IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
254	 33.60	-1	237601..237969	-	122	182683224	-	SPCG_0254	-	hypothetical protein
255	 36.53	0	238114..238707	-	197	182683225	-	SPCG_0255	-	hypothetical protein
256	 30.76	-1	239211..239987	-	258	182683226	pflE	SPCG_0256	-	pyruvate formate-lyase-activating enzyme, putative
257	 31.45	-1	240061..240855	+	264	182683227	deoR	SPCG_0257	-	DeoR family transcriptional regulator
258	 30.28	-1	240868..241848	+	326	182683228	-	SPCG_0258	-	transcriptional regulator
259	 32.40	-1	242043..242363	+	106	182683229	-	SPCG_0259	-	PTS system, IIA component
260	 36.89	0	242409..242717	+	102	182683230	-	SPCG_0260	-	PTS system, IIB component
261	 36.13	0	242710..244032	+	440	182683231	-	SPCG_0261	-	PTS system, IIC component
262	 36.36	0	244174..246621	+	815	182683232	pflF	SPCG_0262	-	formate acetyltransferase, putative
263	 36.47	0	246640..247308	+	222	182683233	talC	SPCG_0263	-	fructose-6-phosphate aldolase
264	 36.64	0	247326..248414	+	362	182683234	gldA	SPCG_0264	-	glycerol dehydrogenase
265	 44.76	+1	248869..251370	+	833	182683235	leuS	SPCG_0265	-	leucyl-tRNA synthetase
266	 44.83	+1	251565..252260	+	231	182683236	-	SPCG_0266	-	acetyltransferase
267	 39.57	0	252272..252688	+	138	182683237	-	SPCG_0267	-	acetyltransferase
268	 38.71	0	253503..253595	-	30	182683238	-	SPCG_0268	-	hypothetical protein
269	 45.95	+1	253729..254727	+	332	182683239	ruvB	SPCG_0269	-	holliday junction DNA helicase RuvB
270	 38.10	0	254693..255280	+	195	182683240	-	SPCG_0270	-	hypothetical protein
271	 43.63	0	255493..256269	+	258	182683241	uppS	SPCG_0271	-	undecaprenyl diphosphate synthase
272	 41.54	0	256278..257081	+	267	182683242	cdsA	SPCG_0272	-	phosphatidate cytidylyltransferase
273	 42.54	0	257103..258362	+	419	182683243	eep	SPCG_0273	-	eep protein
274	 43.10	0	258375..260228	+	617	182683244	proS	SPCG_0274	-	prolyl-tRNA synthetase
275	 43.26	0	260327..261706	+	459	182683245	-	SPCG_0275	-	glycosy hydrolase family protein
276	 44.94	+1	261899..263707	+	602	182683246	glmS	SPCG_0276	-	D-fructose-6-phosphate amidotransferase
277	 46.10	+1	263826..264875	+	349	182683247	-	SPCG_0277	-	oxidoreductase, putative
278	 43.10	0	264975..268772	-	1265	182683248	-	SPCG_0278	-	alkaline amylopullulanase, putative
279	 40.33	0	268849..270405	+	518	182683249	-	SPCG_0279	-	IS1380-Spn1 transposase
280	 27.08	-2	270667..270762	+	31	182683250	-	SPCG_0280	-	hypothetical protein
281	 33.33	-1	270818..270910	+	30	182683251	-	SPCG_0281	-	hypothetical protein
282	 43.00	0	270897..271310	+	137	182683252	rpsL	SPCG_0282	-	30S ribosomal protein S12
283	 44.59	+1	271330..271800	+	156	182683253	rpsG	SPCG_0283	-	30S ribosomal protein S7
284	 43.28	0	272225..274306	+	693	182683254	fusA	SPCG_0284	-	elongation factor EF-2
285	 44.58	+1	274410..278801	+	1463	182683255	polC	SPCG_0285	-	DNA polymerase III subunit alpha
286	 39.77	0	278903..279166	+	87	182683256	-	SPCG_0286	-	hypothetical protein
287	 35.84	0	279159..279437	+	92	182683257	-	SPCG_0287	-	hypothetical protein
