporter, permease protein, putative
496	 44.24	0	495668..495997	-	109	182683466	blpT	SPCG_0496	-	blpT protein, fusion
497	 34.22	-1	496274..496612	+	112	182683467	blpS	SPCG_0497	-	blpS protein
498	 43.77	0	496617..497354	+	245	182683468	-	SPCG_0498	-	response regulator BlpR
499	 38.03	0	497368..498708	+	446	182683469	-	SPCG_0499	-	sensor histidine kinase BlpH, putative
500	 36.56	0	498965..500326	-	453	182683470	-	SPCG_0500	-	blpC ABC transporter
501	 37.50	0	500337..502496	-	719	182683471	-	SPCG_0501	-	competence factor transporting ATP-binding/permease protein ComA
502	 45.89	+1	502771..503001	+	76	182683472	blpU	SPCG_0502	-	bacteriocin BlpU
503	 34.57	-1	503581..503985	+	134	182683473	blpL	SPCG_0503	-	immunity protein BlpL
504	 37.04	0	504183..504371	+	62	182683474	-	SPCG_0504	-	IS1381 transposase protein A, truncation
505	 38.72	0	504599..504988	+	129	182683475	-	SPCG_0505	-	IS1381 transposase protein B
506	 42.75	0	505190..505444	+	84	182683476	blpM	SPCG_0506	-	bacteriocin BlpM
507	 44.12	0	505460..505663	+	67	182683477	blpN	SPCG_0507	-	blpN protein
508	 38.89	0	505895..506056	+	53	182683478	blpO	SPCG_0508	-	bacteriocin BlpO
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.