IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.55   STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.49	0	197..1558	+	453	182682971	dnaA	SPCG_0001	-	chromosomal replication initiation protein
2	 34.30	-1	1717..2853	+	378	182682972	dnaN	SPCG_0002	-	DNA polymerase III subunit beta
3	 35.74	0	2864..3112	+	82	182682973	-	SPCG_0003	-	hypothetical protein
4	 39.91	0	3187..4311	+	374	182682974	-	SPCG_0004	-	GTP-binding protein
5	 33.51	-1	4382..4951	+	189	182682975	pth	SPCG_0005	-	peptidyl-tRNA hydrolase
6	 35.16	0	4952..8461	+	1169	182682976	mfd	SPCG_0006	-	transcription-repair coupling factor
7	 35.21	0	8519..8785	+	88	182682977	-	SPCG_0007	-	S4 domain-containing protein
8	 34.69	-1	8778..9146	+	122	182682978	-	SPCG_0008	-	hypothetical protein
9	 32.66	-1	9197..10534	+	445	182682979	-	SPCG_0009	-	hypothetical protein
10	 33.96	-1	10531..11808	+	425	182682980	-	SPCG_0010	-	mesJ/ycf62 family protein
11	 33.33	-1	11812..12354	+	180	182682981	hgt	SPCG_0011	-	hypoxanthine-guanine phosphoribosyltransferase
12	 39.05	0	12370..14328	+	652	182682982	ftsH	SPCG_0012	-	cell division protein FtsH
13	 37.29	0	14450..14929	+	159	182682983	comX1	SPCG_0013	-	transcriptional regulator ComX1
14	 35.92	0	20396..20743	+	115	182682984	-	SPCG_0014	-	IS630-Spn1, transposase Orf1
15	 35.51	0	21451..21588	+	45	182682985	-	SPCG_0015	-	hypothetical protein
16	 34.29	-1	21494..21598	-	34	182682986	-	SPCG_0016	-	hypothetical protein
17	 36.23	0	21822..22028	-	68	182682987	-	SPCG_0017	-	hypothetical protein
18	 29.22	-2	22338..22580	+	80	182682988	-	SPCG_0018	-	hypothetical protein
19	 40.63	0	22769..24097	+	442	182682989	purA	SPCG_0019	-	adenylosuccinate synthetase
20	 43.80	0	24298..24765	+	155	182682990	-	SPCG_0020	-	cytidine/deoxycytidylate deaminase family protein
21	 44.37	+1	24951..25394	+	147	182682991	dut	SPCG_0021	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
22	 41.94	0	25354..25911	+	185	182682992	-	SPCG_0022	-	hypothetical protein
23	 47.59	+1	26024..27286	+	420	182682993	radA	SPCG_0023	-	DNA repair: sensitivity to gamma and UV radiation
24	 41.45	0	27290..27856	+	188	182682994	-	SPCG_0024	-	hypothetical protein
25	 35.65	0	27877..28221	+	114	182682995	-	SPCG_0025	-	hypothetical protein
26	 39.13	0	28203..28754	+	183	182682996	-	SPCG_0026	-	hypothetical protein
27	 38.57	0	28730..29569	+	279	182682997	-	SPCG_0027	-	IS3-Spn1, transposase
28	 38.86	0	29575..30135	+	186	182682998	-	SPCG_0028	-	repair protein
29	 41.37	0	30229..31248	+	339	182682999	prsA	SPCG_0029	-	ribose-phosphate pyrophosphokinase
30	 40.40	0	31366..31719	+	117	182683000	-	SPCG_0030	-	hypothetical protein
31	 46.45	+1	31938..32120	+	60	182683001	-	SPCG_0031	-	competence-induced protein Ccs16
32	 43.52	0	32865..35534	+	889	182683002	polA	SPCG_0032	-	DNA polymerase I
33	 44.52	+1	35619..36056	+	145	182683003	-	SPCG_0033	-	hypothetical protein