288	 35.95	0	279458..279610	+	50	182683258	-	SPCG_0288	-	hypothetical protein
289	 46.14	+1	279632..280873	+	413	182683259	pepS	SPCG_0289	-	aminopeptidase PepS
290	 43.29	0	280883..281113	+	76	182683260	-	SPCG_0290	-	hypothetical protein
291	 44.67	+1	281369..282091	+	240	182683261	rsuA	SPCG_0291	-	ribosomal small subunit pseudouridine synthase A
292	 43.37	0	282308..283642	+	444	182683262	pepC	SPCG_0292	-	aminopeptidase C
293	 41.12	0	283698..284609	-	303	182683263	manN	SPCG_0293	-	PTS system, mannose-specific IID component
294	 47.64	+1	284633..285436	-	267	182683264	manM	SPCG_0294	-	PTS system, mannose-specific IIC component
295	 42.34	0	285464..286462	-	332	182683265	manL	SPCG_0295	-	PTS system, mannose-specific IIAB components
296	 40.73	0	286862..288469	-	535	182683266	-	SPCG_0296	-	IS1380-Spn1 transposase
297	 45.88	+1	288396..289415	-	339	182683267	adhP	SPCG_0297	-	alcohol dehydrogenase
298	 40.14	0	289524..289670	-	48	182683268	-	SPCG_0298	-	hypothetical protein
299	 40.96	0	289754..290566	-	270	182683269	-	SPCG_0299	-	Cof family protein
300	 40.87	0	290702..292174	+	490	182683270	-	SPCG_0300	-	xanthine/uracil permease family protein
301	 37.41	0	292224..292934	+	236	182683271	-	SPCG_0301	-	hypothetical protein
302	 45.16	+1	293028..294008	+	326	182683272	sulA	SPCG_0302	-	dihydropteroate synthase
303	 45.96	+1	294010..295332	+	440	182683273	sulB	SPCG_0303	-	dihydrofolate synthetase
304	 43.24	0	295313..295867	+	184	182683274	folE	SPCG_0304	-	GTP cyclohydrolase I
305	 44.90	+1	295910..296722	+	270	182683275	sulD	SPCG_0305	-	bifunctional folate synthesis protein
306	 38.17	0	296767..297138	-	123	182683276	-	SPCG_0306	-	hypothetical protein
307	 27.62	-2	297128..297232	-	34	182683277	-	SPCG_0307	-	hypothetical protein
308	 39.82	0	297441..297887	+	148	182683278	rplM	SPCG_0308	-	50S ribosomal protein L13
309	 45.04	+1	297907..298299	+	130	182683279	rpsI	SPCG_0309	-	30S ribosomal protein S9
310	 31.58	-1	298767..298937	+	56	182683280	-	SPCG_0310	-	hypothetical protein
311	 32.45	-1	299013..299351	+	112	182683281	-	SPCG_0311	-	hypothetical protein
312	 35.77	0	299499..300977	+	492	182683282	bglA	SPCG_0312	-	6-phospho-beta-glucosidase
313	 31.25	-1	301029..301268	+	79	182683283	-	SPCG_0313	-	hypothetical protein
314	 35.09	0	301371..301712	+	113	182683284	-	SPCG_0314	-	PTS system, IIB component
315	 31.57	-1	301830..303809	+	659	182683285	-	SPCG_0315	-	PTS system, IIB component
316	 33.65	-1	303819..304133	+	104	182683286	-	SPCG_0316	-	PTS system, IIA component
317	 29.19	-2	304164..304670	+	168	182683287	-	SPCG_0317	-	hypothetical protein
318	 37.94	0	304750..306096	+	448	182683288	-	SPCG_0318	-	PTS system, IIC component
319	 35.59	0	306477..306653	+	58	182683289	-	SPCG_0319	-	hypothetical protein
320	 35.82	0	307055..309268	+	737	182683290	-	SPCG_0320	-	glycosy hydrolase family protein
321	 43.40	0	309490..309966	-	158	182683291	basA	SPCG_0321	-	glutathione peroxidase
322	 39.94	0	310156..313392	+	1078	182683292	-	SPCG_0322	-	hyaluronidase