34	 43.23	0	35958..36563	-	201	182683004	-	SPCG_0034	-	hypothetical protein
35	 46.63	+1	36511..37533	-	340	182683005	-	SPCG_0035	-	membrane protein
36	 46.07	+1	37670..38839	+	389	182683006	-	SPCG_0036	-	hypothetical protein
37	 42.96	0	38770..39486	-	238	182683008	-	SPCG_0037	-	hypothetical protein
38	 41.50	0	38836..39606	+	256	182683007	recO	SPCG_0038	-	DNA repair protein RecO
39	 47.73	+1	39603..40595	+	330	182683009	plsX	SPCG_0039	-	fatty acid/phospholipid synthesis protein
40	 39.32	0	40601..40834	+	77	182683010	acpP	SPCG_0040	-	acyl carrier protein, putative
41	 40.86	0	40877..40969	+	30	182683011	-	SPCG_0041	-	degenerate transposase
42	 34.41	-1	41079..41171	+	30	182683012	-	SPCG_0042	-	degenerate transposase
43	 46.75	+1	41373..41603	+	76	182683013	-	SPCG_0043	-	bacteriocin BlpU
44	 44.52	+1	42291..44471	+	726	182683014	comA	SPCG_0044	-	competence factor transporting ATP-binding/permease protein ComA
45	 44.52	+1	44484..45833	+	449	182683015	comB	SPCG_0045	-	competence factor transport protein ComB
46	 39.87	0	45961..46710	+	249	182683016	purC	SPCG_0046	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
47	 45.59	+1	46909..50637	+	1242	182683017	purL	SPCG_0047	-	phosphoribosylformylglycinamidine synthase, putative
48	 46.99	+1	50730..52172	+	480	182683018	purF	SPCG_0048	-	amidophosphoribosyltransferase
49	 47.12	+1	52209..53231	+	340	182683019	purM	SPCG_0049	-	phosphoribosylaminoimidazole synthetase
50	 46.89	+1	53228..53773	+	181	182683020	purN	SPCG_0050	-	phosphoribosylglycinamide formyltransferase
51	 29.41	-2	53857..54366	+	169	182683021	vanZ	SPCG_0051	-	vanZ protein, putative
52	 46.59	+1	54370..55938	+	522	182683022	purH	SPCG_0052	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
53	 47.90	+1	56060..57322	+	420	182683023	purD	SPCG_0053	-	phosphoribosylamine--glycine ligase
54	 47.01	+1	57579..57695	+	38	182683024	-	SPCG_0054	-	hypothetical protein
55	 48.85	+1	57692..58213	+	173	182683025	purE	SPCG_0055	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
56	 47.39	+1	58161..59291	+	376	182683026	purK	SPCG_0056	-	phosphoribosylaminoimidazole carboxylase
57	 36.40	0	59301..59528	+	75	182683027	-	SPCG_0057	-	hypothetical protein
58	 46.42	+1	59591..60889	+	432	182683028	purB	SPCG_0058	-	adenylosuccinate lyase
59	 42.03	0	60944..64969	-	1341	182683029	strH	SPCG_0059	-	beta-N-acetylhexosaminidase
60	 37.29	0	65196..65954	-	252	182683030	-	SPCG_0060	-	GntR family transcriptional regulator
61	 41.89	0	66260..68047	+	595	182683031	bgaC	SPCG_0061	-	beta-galactosidase
62	 41.30	0	68044..68520	+	158	182683032	-	SPCG_0062	-	PTS system, IIB component
63	 44.37	+1	68548..69453	+	301	182683033	-	SPCG_0063	-	PTS system, IIC component
64	 40.55	0	69425..70255	+	276	182683034	-	SPCG_0064	-	PTS system, IID component
65	 43.70	0	70262..70666	+	134	182683035	-	SPCG_0065	-	PTS system, IIA component
66	 42.29	0	70964..72124	+	386	182683036	agaS	SPCG_0066	-	sugar isomerase domain-containing protein
67	 45.38	+1	72246..73283	+	345	182683037	galM	SPCG_0067	-	aldose 1-epimerase
68	 44.44	+1	73490..74344	+	284	182683038	-	SPCG_0068	-	hypothetical protein
69	 38.37	0	74494..74751	+	85	182683039	-	SPCG_0069	-	hypothetical protein
70	 43.43	0	75209..75505	-	98	182683040	-	SPCG_0070	-	rhodanese-like domain-containing protein
71	 45.00	+1	75495..75614	-	39	182683041	-	SPCG_0071	-	hypothetical protein
72	 48.24	+1	75726..76490	+	254	182683042	-	SPCG_0072	-	phosphorylase Pnp/Udp family protein
73	 37.59	0	76746..76886	+	46	182683043	-	SPCG_0073	-	hypothetical protein
74	 41.38	0	77055..78434	+	459	182683044	trkH	SPCG_0074	-	Trk family potassium uptake protein
75	 43.52	0	78427..79113	+	228	182683045	trkA	SPCG_0075	-	Trk family potassium uptake protein
76	 42.16	0	79248..79451	+	67	182683046	-	SPCG_0076	-	hypothetical protein
77	 44.63	+1	79513..80052	+	179	182683047	-	SPCG_0077	-	hypothetical protein
78	 44.56	+1	79930..80499	-	189	182683049	-	SPCG_0079	-	hypothetical protein
79	 42.09	0	80119..80529	+	136	182683048	-	SPCG_0078	-	hypothetical protein
80	 43.07	0	80721..84131	+	1136	182683050	-	SPCG_0080	-	cell wall surface anchor family protein
81	 41.92	0	84298..84996	+	232	182683051	-	SPCG_0081	-	DNA-binding response regulator
82	 43.87	0	84993..86045	+	350	182683052	-	SPCG_0082	-	sensor histidine kinase
83	 43.14	0	86240..86851	+	203	182683053	rpsD	SPCG_0083	-	30S ribosomal protein S4
84	 30.21	-1	87072..87167	-	31	182683054	-	SPCG_0084	-	hypothetical protein
85	 42.59	0	87238..87507	+	89	182683055	-	SPCG_0085	-	hypothetical protein
86	 38.54	0	87587..87682	+	31	182683056	-	SPCG_0086	-	hypothetical protein
87	 40.83	0	87971..88930	+	319	182683057	-	SPCG_0087	-	ABC transporter, permease protein
88	 41.74	0	88893..89867	+	324	182683058	-	SPCG_0088	-	ABC transporter, permease protein
89	 37.62	0	89908..91446	+	512	182683059	-	SPCG_0089	-	ABC transporter, substrate-binding protein
90	 44.28	+1	91718..92704	+	328	182683060	-	SPCG_0090	-	hypothetical protein
91	 40.04	0	92886..93839	+	317	182683061	-	SPCG_0091	-	hypothetical protein
92	 40.00	0	93911..94975	-	354	182683062	-	SPCG_0092	-	hypothetical protein
93	 40.71	0	95038..96000	-	320	182683063	-	SPCG_0093	-	hypothetical protein
94	 43.77	0	95942..96535	-	197	182683064	-	SPCG_0094	-	hypothetical protein
95	 42.51	0	96522..96848	-	108	182683065	-	SPCG_0095	-	hypothetical protein
96	 45.07	+1	96987..98153	-	388	182683066	-	SPCG_0096	-	transporter, putative
97	 33.16	-1	98211..99368	+	385	182683067	-	SPCG_0097	-	glycosyl transferase
98	 42.14	0	99410..101260	+	616	182683068	-	SPCG_0098	-	capsular polysaccharide biosynthesis protein, putative
99	 43.41	0	101346..101603	-	85	182683069	-	SPCG_0099	-	hypothetical protein
100	 42.97	0	101653..102285	-	210	182683070	-	SPCG_0100	-	HAD superfamily hydrolase
39.55	MEAN

4.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.