323	 44.76	+1	314536..315165	-	209	182683293	kdgA	SPCG_0323	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
324	 43.01	0	315175..316176	-	333	182683294	-	SPCG_0324	-	carbohydrate kinase
325	 41.28	0	316207..316848	-	213	182683295	-	SPCG_0325	-	hypothetical protein
326	 44.12	0	316867..317682	-	271	182683296	gno	SPCG_0326	-	gluconate 5-dehydrogenase
327	 39.31	0	317954..318388	+	144	182683297	-	SPCG_0327	-	PTS system, IIA component
328	 40.89	0	318400..319590	+	396	182683298	-	SPCG_0328	-	glucuronyl hydrolase
329	 40.85	0	319601..320092	+	163	182683299	-	SPCG_0329	-	PTS system, IIB component
330	 41.67	0	320107..320886	+	259	182683300	-	SPCG_0330	-	PTS system, IIC component
331	 39.44	0	320873..321691	+	272	182683301	-	SPCG_0331	-	PTS system, IID component
332	 37.41	0	321691..321984	+	97	182683302	-	SPCG_0332	-	preprotein translocase, YajC subunit
333	 40.33	0	322006..323907	+	633	182683303	-	SPCG_0333	-	hypothetical protein
334	 38.95	0	323901..324968	+	355	182683304	regR	SPCG_0334	-	sugar binding transcriptional regulator RegR
335	 32.10	-1	325424..325666	-	80	182683305	-	SPCG_0335	-	hypothetical protein
336	 45.13	+1	325682..325876	-	64	182683306	yorfE	SPCG_0336	-	transcriptional regulator, putative
337	 44.06	0	326042..326992	+	316	182683307	mraW	SPCG_0337	-	S-adenosyl-methyltransferase MraW
338	 36.16	0	327004..327321	+	105	182683308	ftsL	SPCG_0338	-	cell division protein FtsL
339	 40.26	0	327325..329577	+	750	182683309	pbp2X	SPCG_0339	-	penicillin-binding protein 2X
340	 41.90	0	329579..330559	+	326	182683310	mraY	SPCG_0340	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
341	 33.86	-1	330699..330887	+	62	182683311	-	SPCG_0341	-	hypothetical protein
342	 43.07	0	331168..333273	+	701	182683312	clpL	SPCG_0342	-	ATP-dependent Clp protease, ATP-binding subunit, putative
343	 45.55	+1	334126..334608	-	160	182683313	luxS	SPCG_0343	-	S-ribosylhomocysteinase
344	 43.77	0	334703..336187	-	494	182683314	-	SPCG_0344	-	hypothetical protein
345	 42.35	0	336340..337947	+	535	182683315	dexB	SPCG_0345	-	glucan 1,6-alpha-glucosidase
346	 38.08	0	339007..340461	+	484	182683316	wzg	SPCG_0346	-	capsular polysaccharide biosynthesis protein Cps14A
347	 37.43	0	340463..341194	+	243	182683317	wzh	SPCG_0347	-	capsular polysaccharide biosynthesis protein Cps14B
348	 38.24	0	341203..341895	+	230	182683318	wzd	SPCG_0348	-	capsular polysaccharide biosynthesis protein Cps14C
349	 34.65	-1	341905..342588	+	227	182683319	wze	SPCG_0349	-	capsular polysaccharide biosynthesis protein Cps14D
350	 32.68	-1	342604..343971	+	455	182683320	wchA	SPCG_0350	-	glucosyl-1-phosphate transferase
351	 32.22	-1	343975..344424	+	149	182683321	wchJ	SPCG_0351	-	putative glycosyltransferase activity enhancer
352	 27.98	-2	344424..344927	+	167	182683322	wchK	SPCG_0352	-	ss-1,4-galactosyltransferase
353	 27.37	-2	344917..346089	+	390	182683323	wzy	SPCG_0353	-	putative polysaccharide polymerase
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.